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Rat connectome



Cerebellar lobule 1 left


Abbreviation
CERL1
Color       
Superior regionsAnterior lobe

SynonymsAbbr.Language
Cerebellar lobule 1CERL1Eng
Lobule 1 of Larsell  
Lingula of the cerebellar vermis Eng
Zünglein Ger
Lobule 1  
LingulaLING 
1st cerebellar lobule1CbEng
Lingula in the anterior lobe Eng

SubregionsSide
Cerebellar lobule 1 zonesleft
Cerebellar lobule 1 zebrin bandsleft
Cerebellar lobule 1 granule cellsleft
Cerebellar lobule 1 molecular layerleft

Output to

NameSideAbbr.WeightDetails
Caudal aspect of the interstitial cell groups of the X-zoneipsiCaiXZO-0.5
Rostral interstitial cell groups of the X-zoneipsiRiXZO-0.5
Anterior interposed nucleus medial partipsiAINM-0.5
Interposed cerebellar nucleus posterior part medial partipsiIntPM-0.5
Cerebellum parallel fibersipsicerepf-2
Cerebellum mossy fibersipsiceremossy-2
Parabrachial nucleusipsiPB0
Dorsal part of the middle one third of the parabrachial nucleusipsiPBDmiotD3
Vestibular nucleiipsiVnc-0.5
Lateral vestibular nucleusipsiLVe-0.5
Climbing fibersipsicLf-2
Masseteric nerveipsimass0.5

