University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Cerebral cortex layer 1 right


Abbreviation
CCL1
Color       
Superior regionsSupragranular layers of the neocortex

SynonymsAbbr.Language
Cerebral cortex layer 1CCL1Eng

Output to

NameSideAbbr.WeightDetails
ThalamuscontraT1
Anterior group of the dorsal thalamusipsiATN0
Anterodorsal thalamic nucleusipsiAD0
Anteromedial thalamic nucleusipsiAM2
Anteroventral thalamic nucleusipsiAV0
Gelatinosus thalamic nucleusipsiG0
Posterior thalamic nuclear groupipsiPo2
Mediodorsal thalamic nucleusipsiMD0
Submedius thalamic nucleusipsiSub0
Reuniens thalamic nucleusipsiRe2
Ventrolateral thalamic nucleusipsiVL2
Ventral posterior thalamic complexipsiVPT0
Ventromedial thalamic nucleusipsiVM2
Intralaminar nuclei anterior partipsiILNA2
Lateral posterior thalamic nucleusipsiLP2
Laterodorsal thalamic nucleusipsiLD2
Cingulate cortex area 1ipsiCg11
Motoric regionsipsiM1
Primary visual cortexipsiV11
Dorsal geniculate nucleus lateral partipsiDLGl2
Dorsal geniculate nucleus lateral part ventromedial partipsiDLGlvm0
Medial geniculate nucleusipsiMG2
Medial geniculate nucleus ventral partipsiMGV0

Input from

NameSideAbbr.WeightDetails
Dorsal raphe nucleusipsiDR-0.5
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Posterior hypothalamic areaipsiPHA2
Anteromedial thalamic nucleusipsiAM1
Ventromedial thalamic nucleusipsiVM1
Lateral posterior thalamic nucleus mediorostral partipsiLPMR1
Primary somatosensory cortex forelimb regionipsiS1FL3
Dorsal geniculate nucleus lateral partipsiDLGl1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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