University of Rostock

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Rat connectome



Granule cell layer of the dentate gyrus left


Abbreviation
DGgL
Color       
Superior regionsDentate gyrus principal layers

SynonymsAbbr.Language
Stratum granulosum layer 2  
Granule cell layer of the dentate gyrusGCEng
Granule cell layer of the dentate gyrusDGgLEng
Stratum granulosum Lat
Granule cell layer of the fascia dentata Eng
Dentate gyrus granule cells Eng

SubregionsSide
Bascet cells of the granule cell layer of the dentate gyrusleft
Upper portion of the granule cell layer of the dentate gyrusleft
Granule cells of the granule cell layer of the dentate gyrusleft
Granule cell layer of the dentate gyrus infrapyramidal bladeleft
Granule cell layer of the dentate gyrus suprapyramidal bladeleft
Crest of the granule cell layer of the dentate gyrusleft
Granule cell layer of the top of the dentate gyrusleft
Bottom of the granule cell layer of the dentate gyrusleft
Border of the granule cell layer of the dentate gyrusleft
Internal wing of granule cellsleft
Interneurons of the granule cell layer of the dentate gyrusleft

Output to

NameSideAbbr.WeightDetails
RetinaipsiRET3
Anterior hippocampal formationipsiAHCf-0.5
Dorsal hippocampusipsiHIPPd-0.5
Hippocampal inferior regionipsiHIPPiR-0.5
Dentate gyrus rostral partipsiDGr-0.5
Outer molecular layer of the dentate gyrusipsiOML1
Hilus of the dentate gyrusipsiHil-0.5
Field CA3 of hippocampusipsiCA3-0.5
Distal field CA3 of hippocampusipsiDCA31
Field CA3 of hippocampus layer stratum lucidumipsiCA3sl3
Distal half of the mossy fiber layeripsiCA3L4sldh-0.5
Extraventricular part of the mossy fiber layeripsiCA3L4slev-0.5
Ventral part of the mossy fiber layeripsiCA3L4slVe-0.5
Ventricular part of the mossy fiber layeripsiCA3L4slV-0.5
Field CA3 of hippocampus layer stratum pyramidaleipsiCA3pyr-0.5
Field CA3b of hippocampus stratum lucidumipsiCA3bsLu-0.5
Field CA3c of hippocampus infrapyramidal layeripsiCA3cipy-0.5
Field CA3c of hippocampus pyramidal layeripsiCA3cpy-0.5
Field CA3c of hippocampus stratum lucidumipsiCA3csL2
Ventral part of the regio inferior of the Ammon's hornipsiAmHvri4
Ammon horn opposite the fimbriaipsiAmHof-0.5
Ventrolateral hippocampusipsiVlHIPP-0.5
Entorhinal cortexipsiEnt0
Mossy fibersipsimossyF-0.5
Mossy fiber pathwayipsimfp-2
RetinacontraRET4
Dorsal hippocampuscontraHIPPd-0.5
Ventricular part of the mossy fiber layercontraCA3L4slV0
Extraventricular part of the mossy fiber layercontraCA3L4slev0

Input from

NameSideAbbr.WeightDetails
Dorsal raphe nucleusipsiDR-0.5
Dorsal raphe nucleus interfascicular partipsiDRI3
Median raphe nucleusipsiMnR3
Medial septum dorsal band complex type 1 axon cellsipsiMSDBt1ac-0.5
Dorsomedial hypothalamic areaipsiDMHyA-0.5
Supramammillar nucleusipsiSuM-0.5
Dorsal hippocampusipsiHIPPd-0.5
Dentate gyrusipsiDG-0.5
Bascet cells of the granule cell layer of the dentate gyrusipsiGCbac-0.5
Granule cell layer of the dentate gyrus infrapyramidal bladeipsiGCipy-0.5
Hilus of the dentate gyrusipsiHil-0.5
Hilar mossy cellsipsiHilmc-0.5
Mossy cells in Amarals zone 4ipsiHilagrMc-0.5
HIPP cells of the hilus of the dentate gyrusipsiHilhipp-2
HICAP cell of the hilus of the dentate gyrusipsiHilhicap-2
Dentate chandelier cells of the hilusipsiHilcha-0.5
Dentate basket cellsipsiHilB3
Dentate gyrus mossy cellsipsiDGPomo-0.5
Field CA1 of hippocampus layer stratum radiatumipsiCA1rad-0.5
Field CA1 of hippocampus layer stratum pyramidaleipsiCA1pyr-0.5
Field CA2 of hippocampusipsiCA20
Field CA3 of hippocampusipsiCA32
Field CA3 of hippocampus layer stratum pyramidale pyramidal neuronsipsiCA3L3spy1
Proximal field CA3 of hippocampusipsiPCA30
Entorhinal cortexipsiEnt0.5
Entorhinal cortex layer 3 stellate cellsipsiEntL3SC-0.5
Entorhinal cortex layer 3 pyramidal cellsipsiEntL3py-0.5
Entorhinal cortex layer 2ipsiEntL2-0.5
Entorhinal cortex layer 2 stellate cellsipsiEntL2SC-0.5
Entorhinal cortex layer 2 pyramidal cellsipsiEntL2py-0.5
Lateral entorhinal cortexipsiLEnt0.5
Medial entorhinal cortexipsiMEnt0.5
Medial entorhinal cortex layer 2ipsiMEntLyL2-0.5
Medial entorhinal cortex layer 4ipsiMEntLyL4-0.5
Medial entorhinal cortex deep layersipsiMEntDLy-0.5
Medial entorhinal cortex layer 5ipsiMEntLyL5-0.5
Medial entorhinal cortex layer 6ipsiMEntLyL6-0.5
Interpeduncular nucleus rostral subnucleus midrostrocaudal partipsiIPRmrc-0.5
Septal regionipsiSER-0.5
Anterior one-third hippocampal formationcontraAHCfot1
Dentate gyruscontraDG0
Dentate gyrus rostral partcontraDGr-0.5
Granule cell layer of the suprapyramidal limbcontraDGsupy-0.5
Granule cell layer of the dentate gyrus infrapyramidal bladecontraGCipy1
Hilus of the dentate gyruscontraHil1
Deep hilar regioncontraHild-0.5
Polymorph layer of the hilus of the dentate gyruscontraHilpL-0.5
Field CA1a of hippocampuscontraCA1a0
Field CA1b of hippocampuscontraCA1b0
Field CA1c of hippocampuscontraCA1-c0
Field CA3c of hippocampuscontraCA3c-1
Field CA3a of hippocampuscontraCA3a0
Field CA3b of hippocampuscontraCA3b0
SubiculumcontraS0
Entorhinal cortexcontraEnt-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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