University of Rostock

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Rat connectome



Lateral part of the caudal perifornical area left


Abbreviation
PeFCL
Color       
Superior regionsPerifornical nucleus caudal part

SynonymsAbbr.Language
Lateral part of the caudal perifornical areaPeFCLEng

Output to

NameSideAbbr.WeightDetails
Medial longitudinal fasciculusipsimlf2
Nuclei of the lateral lemniscusipsiNLL0
Perilemniscal nucleus ventral partipsiPLZV0.5
Sagulum nucleusipsiSag0.5
Medial paralemniscal nucleusipsiMPL0.5
Interstitial nucleus of medial longitudinal fasciculusipsiIMLF0.5
Oculomotor nucleusipsi30
Dorsolateral periaqueductal grayipsiDLPAG0
Dorsomedial periaqueductal grayipsiDMPAG0.5
Lateral periaqueductal grayipsiLPAG3
Ventrolateral periaqueductal grayipsiVLPAG2
Tectospinal tractipsits0.5
Dorsal peduncular pontine nucleusipsiDPPn0
Subpeduncular tegmental nucleusipsiSPTg0.5
Laterodorsal tegmental nucleusipsiLDTg2
Ventral tegmental nucleusipsiVTg1
Dorsal tegmental nucleus central partipsiDTgC0
Dorsal tegmental nucleus pericentral partipsiDTgP0.5
Pedunculopontine tegmental nucleusipsiPPTg2
Edinger Westphal nucleusipsiEW1
PonsipsiP0.5
A5 noradrenaline cellsipsiA51
A7 noradrenaline cellsipsiA71
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC2
Parapyramidal nucleusipsiPPy0.5
Dorsomedial tegmental areaipsiDMTg1
Reticulotegmental nucleus of the ponsipsiRtTg1
Prepositus nucleusipsiPr0.5
Intermediate reticular nucleusipsiIRt1
Isthmic reticular formationipsiisRT1
Paramedian reticular nucleusipsiPMn0.5
Deep mesencephalic nucleusipsiDpMe0.5
Precuneiform areaipsiPCnFa1
Pontine reticular nucleus oral partipsiPnO2
Pontine reticular nucleus paramedian partipsiPRNpm0
Pontine reticular nucleus ventral partipsiPnV1
Pontine reticular nucleus caudal partipsiPNC2
Koelliker Fuse nucleusipsiKF1
Lateral parabrachial nucleusipsiLPB2
Parabrachial nucleus medialipsiPBnMe2
Gigantocellular reticular nucleusipsiGi1
Gigantocellular reticular nucleus alpha partipsiGiA1
Gigantocellular reticular nucleus ventral partipsiGiV1
Lateral reticular nucleusipsiLRt0.5
Medial subnucleus reticularis ventralisipsiMSRV0.5
Medullary reticular nucleus dorsal partipsiMdDd1
Parvicellular reticular nucleusipsiPCRt0
Parvicellular reticular nucleus alpha partipsiPCRtA0.5
Rhabdoid nucleusipsiRbd0.5
Sphenoid nucleusipsiSph0.5
Nucleus of the trapezoid bodyipsiTz0
Subcoeruleus nucleus alpha partipsiSubCA1
Subcoeruleus nucleus dorsal partipsiSubCD1
Subcoeruleus nucleus ventral partipsiSubCV1
Supragenual nucleusipsiSGe0
C1 adrenaline cellsipsiC11
C2 adrenaline cellsipsiC20.5
C3 adrenaline cellsipsiC30
Ambiguus nucleusipsiAmb0.5
Boetzinger complexipsiBo0.5
Abducens nucleusipsi60.5
Facial nucleusipsi70.5
Perifacial zoneipsiP71
Hypoglossal nucleusipsi12S0.5
Mesencephalic trigeminal tractipsime50
Supratrigeminal nucleusipsiSu51
Motor trigeminal nucleusipsiMo50.5
Spinal trigeminal nucleusipsiSp5nc0.5
Peritrigeminal zoneipsiP50.5
Trigeminal solitary transition zoneipsi5Sol0.5
Trigeminothalamic tractipsitth0.5
Paratrochlear nucleusipsiPa41
Trochlear nucleusipsi40.5
