University of Rostock

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Rat connectome



Spinal cord layer 9 T2 left


Abbreviation
SCL9T2
Color       
Superior regionsVentral horn T2

SynonymsAbbr.Language
Spinal cord layer 9 T2SCL9T2Eng

Output to

NameSideAbbr.WeightDetails
Lateral periaqueductal grayipsiLPAG1
Gigantocellular reticular nucleusipsiGi-0.5
Lateral reticular nucleusipsiLRt0
Raphe pallidus nucleusipsiRPa1
Vasodepressor part of caudal midline medulla oblongataipsiCMeObmVd1.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Lateral group of the dorsal thalamusipsiLAT0
Medial thalamic zoneipsiMTZ0
Lateral reticular nucleuscontraLRt0
Raphe pallidus nucleuscontraRPa1
Lateral group of the dorsal thalamuscontraLAT0
Medial thalamic zonecontraMTZ0
Ventromedial gray substance at the level of the lumbal segment 4contraL4vmg3
Median nerveipsimen-0.5
Ulnar nerveipsiuln-0.5
StomachipsiOrgsStomS-1
Femoral bone marrowipsiOrgSkFemM-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Tegmental areaipsiTGA2
A5 noradrenaline cellsipsiA52
A7 noradrenaline cellsipsiA72
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv2
Caudal part of ventral locus coeruleusipsiLCveca3
Medial reticular formationipsiRFm-0.5
Rostroventrolateral reticular nucleusipsiRVL2
Ventrolateral reticular formationipsiVLRF-0.5
Pontine reticular nucleusipsiPRN3
Dorsolateral pontine reticular formationipsiPRNDL1
Pontine reticular nucleus oral partipsiPnO2
Pontine reticular nucleus caudal partipsiPNC2
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus alpha partipsiGiA2
Gigantocellular reticular nucleus alpha part rostrocaudal partipsiGiArc2
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Gigantocellular reticular nucleus rostral partipsiGiRo-0.5
Lateral reticular nucleusipsiLRt2
Medial subnucleus reticularis ventralisipsiMSRV2
Subcoeruleus nucleusipsiSubC3
Facial nucleus rostral endipsi7ro2
Lateral vestibular nucleusipsiLVe1
Nucleus of the solitary tractipsiSol1
Nucleus of the solitary tract medial part caudal zoneipsiSolMc1
Raphe magnus nucleusipsiRMg2.5
Raphe magnus nucleus rostral partipsiRMgR3
Raphe obscurus nucleusipsiROb2
Raphe pallidus nucleusipsiRPa2
Lateral paragigantocellular nucleusipsiLPGi2
Rostral part of the ventromedial medulla oblongataipsiRMeObvm1
Lateral hypothalamic areaipsiLH1
Paraventricular hypothalamic nucleusipsiPa1
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS11
Secondary somatosensory cortexipsiS21
Area X T1ipsiSCL10T1-0.5
Spinal cord layer 5 T1ipsiSCL5T1-0.5
Spinal cord layer 6 T1ipsiSCL6T1-0.5
Spinal cord layer 3 T1ipsiSCL3T1-0.5
Spinal cord layer 4 T1ipsiSCL4T1-0.5
Spinal cord layer 1 T1ipsiSCL1T1-0.5
Spinal cord layer 2 T1ipsiSCL2T1-0.5
Spinal cord layer 7 T1ipsiSCL7T1-0.5
Spinal cord layer 8 T1ipsiSCL8T1-0.5