Input from

NameSideAbbr.WeightDetails
Oculomotor nucleusipsi3-0.5
Edinger Westphal nucleusipsiEW1
Lateral cerebellar nucleus intermediate levelipsiCERLim0
Medial cerebellar nucleus rostromedial partipsiMedrm2
Medial cerebellar nucleus ventral partipsiMedV3
Pontine nucleiipsiPn0
Parabrachial nucleusipsiPB-0.5
Lateral parabrachial nucleus lateral partipsiLPBL-0.5
Parabrachial nucleus dorsal medial clusteripsiPBdmc-0.5
Parabrachial nucleus dorsal partipsiPBD-1
Parabrachial nucleus magnocellular partipsiPBmac-0.5
Lateral reticular nucleusipsiLRt-0.5
Dorsolateral part of the caudal part of the magnocellular lateral reticular nucleusipsiLRtMCCDL1
Dorsocaudal part of the lateral reticular nucleus magnocellular partipsiDCLRtMC-0.5
Abducens nucleusipsi6-0.5
Trigeminal systemipsi5S-0.5
Trochlear nucleusipsi4-0.5
Spinal vestibular nucleusipsiSpVe3
Vestibular nucleiipsiVnc1
Superior vestibular nucleusipsiSuVe3
Medial vestibular nucleusipsiMVe3
Medial vestibular nucleus magnocellular partipsiMVeMC3
Medial vestibular nucleus parvicellular partipsiMVePC4
Lateral vestibular nucleusipsiLVe3
Cuneate nucleusipsiCu0
Cuneate nucleus rostral partipsiCuRo-0.5
External cuneate nucleusipsiECu-0.5
Olivary nucleusipsiON3
Inferior oliveipsiIO-0.5
Inferior olive cap of Kooy of the medial nucleusipsiIOK0.5
Inferior olive dorsal nucleusipsiIOD1
Inferior olive dorsal nucleus caudal partipsiIODC-0.5
Inferior olive medial nucleus subnulceus A and BipsiIOMsAB-0.5
Inferior olive subnucleus A of medial nucleusipsiIOA3
Inferior olive subnucleus B of medial nucleusipsiIOB3
Inferior olive beta subnucleusipsiIOBe1
Inferior olive subnucleus C of medial nucleusipsiIOC1
Inferior olive ventrolateral protrusionipsiIOVL1
Inferior olive dorsomedial cell columnipsiIOdmc1
Dorsal spinocerebellar tractipsidsc-2
Ventral spinocerebellar tractipsivsc-2
Cervical segment 1ipsiCS13
Central cervical nucleus C1ipsiCeCvC1-0.5
Cervical segment 2ipsiCS23
Central cervical nucleus C2ipsiCeCvC2-0.5
Cervical segment 3ipsiCS33
Central cervical nucleus C3ipsiCeCvC3-0.5
Central cervical nucleus C4ipsiCeCvC4-0.5
Dorsal nucleus T1ipsiDNT13
Spinal cord layer 5 T1ipsiSCL5T13
Spinal cord layer 6 T1ipsiSCL6T13
Spinal cord layer 4 T1ipsiSCL4T13
Dorsal nucleus T2ipsiDNT23
Spinal cord layer 5 T2ipsiSCL5T23
Spinal cord layer 6 T2ipsiSCL6T23
Spinal cord layer 4 T2ipsiSCL4T23
Dorsal nucleus T3ipsiDNT33
Spinal cord layer 5 T3ipsiSCL5T33
Spinal cord layer 6 T3ipsiSCL6T33
Spinal cord layer 4 T3ipsiSCL4T33
Dorsal nucleus T4ipsiDNT43
Spinal cord layer 5 T4ipsiSCL5T43
Spinal cord layer 6 T4ipsiSCL6T43
Spinal cord layer 4 T4ipsiSCL4T43
Dorsal nucleus T5ipsiDNT53
Spinal cord layer 5 T5ipsiSCL5T53
Spinal cord layer 6 T5ipsiSCL6T53
Spinal cord layer 4 T5ipsiSCL4T53
Dorsal nucleus T6ipsiDNT63
Spinal cord layer 5 T6ipsiSCL5T63
Spinal cord layer 6 T6ipsiSCL6T63
Spinal cord layer 4 T6ipsiSCL4T63
Dorsal nucleus T7ipsiDNT73
Spinal cord layer 5 T7ipsiSCL5T73
Spinal cord layer 6 T7ipsiSCL6T73
Spinal cord layer 4 T7ipsiSCL4T73
Dorsal nucleus T8ipsiDNT83
Spinal cord layer 5 T8ipsiSCL5T83
Spinal cord layer 6 T8ipsiSCL6T83
Spinal cord layer 4 T8ipsiSCL4T83
Dorsal nucleus T9ipsiDNT93
Spinal cord layer 5 T9ipsiSCL5T93
Spinal cord layer 6 T9ipsiSCL6T93
Spinal cord layer 4 T9ipsiSCL4T93
Dorsal nucleus T10ipsiDNT103
Spinal cord layer 5 T10ipsiSCL5T103
Spinal cord layer 6 T10ipsiSCL6T103
Spinal cord layer 4 T10ipsiSCL4T103
Dorsal nucleus T11ipsiDNT113
Spinal cord layer 5 T11ipsiSCL5T113
Spinal cord layer 6 T11ipsiSCL6T113
Spinal cord layer 4 T11ipsiSCL4T113
Thoracal segment 12ipsiT12-0.5
Dorsal nucleus T12ipsiDNT123
Spinal cord layer 5 T12ipsiSCL5T123
Spinal cord layer 6 T12ipsiSCL6T123
Spinal cord layer 4 T12ipsiSCL4T123
Thoracal segment 13ipsiT133
Dorsal nucleus T13ipsiDNT133
Spinal cord layer 5 T13ipsiSCL5T133
Spinal cord layer 6 T13ipsiSCL6T133
Spinal cord layer 4 T13ipsiSCL4T133
Lumbar segment 1ipsiL11
Spinal cord layer 5 L1ipsiSCL5L13
Spinal cord layer 6 L1ipsiSCL6L13
Spinal cord layer 4 L1ipsiSCL4L13
Spinal cord layer 7 L1ipsiSCL7L12
Lumbar segment 2ipsiL22
Spinal cord layer 5 L2ipsiSCL5L23
Spinal cord layer 6 L2ipsiSCL6L23
Spinal cord layer 4 L2ipsiSCL4L23
Spinal cord layer 7 L2ipsiSCL7L22
