University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Eye left


Abbreviation
OrgEye
Color       
Superior regionsOrgans

SynonymsAbbr.Language
Intraocular  
Eyeball Eng
EyeOrgEyeEng

SubregionsSide
Anterior chamber of the eyeleft
Choroid plexus of the eyeleft
Ciliary bodyleft
Conjunctivaleft
Nicitating membraneleft
Posterior chamber of the eyeleft
Vitreous humor of eyeleft
Interior chamber of the eyeleft

Output to

NameSideAbbr.WeightDetails
Superior colliculusipsiSC-0.5
Trigeminal ganglionipsi5Gn-0.5
Olivary pretectal nucleusipsiOPT1.5
Suprachiasmatic nucleus dorsomedial partipsiSCnDM-0.5
Suprachiasmatic nucleus ventrolateral partipsiSCnVL-0.5
Nucleus of the optic tract lateral partipsiOTL1.5
Dorsal geniculate nucleusipsiDLG-0.5
Intergeniculate leafipsiIGL-0.5
Ventromedial part of the dorsal part of the lateral geniculate nucleusipsiLGDvm3
Ventral geniculate nucleusipsiVG-0.5
Olivary pretectal nucleuscontraOPT1
Dorsal part of the lateral geniculate complexcontraLGd3
Nucleus of the optic tract lateral partcontraOTL1.5
Ventral lateral geniculate nucleuscontraVLG-0.5

Input from

NameSideAbbr.WeightDetails
TectumipsiTEC-0.5
Brachium of the superior colliculusipsibsc4
Optic nerve layer of the superior colliculusipsiOp1
Stratum griseum superficialeipsiSCsgr1
Anteromedial tectumipsiTECam3
Lateral tectumipsiTECLa1
Posterior tectumipsiTECPo1
Optic terminal fieldsipsiOTF4
Edinger Westphal nucleusipsiEW3
Trigeminal ganglionipsi5Gn-0.5
Optic tractipsiopt2
Retinal ganglion cellsipsiRETg1
Thoracal segment 1ipsiT1-0.5
Thoracal segment 2ipsiT2-0.5
Thoracal segment 3ipsiT3-0.5
Superior colliculuscontraSC3
Optic nerve layer of the superior colliculuscontraOp3
Superior colliculus zonal layercontraSCzo3
Stratum griseum superficialecontraSCsgr3
Optic nervecontra2n-0.5
Optic tractcontraopt2
Medial pretectal nucleuscontraMPT3
RetinacontraRET-0.5
Retinal ganglion cellscontraRETg-0.5
Superior cervical ganglionipsiAutoSCeG1
Caudal part of the superior cervical ganglionipsiAutoSCeGC1
Middle part of the superior cervical ganglionipsiAutoSCeGMi1
Rostral half of the superior cervical ganglionipsiAutoRhSCeG2
Ciliary ganglionipsiAutoCiG-0.5
Pterygopalatine ganglionipsiAutoPpG3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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