University of Rostock

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Rat connectome



Rostral striatum left


Abbreviation
CPur
Color       
Superior regionsCaudate putamen

SynonymsAbbr.Language
Striatum rostral partSTRr 
Caudate putamen complex head  
Head of the caudate nucleus Eng
Rostral striatumCPurEng
Rostral part of the caudate putamen Eng
Rostral striatum  
Caudate putamen rostral part Eng

SubregionsSide
Central region of the caudate putamen rostral partleft
Dorsolateral region of the rostral striatumleft
Dorsomedial part of rostral striatumleft
Dorsoventral caudate putamen rostral partleft
Rostral striatum chemoarchitectonic compartmentsleft
Rostral striatum dorsolateral partleft
Rostral striatum ventromedial partleft
Rostral two-thirds of the striatumleft
Rostrocaudal striatumleft
Rostrodorsal striatumleft
Rostrolateral striatumleft
Rostromedial striatumleft
Rostroventral striatumleft
Caudate putamen rostrobasal partleft
Rostral striatum medial partleft
Rostral half of the caudate putamenleft
Rostral most region of the striatumleft
Striatum rostrodorsal partleft
Rostrocaudal region of the caudate putamenleft

Output to

NameSideAbbr.WeightDetails
Red nucleus lateral partipsiRedLa1
Substantia nigra A9ipsiSN1
Substantia nigra A9 dorsal partipsiSND1
Substantia nigra compact partipsiSNC1
Substantia nigra compact part medial tieripsiSNCM2
Substantia nigra compact part rostral tier dorsolateral regionipsiSNCrdL2
Substantia nigra lateral partipsiSNL2
Substantia nigra medial partipsiSNM1
Substantia nigra reticular partipsiSNR1
Ventral tegmental area A10ipsiVTA1
Lateral hypothalamic areaipsiLH-0.5
Lateral group of the dorsal thalamusipsiLAT-0.5
Zona incertaipsiZI1
Nucleus of the fields of ForelipsiF1
Optic tractipsiopt1
Internal capsuleipsiic-0.5
Cerebral peduncle basal partipsicp1
Medial lemniscusipsiml1
Medial globus pallidusipsiMGP-0.5
Medial globus pallidus caudal partipsiMGPc3
Medial globus pallidus rostral partipsiMGPr3
Rostral globus pallidusipsiGPr2
Rostral coreipsiAcbCr-0.5
Rostral pole of the accumbens nucleusipsiAcbRP-0.5
Rostral accumbens shellipsiAcbShr-0.5
Caudate putamenipsiCPu-0.5
Caudal striatumipsiCPuc0
Caudate putamen caudolateral partipsiCPucl-0.5
Subthalamic nucleusipsiSTh1
Cingulate cortex area 2 caudal partipsiCg2c2
Olfactory tubercleipsiTuO-0.5

