University of Rostock

Department of Anatomy

Neuroscience Group

 Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Subthalamic nucleus left


Abbreviation
STh
Color       
Superior regionsBasal ganglia

SynonymsAbbr.Language
Nucleus subthalamicus Luys  
Corpus Luysi  
Corpus Luysii  
Nucleus subthalamicusSTNLat
Corpus subthalamicum  
Subthalamic nucleusSubTEng
Subthalamic nucleusSThEng
Subthalamic nucleus of Luys Eng
Subthalamic region Eng
Subthalamus  

SubregionsSide
Motor territory of the subthalamic nucleusleft
Parasubthalamic nucleusleft
Region between caudal subthalamic nucleus and rostral substantia nigraleft
Subthalamic nucleus anterior partleft
Subthalamic nucleus caudal partleft
Subthalamic nucleus caudomedial partleft
Subthalamic nucleus central partleft
Subthalamic nucleus dorsal partleft
Subthalamic nucleus dorsolateral partleft
Subthalamic nucleus dorsomedial partleft
Subthalamic nucleus lateral partleft
Subthalamic nucleus medial partleft
Subthalamic nucleus rostral partleft
Subthalamic nucleus rostrodorsal partleft
Subthalamic nucleus rostroventral partleft
Subthalamic nucleus ventral partleft
Subthalamic nucleus ventromedial partleft
Subthalamic nucleus neuronleft
Middle subthalamic nucleusleft
Subthalamic nucleus rostrolateral partleft
Subthalamic nucleus mid-rostrocaudalleft
Subthalamic nucleus mid-mediolateralleft
Subthalamic nucleus ellipsoidal neuronsleft

Output to

NameSideAbbr.WeightDetails
Nuclei of the lateral lemniscusipsiNLL0.5
Nucleus of DarkschewitschipsiDk0
Oculomotor nucleusipsi30
Ventrolateral periaqueductal grayipsiVLPAG0
Lateral pontine tegmentumipsiLPTG0
Red nucleusipsiR1
TectumipsiTEC0.5
Superior colliculusipsiSC1
Tegmental areaipsiTGA2
Central tegmental field dorsal partipsiTGACd0
Peduncularpontine nucleusipsiPPN-0.5
Peduncularpontine nucleus peribrachial regionipsiPPNpb1
Substantia nigra A9ipsiSN3
Substantia nigra caudal partipsiSNcp2
Substantia nigra compact partipsiSNC4
Substantia nigra compact part caudal tieripsiSNCC2.5
Substantia nigra lateral partipsiSNL3
Substantia nigra reticular partipsiSNR4
Substantia nigra reticular part caudal tieripsiSNRca2.5
Substantia nigra reticular part dorsal tieripsiSNRD4
Substantia nigra reticular part dorsoventral partipsiSNRdv0.5
Substantia nigra reticular part medial two-thirdsipsiSNRmtt-0.5
Substantia nigra reticular part medial one thirdipsiSNRmot4
Substantia nigra reticular part mediolateral partipsiSNRmL0.5
Substantia nigra reticular part rostrocaudal partipsiSNRrc3
Substantia nigra rostral partipsiSNrp-0.5
Substantia nigra ventral partipsiSNv2
Ventral tegmental area A10ipsiVTA1
Middle part of the retrorubral fieldipsiRRmi0
Lateral tegmental nucleusipsiLTN1
Laterodorsal tegmental nucleusipsiLDTg0
Ventral tegmental nucleusipsiVTg1
Dorsal tegmental nucleusipsiDTg0
Dorsal tegmental nucleus lateral partipsiDLTN0
Pedunculopontine tegmental nucleusipsiPPTg2
Pedunculopontine tegmental nucleus pars compactaipsiPPNC2
Edinger Westphal nucleusipsiEW2
Ansiform lobule crus 2a paramedian partipsiCrus2ap-10
Cerebellar lobule 7ipsiCERL7-10
Posterior lobe vermis lobule 7ipsiPLVERML7-10
Middle cerebellar peduncleipsimcp0
Superior cerebellar peduncleipsisucep-2
Locus coeruleusipsiLC2
Pontine nuclei caudal partipsiBPNc1
