University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Optic tract left


Abbreviation
opt
Color       
Superior regionsVisual system

SynonymsAbbr.Language
Optic tractoptEng

SubregionsSide
Optic tract dorsal partleft
Optic tract ventral partleft

Output to

NameSideAbbr.WeightDetails
Superior colliculusipsiSC-0.5
Supraoptic nucleus anterior divisionipsiSOA-2
Posterior lobe of pituitaryipsiPPit-0.5
Retinal ganglion cellsipsiRETg-2
Amygdaloid complexipsiAC-1
Central amygdaloid nucleusipsiCe-2
Dorsal geniculate nucleus lateral partipsiDLGl-2
Rostrolateral part of the dorsal geniculate nucleus lateral partipsiDLGlRL-0.5
Rostromedial dorsal geniculate nucleus lateral partipsiDLGlRM-0.5
Dorsal part of the caudal portion of the lateral geniculate nucleusipsiDLGc-0.5
Optic tractcontraopt-2
Retinal ganglion cellscontraRETg-2
EyeipsiOrgEye2
EyecontraOrgEye2

Input from

NameSideAbbr.WeightDetails
Oculomotor nucleusipsi3-2
Superior colliculus superficial layers commissural neuronsipsiSCscn-0.5
Medial preoptic areaipsiMPA-2
HypothalamusipsiHYPO0
Lateral hypothalamic areaipsiLH-2
Preoptic periventricular nucleusipsiPePO-2
Suprachiasmatic nucleusipsiSCh-2
Suprachiasmatic preoptic nucleusipsiPSCh-2
Supraoptic decussationipsisox-2
Subfornical organipsiSFO0
RetinaipsiRET2
Retina nasal partipsiRETna0.5
Temporal crescent of the retinaipsiRETtc2
Retinal ganglion cells of the temporal crescent of the retinaipsiRETgtc3
Retinal ganglion cellsipsiRETg3
Superior part of the retinaipsiRETS-0.5
Superior temporal quadrant of the retina type 1 ganglion cellsipsiRstqGC12
Superior temporal quadrant of the retina type 2 ganglion cellsipsiRstqGC22
Superior temporal quadrant of the retina type 3 ganglion cellsipsiRstqGC32
Retina upper central partipsiRETuc-0.5
Retina inferior partipsiRETi-0.5
Central amygdaloid nucleus lateral divisionipsiCeL-2
Central amygdaloid nucleus medial divisionipsiCeM-2
Caudate putamenipsiCPu0.5
Caudal striatumipsiCPuc1
Dorsal striatumipsiCPud3
Rostral striatumipsiCPur1
Ventral striatumipsiCPuv2
Middle-third of the caudate putamenipsiCPuMit2
Primary visual cortexipsiV1-2
Secondary visual cortex medial areaipsiV2M-2
Secondary visual cortex lateral areaipsiV2L-2
Lateral geniculate complexipsiLG-0.5
Intergeniculate leafipsiIGL-2
Accessory olfactory bulbipsiAOB-2
Lateral septal nucleus mediolateral partipsiLSML3
Parabigeminal nucleuscontraPBG-2
Superior colliculus intermediate layerscontraSCi-2
Superior colliculus deep layerscontraSCd-2
Suprachiasmatic nucleuscontraSCh-2
Supraoptic decussationcontrasox-2
Optic tractcontraopt-2
RetinacontraRET3
Temporal crescent of the retinacontraRETtc2
Retina upper temporal quadrantcontraRETutq2
Retinal ganglion cellscontraRETg3
Superior temporal quadrant of the retina type 1 ganglion cellscontraRstqGC12
Superior temporal quadrant of the retina type 2 ganglion cellscontraRstqGC22
Superior temporal quadrant of the retina type 3 ganglion cellscontraRstqGC32
Ventral lateral geniculate nucleuscontraVLG-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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