University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Limbic regions left


Abbreviation
LR
Color       
Superior regionsMesocortex

SynonymsAbbr.Language
 MFC 
 PCA 
Limbic regionsLREng
Polymodal association cortex Eng
Limbic system  
Limbic cortex Eng
Medial cortex  
Limbic forebrain Eng

SubregionsSide
Borders of the limbic cortexleft
Cingulate cortexleft
Prelimbic cortexleft
Retrolimbic arealeft
Infralimbic arealeft
Ventral limbic arealeft
Frontolimbic cortexleft
Area prostriataleft

Output to

NameSideAbbr.WeightDetails
Nucleus of DarkschewitschipsiDk-0.5
Periaqueductal grayipsiPAG-0.5
Periaqueductal gray rostral partipsiPAGR3
Superior colliculus intermediate layersipsiSCi-0.5
Ventral tegmental area A10ipsiVTA2
Ventrolateral tegmental areaipsiVLTg-0.5
Supraoptic nucleus [Supraoptic region]ipsiSO-0.5
Central medial thalamic nucleusipsiCM3
Centrolateral thalamic nucleusipsiCL3
Mediodorsal thalamic nucleusipsiMD-0.5
Paratenial thalamic nucleusipsiPT-0.5
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Laterodorsal thalamic nucleusipsiLD-0.5
Anterior pretectal nucleusipsiAPT3
Bed nucleus of the stria terminalis anterior divisionipsiBSTA1.5
Caudate putamenipsiCPu-0.5
Anterior piriform cortexipsiAPIRC2
Retrosplenial agranular cortexipsiRSA-0.5
Retrosplenial granular cortex subdivisionsipsiRSGsu-0.5
Frontal cortex area 1ipsiFr1-0.5
Frontal cortex area 2ipsiFr2-0.5
Parietal association cortexipsiPtA-0.5
Primary visual cortexipsiV1-0.5
Secondary visual cortex medial area layersipsiV2MLa-0.5
Secondary visual cortex mediomedial areaipsiV2MM-0.5
Secondary visual cortex lateral areaipsiV2L-0.5
Primary visual cortex binocular areaipsiV1B-0.5
Primary visual cortex monocular areaipsiV1M-0.5
Central medial thalamic nucleuscontraCM3
Centrolateral thalamic nucleuscontraCL3
Caudate putamencontraCPu-0.5
Cingulate cortex area 1contraCg1-0.5

Input from

NameSideAbbr.WeightDetails
Ventral tegmental area A10ipsiVTA2
Ventral tegmental nucleusipsiVTg-0.5
Locus coeruleus caudal partipsiLCca1
Locus coeruleus medial partipsiLCcBM3
Locus coeruleus rostral partipsiLCRo1
Parabrachial nucleusipsiPB2
Rostral ventrolateral medullaipsiRVLM-0.5
Nucleus of the horizontal limb of the diagonal band medial borderipsiHDBmb-0.5
Nucleus of the vertical limb of the diagonal band ventrolateral partipsiVDBVL-0.5
Substantia innominata nucleus basalis complexipsiSiNBC-0.5
Substantia innominata nucleus basalis complex medial partipsiSiNBCM-0.5
Substantia innominata nucleus basalis complex rostral partipsiSiNBCR-0.5
Lateral hypothalamic areaipsiLH1
Anteromedial thalamic nucleusipsiAM-0.5
Gelatinosus thalamic nucleusipsiG0
Paracentral thalamic nucleusipsiPC0
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt0
Laterodorsal thalamic nucleusipsiLD-0.5
Subthalamic nucleusipsiSTh0
Rostral ventrolateral medullacontraRVLM-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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