Area X T3ipsiSCL10T3-0.5
Spinal cord layer 5 T3ipsiSCL5T3-0.5
Spinal cord layer 6 T3ipsiSCL6T3-0.5
Spinal cord layer 3 T3ipsiSCL3T3-0.5
Spinal cord layer 4 T3ipsiSCL4T3-0.5
Spinal cord layer 1 T3ipsiSCL1T3-0.5
Spinal cord layer 2 T3ipsiSCL2T3-0.5
Spinal cord layer 7 T3ipsiSCL7T3-0.5
Spinal cord layer 8 T3ipsiSCL8T3-0.5
Area X T4ipsiSCL10T4-0.5
Spinal cord layer 5 T4ipsiSCL5T4-0.5
Spinal cord layer 6 T4ipsiSCL6T4-0.5
Spinal cord layer 3 T4ipsiSCL3T4-0.5
Spinal cord layer 4 T4ipsiSCL4T4-0.5
Spinal cord layer 1 T4ipsiSCL1T4-0.5
Spinal cord layer 2 T4ipsiSCL2T4-0.5
Spinal cord layer 7 T4ipsiSCL7T4-0.5
Spinal cord layer 8 T4ipsiSCL8T4-0.5
Area X T5ipsiSCL10T5-0.5
Spinal cord layer 5 T5ipsiSCL5T5-0.5
Spinal cord layer 6 T5ipsiSCL6T5-0.5
Spinal cord layer 3 T5ipsiSCL3T5-0.5
Spinal cord layer 4 T5ipsiSCL4T5-0.5
Spinal cord layer 1 T5ipsiSCL1T5-0.5
Spinal cord layer 2 T5ipsiSCL2T5-0.5
Spinal cord layer 7 T5ipsiSCL7T5-0.5
Spinal cord layer 8 T5ipsiSCL8T5-0.5
Area X T6ipsiSCL10T6-0.5
Spinal cord layer 5 T6ipsiSCL5T6-0.5
Spinal cord layer 6 T6ipsiSCL6T6-0.5
Spinal cord layer 3 T6ipsiSCL3T6-0.5
Spinal cord layer 4 T6ipsiSCL4T6-0.5
Spinal cord layer 1 T6ipsiSCL1T6-0.5
Spinal cord layer 2 T6ipsiSCL2T6-0.5
Spinal cord layer 7 T6ipsiSCL7T6-0.5
Spinal cord layer 8 T6ipsiSCL8T6-0.5
Area X T7ipsiSCL10T7-0.5
Spinal cord layer 5 T7ipsiSCL5T7-0.5
Spinal cord layer 6 T7ipsiSCL6T7-0.5
Spinal cord layer 3 T7ipsiSCL3T7-0.5
Spinal cord layer 4 T7ipsiSCL4T7-0.5
Spinal cord layer 1 T7ipsiSCL1T7-0.5
Spinal cord layer 2 T7ipsiSCL2T7-0.5
Spinal cord layer 7 T7ipsiSCL7T7-0.5
Spinal cord layer 8 T7ipsiSCL8T7-0.5
Tegmental areacontraTGA1
A5 noradrenaline cellscontraA51
A7 noradrenaline cellscontraA71
Locus coeruleuscontraLC1
Locus coeruleus ventral partcontraLCv1
Caudal part of ventral locus coeruleuscontraLCveca0.5
Medial reticular formationcontraRFm-0.5
Rostroventrolateral reticular nucleuscontraRVL1
Pontine reticular nucleus oral partcontraPnO0.5
Pontine reticular nucleus caudal partcontraPNC0.5
Koelliker Fuse nucleuscontraKF0.5
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus alpha partcontraGiA1
Gigantocellular reticular nucleus alpha part rostrocaudal partcontraGiArc1
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Medial subnucleus reticularis ventraliscontraMSRV1
Subcoeruleus nucleuscontraSubC1
Facial nucleus rostral endcontra7ro1
Lateral vestibular nucleuscontraLVe0.5
Nucleus of the solitary tractcontraSol0.5
Nucleus of the solitary tract medial part caudal zonecontraSolMc0.5
Raphe magnus nucleuscontraRMg1
Raphe magnus nucleus rostral partcontraRMgR1.5
Raphe obscurus nucleuscontraROb1
Raphe pallidus nucleuscontraRPa1
Lateral paragigantocellular nucleuscontraLPGi1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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