Input from

NameSideAbbr.WeightDetails
Substantia nigra A9ipsiSN4
Substantia nigra compact partipsiSNC4
Substantia nigra compact part caudal tieripsiSNCC1.5
Substantia nigra compact part dorsal tieripsiSNCD2
Substantia nigra compact part lateral tieripsiSNCL3
Substantia nigra compact part medial tieripsiSNCM3
Medial third of the substantia nigra compact partipsiSNCMt-0.5
Substantia nigra compact part rostral tieripsiSNCr3
Substantia nigra compact part ventral tieripsiSNCV2
Substantia nigra compact part anteroposterior partipsiSNCap-0.5
Substantia nigra lateral partipsiSNL1
Substantia nigra reticular partipsiSNR1
Substantia nigra reticular part caudal tieripsiSNRca-0.5
Substantia nigra reticular part caudal tier medial partipsiSNRcaM-0.5
Substantia nigra reticular part caudal tier central partipsiSNRcace-0.5
Substantia nigra reticular part lateral tieripsiSNRL1
Substantia nigra reticular part medial tieripsiSNRm-0.5
Substantia nigra reticular part medial tier mediallyipsiSNRmm-0.5
Substantia nigra reticular part medial tier centrallyipsiSNRmce-0.5
Substantia nigra reticular part medial tier laterallyipsiSNRmLa-0.5
Substantia nigra reticular part rostral tieripsiSNRro2
Ventral tegmental area A10ipsiVTA3
Retrorubral nucleusipsiRR0
Dorsal raphe nucleusipsiDR1
Dorsal raphe nucleus central partipsiDRcep2
Dorsal raphe nucleus median partipsiDRM1
Dorsal raphe nucleus rostral partipsiDRr2
Dorsoventral extent of the dorsal raphe nucleusipsiDRdv-0.5
Dorsal raphe nucleus mediolateral partipsiDRML-0.5
Anterior group of the dorsal thalamusipsiATN-0.5
Anteromedial thalamic nucleusipsiAM-0.5
Anteromedial thalamic nucleus caudal partipsiAMc1
Anteromedial thalamic nucleus intermediate partipsiAMi1
Intralaminar nuclei of the dorsal thalamusipsiILM-0.5
Gelatinosus thalamic nucleusipsiG-0.5
Paracentral thalamic nucleus posterior partipsiPCp1
Parafascicular thalamic nucleusipsiPF4
Parafascicular thalamic nucleus rostral partipsiPFr-0.5
Rhomboid thalamic nucleusipsiRh-0.5
Posterior thalamic nuclear groupipsiPo0
Mediodorsal thalamic nucleusipsiMD2
Mediodorsal thalamic nucleus caudal poleipsiMDCaP0
Midline group of the dorsal thalamusrostral regionsipsiMRTN-0.5
Paratenial thalamic nucleusipsiPT-0.5
Ventro anterior thalamic nucleusipsiVA2
Ventrolateral thalamic nucleusipsiVL2
Ventral posteromedial thalamic nucleus parvicellular partipsiVPMpc-0.5
Ventral posteromedial thalamic nucleus magnocellular partipsiVPMma-0.5
Ventromedial thalamic nucleusipsiVM2
Parafascicular nucleusipsiPFa-0.5
Lateral posterior thalamic nucleusipsiLP-0.5
Medial thalamic zoneipsiMTZ-0.5
Ventral medial nucleus of the thalamusipsiVMT1.5
Ventral thalamus dorsomedial partipsiVNTdm-0.5
Ventral thalamus rostral partipsiVNTR-0.5
Amygdaloid complexipsiAC0
Basolateral amygdaloid nucleusipsiBL1
Basolateral nucleus caudal partipsiBLCP0
Basolateral nucleus rostral partipsiBLRP0
Basomedial amygdaloid nucleusipsiBM0
Lateral amygdaloid nucleusipsiLA0
Central amygdaloid nucleus intermediate divisionipsiCeI0
Posterior amygdaloid nucleusipsiCOAp-1
Nucleus of the lateral olfactory tractipsiLOT-1
Periamygdaloid cortex layer 2ipsiPACL2-1
Amygdalohippocampal areaipsiAHi-1
Globus pallidusipsiGP-0.5
Rostral globus pallidusipsiGPr2
Ventral pallidumipsiVP1
Subthalamic nucleusipsiSTh1
Subiculum ventral partipsiSv3
Retrosplenial regionsipsiRS-0.5
Cingulate cortexipsiCg1
Cingulate cortex area 1ipsiCg13
Cingulate cortex area 2ipsiCg2-0.5
Infralimbic cortexipsiIL1
Parietal association cortex layer 3ipsiParPLa32
Parietal association cortex layer 4ipsiParPLa42
Parietal association cortex layer 5ipsiParPLa53
Parietal association cortex layer 6ipsiParPLa62
Parietal association cortex layer 2ipsiParPLa22
Agranular insular cortex dorsal partipsiAID1
Agranular insular cortex posterior partipsiAIP-0.5
Anterior insular cortex layer 2ipsiICXaL22
Anterior insular cortex layer 3ipsiICXaL32
Anterior insular cortex layer 4ipsiICXaL42
Anterior insular cortex layer 5ipsiICXaL53
Anterior insular cortex layer 6ipsiICXaL62
Dysgranular insular cortexipsiDI4
Gustatory dysgranular insular cortexipsiDIg-0.5
Granular insular cortex caudal partipsiGIC1.5
Insular cortex layer 2ipsiICXL22
Insular cortex layer 3ipsiICXL32
Insular cortex layer 4ipsiICXL42
Insular cortex layer 5ipsiICXL53
Insular cortex layer 6ipsiICXL62
Perirhinal cortexipsiA351
Lateral agranular prefrontal cortexipsiAGl-0.5
Rostral forelimb motor areaipsiRFMA2
Lateral agranular prefrontal cortex layer 2ipsiAGlL22
Lateral agranular prefrontal cortex layer 3ipsiAGlL32
Lateral agranular prefrontal cortex layer 5ipsiAGlL53
Lateral agranular prefrontal cortex layer 6ipsiAGlL62
Orofacial motor cortexipsiOFCx1
Medial prefrontal cortexipsimPFC3
Medial prefrontal cortex layer 5ipsimPFCL53
Medial prefrontal cortex layer 6ipsimPFCL62
Medial prefrontal cortex layer 3ipsimPFCL32
Medial prefrontal cortex layer 4ipsimPFCL42
Medial prefrontal cortex layer 2ipsimPFCL22
Medial agranular prefrontal cortex caudal partipsicAGm1
Medial agranular prefrontal cortex rostral partipsirAGm3
Posteromedial barrel subfield C2ipsiPMBSFC21.5
Posteromedial barrel subfield D1ipsiPMBSFD11.5
Posteromedial barrel subfield D2ipsiPMBSFD21.5
Posteromedial barrel subfield D5ipsiPMBSFD51.5
Secondary visual cortex mediolateral areaipsiV2ML-0.5
Secondary visual cortex mediomedial areaipsiV2MM-0.5
Secondary visual cortex rostral partipsiV2R3
Ventrolateral orbital areaipsiVLO0
Dorsal geniculate nucleusipsiDLG3
Substantia nigra A9contraSN0.5
Substantia nigra compact partcontraSNC0.5
Substantia nigra lateral partcontraSNL1
Substantia nigra reticular partcontraSNR0
Ventral tegmental area A10contraVTA0.5
Retrorubral nucleuscontraRR0.5
Basolateral amygdaloid nucleuscontraBL0.5
Basolateral nucleus caudal partcontraBLCP0
Basolateral nucleus rostral partcontraBLRP0
Basomedial amygdaloid nucleuscontraBM0
Central amygdaloid nucleus intermediate divisioncontraCeI0
Agranular insular cortex dorsal partcontraAID0.5
Caudal forelimb motor areacontraCFMA1
Orofacial motor cortexcontraOFCx1
Medial prefrontal cortexcontramPFC1
Medial agranular prefrontal cortex rostral partcontrarAGm2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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