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Rat connectome



Hilus of the dentate gyrus left


Abbreviation
Hil
Color       
Superior regionsPolymorph layer of the dentate gyrus

SynonymsAbbr.Language
Polymorphic layer of dentate gyrus  
Dentate gyrus polymorphic layer  
Hilus of dentate gyrus  
Dentate gyrus hilus  
Hilus gyri dentatiHDG 
Region CA4  
Field CA4 of hippocampal formation  
Hilus of the fascia dentata Eng
Hilus fasciae dentatae Eng
Hilar zone of area dentata Eng
Hilus of the dentate gyrusHilEng
Hilus  
Hilar region of the fascia dentata Eng

SubregionsSide
Deep hilar regionleft
Hilar mossy cellsleft
Hilus of the dentate gyrus granule cell layerleft
Hilus of the dentate gyrus NPY neuron populationleft
Hilus of the dentate gyrus subgranular layerleft
Stratum oriens of the hilusleft
Stratum radiatum of the hilusleft
Hilus of the dentate gyrus at temporal levelsleft
Hilus of the dentate gyrus non-pyramidal cellsleft
Adjacent to granule cell layer of the hilus of the dentate gyrusleft
HIPP cells of the hilus of the dentate gyrusleft
Polymorph layer of the hilus of the dentate gyrusleft
Dentate chandelier cells of the hilusleft
Dentate basket cellsleft
Hilus of the dentate gyrus fusiform cellsleft
Hilar border of the dentate gyrusleft
Hilar ectopic granule cellsleft
Hilus of the dentate gyrus central partleft
Hilar interneuronsleft
Hilar cellsleft
Hilus of the dentate gyrus multipolar cellsleft
Middle hilus of the dentate gyrusleft
Dentate gyrus hilar cellleft
Suprapyramidal blade of the hilusleft
Hilus of the dentate gyrus nonprincipal neuronsleft
Hilus of the dentate gyrus pyramidal cellsleft
Hilus of the dentate gyrus spiny multipolar cellsleft
Hilus of the dentate gyrus small stellate cellsleft
Hilus of the dentate gyrus medium sized stellate cellsleft
Dorsal hilus of the dentate gyrusleft
Ventral hilus of the dentate gyrusleft