Medial vestibular nucleus magnocellular partipsiMVeMC0.5
Vestibulomesencephalic tractipsi8tv0.5
Vestibulospinal tractipsivesp0.5
Nucleus of the solitary tractipsiSol0.5
Parasolitary nucleusipsiPSol0.5
Solitary tractipsisol0.5
Dorsal motor nucleus of vagusipsi100.5
Dorsal raphe nucleusipsiDR2
Median raphe nucleusipsiMnR1
Pontine raphe nucleusipsiPnR1
Raphe magnus nucleusipsiRMg2
Raphe obscurus nucleusipsiROb1
Raphe pallidus nucleusipsiRPa2
Paramedial raphe nucleusipsiRApam1
A1 noradrenergic cells rostral partipsiA1R1
A2 noradrenergic cellsipsiA21
Epifascicular nucleusipsiEF0.5
Linear nucleus of the medullaipsiLi0.5
Nucleus of RolleripsiRo0
Inferior oliveipsiIO0.5
Juxtaolivary nucleusipsiJxO0.5
Caudal periolivary nucleusipsiCPO0
Lateral superior oliveipsiLSO0
Dorsal paragigantocellular nucleusipsiDPGi1
Lateral paragigantocellular nucleusipsiLPGi2
Lateral paragigantocellular nucleus alpha partipsiLPBGiA1
Lateral paragigantocellular nucleus external partipsiLPBGiE0.5
Pre Boetzinger complexipsiPrBo1
Retroambiguus nucleusipsiRAmb0.5
Rostral ventral respiratory groupipsiRVRG1
Inferior salivatory nucleusipsiIS0.5
Superior salivatory nucleusipsiSuS0.5
Nucleus X [Special group]ipsiNcX0
Superior cerebral peduncleipsisucp1
Medial lemniscusipsiml2
Ventral spinocerebellar tractipsivsc0
Field CA1 of hippocampus caudal partipsiCA1ca1
Central cervical nucleusipsiMESccn0.5
Pyramidal tractipsipy0.5
Rubrospinal tractipsirs0.5
Medial longitudinal fasciculuscontramlf-0.5
Nuclei of the lateral lemniscuscontraNLL0
Perilemniscal nucleus ventral partcontraPLZV-0.5
Sagulum nucleuscontraSag-0.5
Medial paralemniscal nucleuscontraMPL-0.5
Interstitial nucleus of medial longitudinal fasciculuscontraIMLF-0.5
Oculomotor nucleuscontra30
Dorsolateral periaqueductal graycontraDLPAG0
Dorsomedial periaqueductal graycontraDMPAG-0.5
Lateral periaqueductal graycontraLPAG-0.5
Ventrolateral periaqueductal graycontraVLPAG-0.5
Tectospinal tractcontrats-0.5
Dorsal peduncular pontine nucleuscontraDPPn0
Subpeduncular tegmental nucleuscontraSPTg-0.5
Laterodorsal tegmental nucleuscontraLDTg-0.5
Ventral tegmental nucleuscontraVTg-0.5
Dorsal tegmental nucleus central partcontraDTgC0
Dorsal tegmental nucleus pericentral partcontraDTgP-0.5
Pedunculopontine tegmental nucleuscontraPPTg-0.5
Edinger Westphal nucleuscontraEW-0.5
PonscontraP-0.5
A5 noradrenaline cellscontraA5-0.5
A7 noradrenaline cellscontraA7-0.5
Barringtons nucleuscontraBar-0.5
Locus coeruleuscontraLC-0.5
Parapyramidal nucleuscontraPPy-0.5
Dorsomedial tegmental areacontraDMTg-0.5
Reticulotegmental nucleus of the ponscontraRtTg-0.5
Prepositus nucleuscontraPr-0.5
Intermediate reticular nucleuscontraIRt-0.5
Isthmic reticular formationcontraisRT-0.5
Paramedian reticular nucleuscontraPMn-0.5
Deep mesencephalic nucleuscontraDpMe-0.5
Precuneiform areacontraPCnFa-0.5
Pontine reticular nucleus oral partcontraPnO-0.5
Pontine reticular nucleus paramedian partcontraPRNpm0
Pontine reticular nucleus ventral partcontraPnV-0.5
Pontine reticular nucleus caudal partcontraPNC-0.5
Koelliker Fuse nucleuscontraKF-0.5
Lateral parabrachial nucleuscontraLPB-0.5