Reticular systemipsiRF0.5
Intermediate reticular nucleusipsiIRt1
Paramedian reticular nucleusipsiPMn1
Mesencephalic reticular formationipsiMRF3
Deep mesencephalic nucleusipsiDpMe0
Deep mesencephalic nucleus intermediateipsiDpMei0
Deep mesencephalic nucleus lateral partipsiDpMeL0
Deep mesencephalic nucleus medial partipsiDpMeM0
Pontine reticular nucleus oral partipsiPnO3
Pontine reticular nucleus caudal partipsiPNC2
Peribrachial regionipsiPBR2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe-0.5
Central part of the medial parabrachial nucleusipsiPBnCMe-0.5
Gigantocellular reticular nucleusipsiGi1
Motor trigeminal nucleusipsiMo51
Principal sensory trigeminal nucleusipsiPr51
Spinal trigeminal nucleusipsiSp5nc1
Dorsal raphe nucleusipsiDR1
Basal forebrainipsiBAF3
Endopiriform systemipsiEnN-0.5
Diagonal band of BrocaipsiDBB0
Nucleus of the horizontal limb of the diagonal bandipsiHDB0
Nucleus of the vertical limb of the diagonal bandipsiVDB0
Basal nucleus MeynertipsiB1.5
Substantia innominataipsiSI4
Substantia innominata dorsal partipsiSID4
Medial preoptic nucleusipsiMPO0
HypothalamusipsiHYPO0.5
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area medial to the plobus pallidusipsiLHmGP2
Lateral hypothalamic area posterior partipsiLHAp2
Lateral hypothalamic nucleusipsiLHN2
Lateral zone tuberal levelipsiLHt2
Anterior hypothalamic areaipsiAHA1
Anterior part of the anterior hypothalamic nucleusipsiAHna2
Posterior hypothalamic areaipsiPHA1
Ventromedial hypothalamic nucleusipsiVMH1
Mammillary bodyipsiCMAM1
A8 dopamine cells retrorubral group lateral partipsiRRFL3
A8 dopamine cells retrorubral group medial partipsiRRFm0
ThalamusipsiT0.5
Anterior group of the dorsal thalamusipsiATN-2
Parafascicular thalamic nucleusipsiPF1
Mediodorsal thalamic nucleus central partipsiMDC1
Mediodorsal thalamic nucleus lateral partipsiMDL-10
Reticular thalamic nucleusipsiRt1
Reticular thalamic nucleus caudal partipsiRtc2
Reticular thalamic nucleus rostral partipsiRtr-10
Reticular thalamic nucleus ventromedial partipsiRtvm3
Subparafascicular thalamic nucleus caudal partipsiSPFc1
Subparafascicular thalamic nucleus medial partipsiSPFme1
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Zona incertaipsiZI2
Lateral habenular nucleusipsiLHb1
Medial habenular nucleusipsiMHb1
Pretectal regionipsiPRT0.5
Internal capsuleipsiic-0.5
Cerebral peduncle basal partipsicp1
Corpus callosumipsicc-0.5
Forceps minor of the corpus callosumipsifmi-2
Genu of the corpus callosumipsigcc-0.5
Dorsal bank of rhinal fissureipsiDBrf-0.5
Amygdaloid complexipsiAC1
Anterior basolateral nucleusipsiBLA1
Dorsolateral part of the lateral nucleusipsiLaDL1
Bed nucleus of the stria terminalisipsiBST1
Central amygdaloid nucleusipsiCe2
Central amygdaloid nucleus dorsal partipsiCed0
Central amygdaloid nucleus lateral division capsular partipsiCeC1
Basal gangliaipsiBG2
Rostral part of claustrumipsiRCl0
Globus pallidusipsiGP4
Caudal globus pallidusipsiGPc2.5
Dorsal globus pallidusipsiDGP3
Lateral globus pallidusipsiLGP3
Medial globus pallidusipsiMGP3
Medial globus pallidus medial partipsiMGPm2.5
Caudal part of medial globus pallidus rostral partipsiMGPrc3
Peripallidal regionipsiPePa4
Subpallidal regionipsiSuPa0
Ventral pallidumipsiVP3