Output to

NameSideAbbr.WeightDetails
Diagonal band of BrocaipsiDBB1
Medial septal nucleusipsiMS2
Anterodorsal thalamic nucleusipsiAD0
Anteromedial thalamic nucleusipsiAM0
Anteroventral thalamic nucleusipsiAV0
Paratenial thalamic nucleusipsiPT0
Schaffer collateralsipsischaff-0.5
Dorsal hippocampusipsiHIPPd2
Septal part of the inferior hippocampusipsiHIPPiRs-0.5
Dentate gyrus rostral partipsiDGr-0.5
Rostral dentate gyrus medial part molecular layeripsiDGrMmo-0.5
Dorsal hippocampus dentate gyrusipsiDDG-0.5
Dentate gyrus layersipsiDGL3
Inner molecular layer of the dentate gyrusipsiIMLDG3
Inner molecular layer just above the granule cell layer of the dentate gyrusipsiIMLjagDG3
Outer molecular layer of the dentate gyrusipsiOML1
Granule cell layer of the dentate gyrusipsiDGgL-0.5
Polymorph layer of the dentate gyrusipsiDGpo-0.5
Hilus of the dentate gyrusipsiHil1
Hilar mossy cellsipsiHilmc-0.5
Mossy cells in Amarals zone 4ipsiHilagrMc-0.5
HIPP cells of the hilus of the dentate gyrusipsiHilhipp-0.5
Dentate gyrus suprapyramidal bladeipsiDGLspy2
Dentate gyrus infrapyramidal bladeipsiDGLipy2
Dentate gyrus axo-axonic cellsipsiDGPoAA-0.5
Inner third of the fascia dentataipsiiTFD3
Field CA1 of hippocampusipsiCA1-2
Field CA1 of hippocampus layer stratum radiatumipsiCA1rad-0.5
Field CA1 of hippocampus layer superficial half of the stratum radiatumipsiCA1L5srsh-0.5
Field CA1 of hippocampus layer stratum oriensipsiCA1or0.5
Field CA1 of hippocampus axo-axonic cellsipsiCA1AA-0.5
Field CA1 of hippocampus septal partipsiCA1sep-0.5
Field CA2 of hippocampusipsiCA2-2
Field CA3 of hippocampusipsiCA3-0.5
Field CA3 of hippocampus axo-axonic cellsipsiCA3PoAA-0.5
Field CA3 of hippocampus layer stratum radiatum adjacent to the extraventricular part of the mossy fiber layeripsiCA3RadaeV-0.5
Field CA3 of hippocampus layer stratum lucidumipsiCA3sl-0.5
Extraventricular part of the mossy fiber layeripsiCA3L4slev-0.5
Ventricular part of the mossy fiber layeripsiCA3L4slV-0.5
Field CA3 of hippocampus layer stratum pyramidaleipsiCA3pyr-0.5
Field CA3 of hippocampus layer stratum pyramidale adjacent to the extraventricular part of the mossy fiber layeripsiCA3L3speV-0.5
Field CA3 of hippocampus layer stratum pyramidale pyramidal cells near the stratum lucidumipsiCA3L3spPCL0
Field CA3 of hippocampus layer stratum oriens adjacent to the extraventricular part of the mossy fiber layeripsiCA3L2soeV-0.5
Field CA3 of hippocampus granule cellsipsiCA3Lgc-2
Field CA3c of hippocampus infrapyramidal layeripsiCA3cipy-0.5
Field CA3c of hippocampus pyramidal cellsipsiCA3cPC0.5
Field CA3c of hippocampus pyramidal layeripsiCA3cpy-0.5
Field CA4 of hippocampusipsiCA4-2
Subiculum dorsal partipsiSd1
Ventral hippocampusipsiHIPPv1
Granular layer of the dentate gyrusipsiGrDG1
Molecular layer of the dentate gyrusipsiMol-0.5
Alveus of the hippocampusipsialv-2
Fornixipsif-2
Descending column of the fornixipsidcf1
Posterior-basal portion of the fornixipsipbf-2
Fimbriaipsifimb-2
Dorsal retrosplenial cortex caudal partipsiRSdc1
Mossy fiber bundle adjacent to the CA3 pyramidal layeripsimfpaCA3-0.5
Cingulate cortexipsiCg-0.5
Septal regionipsiSER2
Lateral septal nucleusipsiLS2
Lateral septal nucleus dorsal partipsiLSD0.5
Medial septal nucleuscontraMS-0.5
Caudate putamencontraCPu-0.5
HippocampuscontraHIPP3
Hippocampal fissurecontrahf-2
Hippocampal regionscontraHIPPR-0.5
Dorsal hippocampuscontraHIPPd1
Hippocampal inferior region stratum orienscontraHIPPiRor-0.5
Hippocampal formationcontraHIPPP-0.5
Dentate gyruscontraDG2
Dentate gyrus medial partcontraDGm-0.5
Dentate gyrus rostral partcontraDGr-0.5
Rostral dentate gyrus medial part molecular layercontraDGrMmo1
Dorsal hippocampus dentate gyruscontraDDG-0.5
Hilus of the dorsal hippocampus dentate gyruscontraHDDG-0.5
Inner molecular layer of the dentate gyruscontraIMLDG3
Outer molecular layer of the dentate gyruscontraOML1
Dentate gyrus molecular layercontraDGmL-0.5
Dentate gyrus molecular layer proximal one-thirdcontraDGmLpot3
Inner molecular layer of the dentate gyruscontraIMLDG2
Granule cell layer of the dentate gyruscontraDGgL1
Polymorph layer of the dentate gyruscontraDGpo-0.5
Hilus of the dentate gyruscontraHil3
Inner third of the fascia dentatacontraiTFD3
Field CA1 of hippocampuscontraCA13
Field CA1 of hippocampus stratum lacunosum-molecularecontraCA1LM3
Field CA1 of hippocampus layer stratum radiatum outer partcontraCA1L5sro3
Field CA1 of hippocampus septal partcontraCA1sep-0.5
Field CA2 of hippocampuscontraCA2-0.5
Field CA3 of hippocampuscontraCA31
Field CA3 of hippocampus dorsal partcontraCA3d-0.5
Field CA3 of hippocampus stratum lacunosum-molecularecontraCA3lm3
Field CA3 of hippocampus layer stratum radiatum adjacent to the extraventricular part of the mossy fiber layercontraCA3RadaeV0
Ventricular part of the mossy fiber layercontraCA3L4slV0
Extraventricular part of the mossy fiber layercontraCA3L4slev0
Field CA3 of hippocampus layer stratum pyramidale adjacent to the extraventricular part of the mossy fiber layercontraCA3L3speV0
Field CA3 of hippocampus layer stratum oriens adjacent to the extraventricular part of the mossy fiber layercontraCA3L2soeV0
Field CA3c of hippocampuscontraCA3c3
Molecular layer of the dentate gyruscontraMol-0.5
Posterior-basal portion of the fornixcontrapbf-2
Lateral septal nucleuscontraLS-0.5
Lateral septal nucleus dorsal partcontraLSD0.5