Parabrachial nucleus medialcontraPBnMe-0.5
Gigantocellular reticular nucleuscontraGi-0.5
Gigantocellular reticular nucleus alpha partcontraGiA-0.5
Gigantocellular reticular nucleus ventral partcontraGiV-0.5
Lateral reticular nucleuscontraLRt-0.5
Medial subnucleus reticularis ventraliscontraMSRV-0.5
Medullary reticular nucleus dorsal partcontraMdDd-0.5
Parvicellular reticular nucleuscontraPCRt0
Parvicellular reticular nucleus alpha partcontraPCRtA-0.5
Rhabdoid nucleuscontraRbd-0.5
Sphenoid nucleuscontraSph-0.5
Nucleus of the trapezoid bodycontraTz0
Subcoeruleus nucleus alpha partcontraSubCA-0.5
Subcoeruleus nucleus dorsal partcontraSubCD-0.5
Subcoeruleus nucleus ventral partcontraSubCV-0.5
Supragenual nucleuscontraSGe0
C1 adrenaline cellscontraC1-0.5
C2 adrenaline cellscontraC2-0.5
C3 adrenaline cellscontraC30
Ambiguus nucleuscontraAmb-0.5
Boetzinger complexcontraBo-0.5
Abducens nucleuscontra6-0.5
Facial nucleuscontra7-0.5
Perifacial zonecontraP7-0.5
Hypoglossal nucleuscontra12S-0.5
Mesencephalic trigeminal tractcontrame50
Supratrigeminal nucleuscontraSu5-0.5
Motor trigeminal nucleuscontraMo5-0.5
Spinal trigeminal nucleuscontraSp5nc-0.5
Peritrigeminal zonecontraP5-0.5
Trigeminal solitary transition zonecontra5Sol-0.5
Trigeminothalamic tractcontratth-0.5
Paratrochlear nucleuscontraPa4-0.5
Trochlear nucleuscontra4-0.5
Medial vestibular nucleus magnocellular partcontraMVeMC-0.5
Vestibulomesencephalic tractcontra8tv-0.5
Vestibulospinal tractcontravesp-0.5
Nucleus of the solitary tractcontraSol-0.5
Parasolitary nucleuscontraPSol-0.5
Solitary tractcontrasol-0.5
Dorsal motor nucleus of vaguscontra10-0.5
Dorsal raphe nucleuscontraDR-0.5
Median raphe nucleuscontraMnR-0.5
Pontine raphe nucleuscontraPnR-0.5
Raphe magnus nucleuscontraRMg-0.5
Raphe obscurus nucleuscontraROb-0.5
Raphe pallidus nucleuscontraRPa-0.5
Paramedial raphe nucleuscontraRApam-0.5
A1 noradrenergic cells rostral partcontraA1R-0.5
A2 noradrenergic cellscontraA2-0.5
Epifascicular nucleuscontraEF-0.5
Linear nucleus of the medullacontraLi-0.5
Nucleus of RollercontraRo0
Inferior olivecontraIO-0.5
Juxtaolivary nucleuscontraJxO-0.5
Caudal periolivary nucleuscontraCPO0
Lateral superior olivecontraLSO0
Dorsal paragigantocellular nucleuscontraDPGi-0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Lateral paragigantocellular nucleus alpha partcontraLPBGiA-0.5
Lateral paragigantocellular nucleus external partcontraLPBGiE-0.5
Pre Boetzinger complexcontraPrBo-0.5
Retroambiguus nucleuscontraRAmb-0.5
Rostral ventral respiratory groupcontraRVRG-0.5
Inferior salivatory nucleuscontraIS-0.5
Superior salivatory nucleuscontraSuS-0.5
Nucleus X [Special group]contraNcX0
Superior cerebral pedunclecontrasucp-0.5
Medial lemniscuscontraml-0.5
Ventral spinocerebellar tractcontravsc0
Field CA1 of hippocampus caudal partcontraCA1ca-0.5
Central cervical nucleuscontraMESccn-0.5
Pyramidal tractcontrapy-0.5
Rubrospinal tractcontrars-0.5
Facial nerveipsi7fn0
Facial nervecontra7fn0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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