Ventral pallidum dorsolateral partipsiVPdl1
Ventral pallidum lateral partipsiVPlp4
Ventral pallidum medial partipsiVPm4
Ventral pallidum rostral partipsiVPr1
Ventral pallidum subcommissural partipsiVPsc4
Ventral pallidum ventral partipsiVPV1
StriatumipsiSTR2
Accumbens nucleusipsiAc1.5
Accumbens nucleus coreipsiAcbC2
Lateral accumbens shellipsiAcbShl1
Lateral two thirds of the nucleus accumbensipsiAcLtt1
Medial half of the nucleus accumbensipsiAcbMh-0.5
Caudate putamenipsiCPu2
Medial striatumipsiCPum1
Dorsal striatumipsiCPud3
Rostral striatumipsiCPur1
Ventral striatumipsiCPuv3
Ventrolateral striatumipsiCPuvl3
Ventromedial striatumipsiCPuvm1.5
Subthalamic nucleusipsiSTh1
Subthalamic nucleus rostrodorsal partipsiSThRD2
Subthalamic nucleus rostroventral partipsiSThRV1
Subthalamic nucleus ventromedial partipsiSThvm-0.5
Cerebral cortexipsiCEC2
Retrosplenial granular cortex caudal part layer 6 deep partipsiRSGc6d-0.5
Limbic regionsipsiLR0
Cingulate cortexipsiCg3
Cingulate cortex area 2 deep half of layer 6ipsiCg2dhL6-0.5
Frontal association cortexipsiFrA4
Frontal association cortex dorsal partipsiFrAd-0.5
Frontal association cortex lateral aspectipsiFrALA-0.5
Frontal cortex area 1ipsiFr13
Frontal cortex area 1 layer 1ipsiFr1L13
Frontal cortex area 1 layer 1 outer quarteripsiFr1L1oq-0.5
Frontal cortex area 2ipsiFr23
Frontal cortex area 2 layer 3ipsiFr2L3-0.5
Frontal cortex area 3ipsiFr33
Frontal association cortex medial partipsiFrAM-0.5
Parietal association cortexipsiPtA2
Temporal association area 3ipsiTe30
Auditory regionsipsiAU-0.5
Agranular insular cortexipsiAI2
Agranular insular cortex ventral part jaw movement areaipsiAIVjm-0.5
Perirhinal cortexipsiA350
Prefrontal cortexipsiPFC2
Motoric regionsipsiM4
Lateral agranular prefrontal cortexipsiAGl1
Caudal forelimb motor areaipsiCFMA2
Rostral forelimb motor areaipsiRFMA2
Orofacial motor cortexipsiOFCx2
Jaw movement motor cortexipsiJMCx1.5
Medial prefrontal cortexipsimPFC2
Medial agranular prefrontal cortexipsiAGm1
Sensory regionsipsiSR2
Primary somatosensory cortex barrel fieldipsiS1BF1
Primary somatosensory cortex forelimb regionipsiS1FL2
Sensory regions rostral partipsiSRro2
Visual regionsipsiVR0
Dorso-lateral sectorof the occipital cortexipsiVRDL-0.5
Primary visual cortexipsiV11
Lateral orbital cortexipsiLO1
Ventral orbital cortexipsiVO1
Ventrolateral orbital areaipsiVLO0
Olfactory tubercleipsiTuO0
Olfactory tubercle rostral partipsiTuOr0
Nuclei of the lateral lemniscuscontraNLL0.5
Central tegmental field dorsal partcontraTGACd0
Peduncularpontine nucleus peribrachial regioncontraPPNpb1
Substantia nigra A9contraSN0
Substantia nigra reticular partcontraSNR1
Ventral tegmental area A10contraVTA1
Lateral tegmental nucleuscontraLTN1
Laterodorsal tegmental nucleuscontraLDTg0
Ventral tegmental nucleuscontraVTg0
Dorsal tegmental nucleuscontraDTg0
Pedunculopontine tegmental nucleuscontraPPTg1
Ansiform lobule crus 2a paramedian partcontraCrus2ap-10
Locus coeruleuscontraLC1
Mesencephalic reticular formationcontraMRF1
Pontine reticular nucleus oral partcontraPnO1
Pontine reticular nucleus caudal partcontraPNC1
Lateral parabrachial nucleuscontraLPB0.5
Parabrachial nucleus medialcontraPBnMe-0.5
Parafascicular thalamic nucleuscontraPF0.5
Parafascicular thalamic nucleus lateral partcontraPFL0