Input from

NameSideAbbr.WeightDetails
Ventral tegmental area A10ipsiVTA-0.5
Raphe nucleiipsiRAN3
Dorsal raphe nucleus interfascicular partipsiDRI-0.5
Median raphe nucleusipsiMnR3
Interfascicular area of the median raphe nucleusipsiMnRiF-0.5
Magnocellular basal forebrain neuronal complexipsiMBFNC-0.5
Medial septum dorsal band complexipsiMSDB3
Diagonal band of BrocaipsiDBB-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB-0.5
Nucleus of the horizontal limb of the diagonal band caudal partipsiHDBc1
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Nucleus of the vertical limb of the diagonal band caudal partipsiVDBc-1
Medial septal nucleusipsiMS3
Medial septal nucleus rostral part ventral portionipsiMSRVp-0.5
Intermediomedial part of the medial septal nucleusipsiMSinm-0.5
Medial septum dorsal band complex type 1 axon cellsipsiMSDBt1ac3
Substantia innominataipsiSI-0.5
Granular cells of the hippocampusipsiHIPgr3
Dorsal hippocampusipsiHIPPd-0.5
Dentate gyrusipsiDG1
Dentate gyrus molecular layeripsiDGmL1
Outer molecular layer of the dentate gyrusipsiOML-0.5
GABAergic neurons of the outer molecular layer of the dentate gyrusipsiOMLG0.5
Cajals displaced cellsipsiDGmLcajd-0.5
Granule cell layer of the dentate gyrusipsiDGgL-0.5
Granule cells of the granule cell layer of the dentate gyrusipsiGCgc-0.5
Polymorph layer of the dentate gyrusipsiDGpo-0.5
Hilus of the dentate gyrusipsiHil1
Hilar mossy cellsipsiHilmc3
Hilus of the dentate gyrus non-pyramidal cellsipsiHilnopy1
Mossy cells in Amarals zone 4ipsiHilagrMc-0.5
Dentate chandelier cells of the hilusipsiHilcha-0.5
Dentate basket cellsipsiHilB-0.5
Hilus of the dentate gyrus fusiform cellsipsiHilfus-0.5
Dentate gyrus granule cells in the suprapyramidal bladeipsiDGLgspy-0.5
Dentate gyrus mossy cellsipsiDGPomo-0.5
Field CA1 of hippocampusipsiCA10
Field CA1 of hippocampus layer stratum oriensipsiCA1or-0.5
Field CA2 of hippocampusipsiCA2-0.5
Field CA2 of hippocampus layer stratum radiatumipsiCA2rad-0.5
Field CA2 of hippocampus layer stratum pyramidaleipsiCA2pyr-0.5
Field CA2 of hippocampus layer stratum oriensipsiCA2or-0.5
Field CA3 of hippocampusipsiCA31
Field CA3 of hippocampus layer stratum lucidum spiny neuronsipsiCA3L4slsp0.5
Field CA3 of hippocampus layer stratum pyramidaleipsiCA3pyr1
Field CA3 of hippocampus layer stratum pyramidale pyramidal cells near the stratum lucidumipsiCA3L3spPCL-0.5
Field CA3 of hippocampus layer stratum pyramidale pyramidal neuronsipsiCA3L3spy4
Field CA3a of hippocampus layers stratum oriensipsiCA3aLso-0.5
Field CA3a of hippocampus layers stratum radiatumipsiCA3aLsa-0.5
Field CA3a of hippocampus pyramidal cell layeripsiCA3aLpy-0.5
Field CA3b of hippocampus stratum pyramidaleipsiCA3bpy-0.5
Proximal part of field CA3b of hippocampusipsiCA3bp-0.5
Field CA3c of hippocampusipsiCA3c-0.5
Field CA3c of hippocampus pyramidal cellsipsiCA3cPC3
Field CA3c of hippocampus stratum oriensipsiCA3cso-0.5
Field CA3c of hippocampus ventral partipsiCA3cV-0.5
Proximal field CA3 of hippocampusipsiPCA31
Field CA4 of hippocampusipsiCA4-0.5
PresubiculumipsiPrS1
ParasubiculumipsiPaS1
PostsubiculumipsiPost1
Entorhinal cortexipsiEnt0.5
Entorhinal cortex layer 3ipsiEntL3-0.5
Entorhinal cortex layer 2ipsiEntL2-0.5
Lateral entorhinal cortexipsiLEnt0.5
Medial entorhinal cortexipsiMEnt0.5
Medial entorhinal cortex layer 4ipsiMEntLyL4-0.5
Medial entorhinal cortex deep layersipsiMEntDLy-0.5
Medial entorhinal cortex layer 5ipsiMEntLyL5-0.5
Medial entorhinal cortex layer 6ipsiMEntLyL6-0.5
Dorsal corner of the apical interpeduncular nucleusipsiIPDA-0.5
Lateral corner of the apical interpeduncular nucleusipsiIPLA-0.5
Septal regionipsiSER3
Ventral tegmental area A10contraVTA-0.5
Nucleus of the horizontal limb of the diagonal band caudal partcontraHDBc1
Medial septal nucleuscontraMS1.5
Anterior one-third hippocampal formationcontraAHCfot1
Dentate gyruscontraDG2
Granule cell layer of the suprapyramidal limbcontraDGsupy-0.5
Granule cell layer of the dentate gyrus infrapyramidal bladecontraGCipy0.5
Hilus of the dentate gyruscontraHil3
Deep hilar regioncontraHild-0.5
Field CA1 of hippocampuscontraCA1-0.5
Field CA3 of hippocampuscontraCA33
Field CA3 of hippocampus layer stratum pyramidalecontraCA3pyr1
Field CA3 of hippocampus granule cellscontraCA3Lgc1
Field CA3c of hippocampuscontraCA3c1
Field CA4 of hippocampuscontraCA4-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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