University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Hindlimb left


Abbreviation
MuscHi
Color       
Superior regionsMuscle system

SynonymsAbbr.Language
HindlimbMuscHiEng
Hindlimb muscles Eng

SubregionsSide
Femoral musclesleft
Hind leg musclesleft
Tibial muscleleft
Tibialis anterior muscleleft
Short plantar muscleleft
Peroneus muscleleft
Posterior tibialis muscleleft
Flexor hallicus longusleft
Flexor digitorum longusleft
Hindlimb muscles vasculatureleft
Abductor digiti minimi muscleleft
Knee musclesleft
Inguinal musclesleft
Hindleg musclesleft
Gluteus maximus muscleleft
Gracilis muscle of hindlimbleft
Vastus lateralis muscle of the hindlimbleft
Vastus medialis of the hindlimbleft
Gastrocnemius soleus muscleleft
Extensor digitorum longus muscle hindlimbleft
Peroneus longus muscleleft
Extensor hallucis longus muscleleft
Gluteus medius muscleleft

Output to

NameSideAbbr.WeightDetails
Brachium pontis stem of middle cerebellar peduncleipsibp-2
Lateral ponsipsiLaP3
Pons medial partipsiPme3
Pons ventral partipsiPve3
Reticulotegmental nucleus of the ponsipsiRtTg2
Dorsal column nucleiipsiDCN-0.5
Medial lemniscusipsiml-2
Dorsal peduncular cortexipsiDP2
Secondary visual cortex lateral area infragranular layersipsiV2LigL1
Spinal cord lamina 1 lumbar level 4 medial portionipsiMESL1L4mp-0.5
PonscontraP-0.5

Input from

NameSideAbbr.WeightDetails
Lateral periaqueductal gray caudalipsiLPAGC-10
Ventral periaqueductal gray caudal levelipsiVPAGc-10
A5 noradrenaline cellsipsiA5-10
A7 noradrenaline cellsipsiA7-10
Locus coeruleusipsiLC-10
Subcoerulear areaipsiSCoe-10
Gigantocellular reticular nucleusipsiGi-10
C1 adrenaline cells rostral partipsiC1ro-10
Raphe magnus nucleusipsiRMg-10
Rostral ventrolateral medullaipsiRVLM-10
Paragigantocellular reticular nucleusipsiPGi-10
Rostral part of the ventromedial medulla oblongataipsiRMeObvm-10
Lateral hypothalamic areaipsiLH-10
Arcuate nucleusipsiArc-10
Paraventricular hypothalamic nucleusipsiPa-10
Lateral funiculusipsilf-10
Bed nucleus of the stria terminalisipsiBST-10
Frontal cortex area 1 caudal partipsiFr1c3
Hindleg region of the frontal cortexipsiFrHL3
Trunk region of the lateral agranular frontal cortexipsiAGlt3
Intermediolateral cell columnipsiIML-10
Intermediomedial cell columnipsiIMM-10
Intermediolateral cell column T10ipsiIMLT10-10
Intermediolateral cell column T11ipsiIMLT11-10
Intermediolateral cell column T12ipsiIMLT12-10
Intermediolateral cell column T13ipsiIMLT13-10
Intermediolateral cell column L1ipsiIMLL1-10
A5 noradrenaline cellscontraA5-10
Locus coeruleuscontraLC-10
Subcoerulear areacontraSCoe-10
Rostral ventrolateral medullacontraRVLM-10
Lateral hypothalamic areacontraLH-10
Arcuate nucleuscontraArc-10
Paraventricular hypothalamic nucleuscontraPa-10
Frontal cortex area 1 caudal partcontraFr1c1
Hindleg region of the frontal cortexcontraFrHL1
Trunk region of the lateral agranular frontal cortexcontraAGlt1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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