Parafascicular thalamic nucleus medial partcontraPFM0
Subparafascicular thalamic nucleus caudal partcontraSPFc0.5
Subparafascicular thalamic nucleus medial partcontraSPFme0.5
Subparafascicular thalamic nucleus rostral partcontraSPFr0.5
Zona incertacontraZI1
Rostral part of claustrumcontraRCl0
Globus palliduscontraGP3
Cingulate cortexcontraCg0
Frontal cortex area 1contraFr10
Frontal cortex area 2contraFr20
Frontal cortex area 3contraFr30
Agranular insular cortexcontraAI1
Jaw movement motor cortexcontraJMCx1
Primary somatosensory cortex barrel fieldcontraS1BF0
Primary somatosensory cortex forelimb regioncontraS1FL0
Cervical segment 1contraCS1-0.5
Cervical segment 2contraCS2-0.5
Cervical segment 3contraCS3-0.5
Cervical segment 4contraCS4-0.5
Cervical segment 5contraCS5-0.5

Input from

NameSideAbbr.WeightDetails
Central gray lateral ventral partipsiCGVD1
Mesencephalic peribrachial regionipsiMECPB2
Nucleus of DarkschewitschipsiDk1
Periaqueductal grayipsiPAG2
Ventral periaqueductal grayipsiVPAG1.5
Periventricular gray matteripsiPVG1
Red nucleusipsiR2
Red nucleus parvicellular partipsiROC2
Inferior colliculusipsiICOL1
Superior colliculusipsiSC1
Superior colliculus lateral partipsiSCL-0.5
Superior colliculus superficial layersipsiSCs1
Superior colliculus intermediate and deep layersipsiSCidLa-0.5
Superior colliculus intermediate layersipsiSCi2
Superior colliculus deep layersipsiSCd2.5
Deep gray layer of the superior colliculusipsiDpG2
Superior colliculus medial partipsimSC0.5
Superior colliculus rostral partipsirSC2
Superior colliculus ventrolateral partipsiSCVL0
Tegmental areaipsiTGA1
Midbrain extrapyramidal areaipsiMEA3
Peduncularpontine nucleusipsiPPN3
Peduncularpontine nucleus caudal levelsipsiPPNCa2
Peduncularpontine nucleus rostral partipsiPPNR-0.5
Substantia nigra A9ipsiSN2
Substantia nigra compact partipsiSNC3
Substantia nigra compact part ventral tier dopaminergic neuron populationipsiSNCVdopa0.5
Substantia nigra lateral partipsiSNL2
Substantia nigra reticular partipsiSNR2
Ventral tegmental area A10ipsiVTA3
Retrorubral nucleusipsiRR2
Laterodorsal tegmental nucleusipsiLDTg2
Dorsal tegmental nucleusipsiDTg1
Dorsal tegmental nucleus lateral partipsiDLTN1
Pedunculopontine tegmental nucleusipsiPPTg3
Pedunculopontine tegmental nucleus caudolateral partipsiPPTgcL2
Pedunculopontine tegmental nucleus pars compactaipsiPPNC2
Pedunculopontine tegmental nucleus pars dissipataipsiPPNd3
Pedunculopontine tegmental nucleus rostral partipsiPPTgR2
Pedunculopontine tegmental nucleus type 1 neuronsipsiPPTgt1n-0.5
Pedunculopontine tegmental nucleus type 2 neuronsipsiPPTgt2n-0.5
Interstitial nucleus of CajalipsiInC1
Cerebellar hemisphereipsiCEREBH1
Interposed cerebellar nucleiipsiICN1
Lateral cerebellar nucleusipsiCERL2
Lateral cerebellar nucleus parvicellular partipsiLatPC2
A5 noradrenaline cellsipsiA52
Locus coeruleusipsiLC2
Pontomesencephalic grayipsiPoMG-0.5
Pontine nuclei caudal partipsiBPNc1
Intermediate reticular nucleusipsiIRt1
Magnocellular reticular nucleusipsiNRMC1
Paramedian reticular nucleusipsiPMn1
Mesencephalic reticular formationipsiMRF3
Deep mesencephalic nucleusipsiDpMe2
Deep mesencephalic nucleus lateral partipsiDpMeL0
Pontine reticular nucleusipsiPRN2
Pontine reticular nucleus oral partipsiPnO3