Lumbar segment 3ipsiL32
Spinal cord layer 5 L3ipsiSCL5L33
Spinal cord layer 6 L3ipsiSCL6L33
Spinal cord layer 4 L3ipsiSCL4L33
Spinal cord layer 7 L3ipsiSCL7L32
Lumbar segment 4ipsiL40.5
Lumbar segment 5ipsiL53
Lumbar segment 6ipsiL6-0.5
Sacral segment 1ipsiSa1-0.5
Sacral segment 2ipsiSa2-0.5
Sacral segment 3ipsiSa3-0.5
Sacral segment 4ipsiSa4-0.5
Coccygeal segment 1ipsiCo1-0.5
Coccygeal segment 2ipsiCo2-0.5
Coccygeal segment 3ipsiCo3-0.5
Oculomotor nucleuscontra3-0.5
Medial cerebellar nucleus middle subdivisioncontraMMCM2
Lateral reticular nucleuscontraLRt-0.5
Abducens nucleuscontra6-0.5
Trochlear nucleuscontra4-0.5
Cuneate nucleuscontraCu-0.5
Cuneate nucleus rostral partcontraCuRo-0.5
External cuneate nucleuscontraECu-0.5
Inferior olive cap of Kooy of the medial nucleuscontraIOK3
Inferior olive caudal partcontraIOCa3
Inferior olive dorsal nucleuscontraIOD3
Inferior olive dorsal nucleus caudal partcontraIODC-0.5
Inferior olive medial nucleuscontraIOM3
Inferior olive medial nucleus caudal partcontraIOMc-0.5
Lateral part of the inferior olive medial nucleus caudal partcontraIOMcLa3
Inferior olive medial nucleus caudolateral partcontraIOMcL-0.5
Inferior olive beta subnucleuscontraIOBe3
Inferior olive posterior partcontraIOpo3
Inferior olive principal nucleuscontraIOPr3
Inferior olive dorsomedial cell columncontraIOdmc3
Central region of the caudal part of the medial olivecontraMONCC3
Lateral part of the rostral dorsal olivecontraONRDL-0.5
Central cervical nucleus C2contraCeCvC2-0.5
Central cervical nucleus C3contraCeCvC3-0.5
Dorsal nucleus T1contraDNT11
Spinal cord layer 5 T1contraSCL5T11
Spinal cord layer 6 T1contraSCL6T11
Spinal cord layer 4 T1contraSCL4T11
Dorsal nucleus T2contraDNT21
Spinal cord layer 5 T2contraSCL5T21
Spinal cord layer 6 T2contraSCL6T21
Spinal cord layer 4 T2contraSCL4T21
Dorsal nucleus T3contraDNT31
Spinal cord layer 5 T3contraSCL5T31
Spinal cord layer 6 T3contraSCL6T31
Spinal cord layer 4 T3contraSCL4T31
Dorsal nucleus T4contraDNT41
Spinal cord layer 5 T4contraSCL5T41
Spinal cord layer 6 T4contraSCL6T41
Spinal cord layer 4 T4contraSCL4T41
Dorsal nucleus T5contraDNT51
Spinal cord layer 5 T5contraSCL5T51
Spinal cord layer 6 T5contraSCL6T51
Spinal cord layer 4 T5contraSCL4T51
Dorsal nucleus T6contraDNT61
Spinal cord layer 5 T6contraSCL5T61
Spinal cord layer 6 T6contraSCL6T61
Spinal cord layer 4 T6contraSCL4T61
Dorsal nucleus T7contraDNT71
Spinal cord layer 5 T7contraSCL5T71
Spinal cord layer 6 T7contraSCL6T71
Spinal cord layer 4 T7contraSCL4T71
Dorsal nucleus T8contraDNT81
Spinal cord layer 5 T8contraSCL5T81
Spinal cord layer 6 T8contraSCL6T81
Spinal cord layer 4 T8contraSCL4T81
Dorsal nucleus T9contraDNT91
Spinal cord layer 5 T9contraSCL5T91
Spinal cord layer 6 T9contraSCL6T91
Spinal cord layer 4 T9contraSCL4T91
Dorsal nucleus T10contraDNT101
Spinal cord layer 5 T10contraSCL5T101
Spinal cord layer 6 T10contraSCL6T101
Spinal cord layer 4 T10contraSCL4T101
Dorsal nucleus T11contraDNT111
Spinal cord layer 5 T11contraSCL5T111
Spinal cord layer 6 T11contraSCL6T111
Spinal cord layer 4 T11contraSCL4T111
Dorsal nucleus T12contraDNT121
Spinal cord layer 5 T12contraSCL5T121
Spinal cord layer 6 T12contraSCL6T121
Spinal cord layer 4 T12contraSCL4T121
Dorsal nucleus T13contraDNT131
Spinal cord layer 5 T13contraSCL5T131
Spinal cord layer 6 T13contraSCL6T131
Spinal cord layer 4 T13contraSCL4T131
Spinal cord layer 5 L1contraSCL5L11
Spinal cord layer 6 L1contraSCL6L11
Spinal cord layer 4 L1contraSCL4L11
Spinal cord layer 7 L1contraSCL7L11
Spinal cord layer 5 L2contraSCL5L21
Spinal cord layer 6 L2contraSCL6L21
Spinal cord layer 4 L2contraSCL4L21
Spinal cord layer 7 L2contraSCL7L21
Spinal cord layer 5 L3contraSCL5L31
Spinal cord layer 6 L3contraSCL6L31
Spinal cord layer 4 L3contraSCL4L31
Spinal cord layer 7 L3contraSCL7L31
Lumbar segment 5contraL5-0.5
Lumbar segment 6contraL6-0.5
Sacral segment 1contraSa1-0.5
Sacral segment 2contraSa2-0.5
Sacral segment 3contraSa3-0.5
Sacral segment 4contraSa4-0.5
Coccygeal segment 1contraCo1-0.5
Coccygeal segment 2contraCo2-0.5
Coccygeal segment 3contraCo3-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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