University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Substantia nigra compact part caudal tier left


Abbreviation
SNCC
Color       
Superior regionsSubstantia nigra compact part

SynonymsAbbr.Language
Substantia nigra compact part caudal tierSNCC 

SubregionsSide
Substantia nigra compact part caudal tier medial partleft

Output to

NameSideAbbr.WeightDetails
Substantia nigra compact partipsiSNC1
Ventral tegmental area A10ipsiVTA1
Caudate putamenipsiCPu2
Caudate putamen basolateral partipsiCPuBL1
Dorsal striatumipsiCPud2
Dorsally in the medial part of the dorsal striatumipsiCPudmd3
Dorsolateral striatumipsiCPudl2
Rostral striatumipsiCPur1.5
Rostrodorsal striatumipsiCPurd2
Caudate putamen rostrobasal partipsiCPurb1.5

Input from

NameSideAbbr.WeightDetails
Ventral tegmental area caudodorsomedial partipsiVTACDM1
Central amygdaloid nucleusipsiCe3
Globus pallidusipsiGP4
Accumbens nucleus coreipsiAcbC1
Accumbens nucleus shellipsiAcbSh1
Central accumbensipsiAcbCe1
Dorsal accumbensipsiAcbD2
Caudate putamenipsiCPu4
Caudomedial striatumipsiCPucm1
Dorsal striatumipsiCPud0
Rostromedial striatumipsiCPurm2
Subthalamic nucleusipsiSTh2.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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