Pontomesencephalic reticular formationipsiPMRF1
Pontine reticular nucleus caudal partipsiPNC0.5
Peribrachial regionipsiPBR3
Cuneiforme nucleusipsiCnF2
Parabrachial nucleusipsiPB3
Parabrachial nucleus lateral crescentipsiPBlc2
Pontine taste areaipsiPTA-2
Gigantocellular reticular nucleusipsiGi1
Gigantocellular reticular nucleus alpha partipsiGiA0.5
Parvicellular reticular nucleusipsiPCRt1
Subcoeruleus nucleusipsiSubC2
Paratrigeminal nucleusipsiPa5-0.5
Motor trigeminal nucleusipsiMo53
Principal sensory trigeminal nucleusipsiPr53
Spinal trigeminal nucleusipsiSp5nc3
Spinal trigeminal nucleus caudal partipsiSp5C1
Spinal trigeminal nucleus interpolar partipsiSp5I2
Caudal part of spinal trigeminal nucleus oral partipsiSp5Oc3
Superior vestibular nucleusipsiSuVe0.5
Lateral vestibular nucleusipsiLVe0.5
Nucleus of the solitary tractipsiSol-0.5
Raphe nucleiipsiRAN2
Dorsal raphe nucleusipsiDR4
Dorsal raphe nucleus central partipsiDRcep-0.5
Dorsal raphe nucleus dorsal partipsiDRD1.5
Dorsal raphe nucleus lateral partipsiDRLa3
Dorsal raphe nucleus rostral partipsiDRr-0.5
Dorsal raphe nucleus ventral partipsiDRV3
Median raphe nucleusipsiMnR1.5
Superior central raphe nucleusipsiCS1.5
Pontine raphe nucleusipsiPnR1.5
Raphe magnus nucleusipsiRMg0.5
Raphe obscurus nucleusipsiROb0.5
Dorsal column nucleiipsiDCN2
Cuneate nucleusipsiCu3
Anteroposterior part of cuneate nucleusipsiCuAP1.5
Gracile nucleus principal partipsiGr3
Rostral part of gracile nucleusipsiGrR1.5
Nucleus ZipsiZ0
Rostral ventral respiratory groupipsiRVRG1
Endopiriform systemipsiEnN2
Nucleus of the horizontal limb of the diagonal bandipsiHDB0
Nucleus of the vertical limb of the diagonal bandipsiVDB0
Substantia innominataipsiSI3
Medial preoptic nucleusipsiMPO1
Lateral hypothalamic areaipsiLH2.5
Lateral hypothalamic area perifornical partipsiPFx3
Anterior hypothalamic areaipsiAHA2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Posterior hypothalamic areaipsiPHA2
Ventromedial hypothalamic nucleusipsiVMH2
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP-0.5
Mammillary bodyipsiCMAM1
A8 dopamine cells retrorubral groupipsiRRF2
Central medial thalamic nucleusipsiCM3
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC2
Parafascicular thalamic nucleusipsiPF3
Parafascicular thalamic nucleus dorsolateral partipsiPFdL2
Parafascicular thalamic nucleus lateral partipsiPFL2
Parafascicular thalamic nucleus lateral to the fasciculus retroflexusipsiPFLfr0
Parafascicular thalamic nucleus medial partipsiPFM2
Parafascicular thalamic nucleus rostral partipsiPFr2
Parafascicular thalamic nucleus ventrolateral partipsiPFvl2
Posterior thalamic nuclear groupipsiPo2
Suprageniculate thalamic nucleusipsiSG-1
Ventral part of the lateral thalamusipsiVLAT-2
Mediodorsal thalamic nucleusipsiMD2
Midline group of the dorsal thalamusipsiMTN-0.5
Ventro anterior thalamic nucleusipsiVA1
Ventrolateral thalamic nucleusipsiVL1
Ethmoid thalamic nucleusipsiEth3
Intralaminar nucleiipsiILN-0.5
Intralaminar nuclei anterior partipsiILNA0.5
Parafascicular centre-median complexipsiPFCM1
Ventral thalamusipsiVNT2
Reticular thalamic nucleusipsiRt2
Reticular thalamic nucleus rostrocaudal partipsiRtrc1
Subparafascicular thalamic nucleusipsiSPF1
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Zona incertaipsiZI2.5
Nucleus of the fields of ForelipsiF1
Lateral habenular nucleusipsiLHb2
Medial habenular nucleusipsiMHb2
Anterior pretectal nucleusipsiAPT2
Anterior pretectal nucleus posterior partipsiAPTP1
Posterior pretectal nucleusipsiPPT1
Cerebral peduncle basal partipsicp1
Anterior basolateral nucleusipsiBLA2
Dorsolateral part of the lateral nucleusipsiLaDL2
Bed nucleus of the stria terminalisipsiBST1
Bed nucleus of the stria terminalis oval nucleusipsiBSTo0.5
Bed nucleus of the stria terminalis lateral divisionipsiBSTL1
Central amygdaloid nucleusipsiCe2
Central amygdaloid nucleus lateral divisionipsiCeL-0.5
Central amygdaloid nucleus lateral division capsular partipsiCeC2
ClaustrumipsiCl1
Globus pallidusipsiGP4
Caudal globus pallidusipsiGPc3
Dorsal globus pallidusipsiDGP3
Globus pallidus anterior portionipsiGPAp2
Lateral globus pallidusipsiLGP3
Lateral globus pallidus ventral half of bordersipsiLGPvhb2
Medial globus pallidusipsiMGP2
Caudal part of medial globus pallidus rostral partipsiMGPrc2
Peripallidal regionipsiPePa0
Rostral globus pallidusipsiGPr3
Subpallidal regionipsiSuPa0
Ventral pallidumipsiVP3
Ventral pallidum dorsal partipsiVPd1
Ventral pallidum dorsolateral partipsiVPdl2
Ventral pallidum lateral partipsiVPlp3
Ventral pallidum ventromedial partipsiVPvm1
Large cells of the globus pallidusipsiGPLC0.5
Small cells of the globus pallidusipsiGPsc3
Globus pallidus central partipsiGPce2
Globus pallidus outer neuronsipsiGPon-0.5
Globus pallidus inner neruonsipsiGPin-0.5
Accumbens nucleusipsiAc2
Dorsal coreipsiAcbCd3
Lateral coreipsiAcbCl1
Ventral coreipsiAcbCv1
Caudate putamenipsiCPu3
Anteromedial striatumipsiCPuam2
Dorsomedial caudate putamenipsiCPuDM0
Caudal striatumipsiCPuc3
Dorsal striatumipsiCPud3
Rostral striatumipsiCPur1
Ventral striatumipsiCPuv2
Caudate putamen tailipsiCPuT0
Middle-third of the caudate putamenipsiCPuMit2
Subthalamic nucleusipsiSTh1
Subthalamic nucleus dorsal partipsiSThd-0.5
Cerebral cortexipsiCEC3
Retrosplenial regionsipsiRS2
Retrosplenial dysgranular cortexipsiRSdys3
Retrosplenial granular cortexipsiRSGra2
Area 29dipsiA29d1
Retrosplenial granular cortex c regionipsiRSGc1
Cerebral cortex layer 5ipsiCCL52
Anterior cingulate cortexipsiACC2
Anterior cingulate cortex anterior partipsiACCa1
Cingulate cortex area 1ipsiCg12
Cingulate cortex area 1 caudal partipsiCg1c1
Cingulate cortex area 2ipsiCg22
Cingulate cortex area 2 caudal partipsiCg2c1
Dorsal anterior cingulate cortexipsiDACC2
Prelimbic cortexipsiPrL1
Prelimbic cortex dorsal partipsiPrLd1
Prelimbic cortex ventral partipsiPrLv0.5
Infralimbic cortexipsiIL2
NeocortexipsiNEOCX1
Frontal association cortexipsiFrA1
Frontal cortex area 2ipsiFr22
Frontal cortex area 3ipsiFr32
Parietal cortex posterior areaipsiParP-0.5
Parietal association cortex anterior areaipsiPtAA-0.5
Auditory regionsipsiAU0
Primary auditory cortexipsiAu11
Insular cortexipsiICX2
Agranular insular cortexipsiAI2
Agranular insular cortex dorsal partipsiAID1
Agranular insular cortex posterior partipsiAIP1
Agranular insular cortex ventral part jaw movement areaipsiAIVjm-0.5
Dorsal insular cortexipsiDICX2
Granular insular cortexipsiGI1.5
Dorsal part of the granular insular cortex rostroventrally adjacent to the rostralmost part of S2ipsidGlrvs22
Lateral agranular prefrontal cortexipsiAGl3
Caudal part of lateral agranular prefrontal cortexipsiAGlc3
Caudal forelimb motor areaipsiCFMA2
Rostral forelimb motor areaipsiRFMA2
Medial part of lateral agranular prefrontal cortexipsiAGlm2
Rostral part of lateral agranular prefrontal cortexipsiAGlr2
Rostral part of lateral agranular prefrontal cortex layer 5ipsiAGlrL53
Orofacial motor cortexipsiOFCx2
Jaw movement motor cortexipsiJMCx1.5
Medial prefrontal cortexipsimPFC3
Medial agranular prefrontal cortexipsiAGm3
Medial agranular prefrontal cortex medial partipsimAGm2
Medial agranular prefrontal cortex rostral partipsirAGm1
Medial agranular prefrontal cortex rostral part layer 5ipsirAGmL52
Primary somatosensory cortexipsiS13
Primary somatosensory cortex posterior partipsiS1p-0.5
Primary somatosensory cortex rostral partipsiS1r1.5
Secondary somatosensory cortexipsiS21
Visual regionsipsiVR0
Primary visual cortexipsiV12
Secondary visual cortexipsiV20.5
Secondary visual cortex lateral areaipsiV2L0.5
Lateral orbital cortexipsiLO1
Ventrolateral orbital areaipsiVLO1
Nucleus of the posterior commissureipsiPCom2
Ventral lateral geniculate nucleusipsiVLG-2
Medial geniculate nucleus dorsal partipsiMGD-1
Medial geniculate nucleus dorsal part medial subdivisionipsiMGDm-1
Olfactory tubercleipsiTuO0
Spinal cordipsiMES-0.5
Mesencephalic peribrachial regioncontraMECPB1
Nucleus of DarkschewitschcontraDk1
Peduncularpontine nucleuscontraPPN2
Substantia nigra A9contraSN-0.5
Substantia nigra compact partcontraSNC-0.5
Substantia nigra lateral partcontraSNL-0.5
Substantia nigra reticular partcontraSNR-0.5
Pedunculopontine tegmental nucleuscontraPPTg3
Pedunculopontine tegmental nucleus pars compactacontraPPNC1
Pedunculopontine tegmental nucleus pars dissipatacontraPPNd1
Cerebellar hemispherecontraCEREBH1
Locus coeruleuscontraLC0.5
Mesencephalic reticular formationcontraMRF0.5
Pontine reticular nucleus caudal partcontraPNC0.5
Peribrachial regioncontraPBR3
Gigantocellular reticular nucleuscontraGi0.5
Gigantocellular reticular nucleus alpha partcontraGiA0.5
Parvicellular reticular nucleuscontraPCRt2
Principal sensory trigeminal nucleuscontraPr53
Spinal trigeminal nucleus interpolar partcontraSp5I2
Spinal trigeminal nucleus oral partcontraSp5O2
Superior vestibular nucleuscontraSuVe0.5
Lateral vestibular nucleuscontraLVe0.5
Dorsal raphe nucleuscontraDR0.5
Pontine raphe nucleuscontraPnR0.5
Raphe magnus nucleuscontraRMg0.5
Raphe obscurus nucleuscontraROb0.5
Cuneate nucleuscontraCu2
Gracile nucleus principal partcontraGr2
Lateral paragigantocellular nucleuscontraLPGi2
Rostral ventral respiratory groupcontraRVRG1
Medial preoptic nucleuscontraMPO-0.5
Parafascicular thalamic nucleuscontraPF0.5
Zona incertacontraZI2
Nucleus of the fields of ForelcontraF2
Central amygdaloid nucleuscontraCe-1
Globus palliduscontraGP1
Caudate putamencontraCPu0
Frontal cortex area 2contraFr21
Agranular insular cortexcontraAI1
Dorsal part of the granular insular cortex rostroventrally adjacent to the rostralmost part of S2contradGlrvs20
Lateral agranular prefrontal cortexcontraAGl-0.5
Jaw movement motor cortexcontraJMCx1
Nucleus of the posterior commissurecontraPCom2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications