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Rat connectome



Spinal cord layer 9 T13 left


Abbreviation
SCL9T13
Color       
Superior regionsVentral horn T13

SynonymsAbbr.Language
Spinal cord layer 9 T13SCL9T13Eng

Output to

NameSideAbbr.WeightDetails
Lateral periaqueductal grayipsiLPAG1
Posterior lobe of the cerebellumipsiCERCPL-0.5
Paramedian lobuleipsiPM3
Lateral portion of the paramedian lobuleipsiLaPM3
Anterior lobeipsiAnL3
Caudal part of cerebellumipsiCERCca3
Cerebellar lobule 7ipsiCERL73
Cerebellar lobule 8ipsiCERL83
Gigantocellular reticular nucleusipsiGi-0.5
Raphe pallidus nucleusipsiRPa1
Vasodepressor part of caudal midline medulla oblongataipsiCMeObmVd2
Lateral paragigantocellular nucleusipsiLPGi-0.5
Cervical segment 5ipsiCS50.5
Cervical segment 6ipsiCS60.5
Paramedian lobulecontraPM3
Anterior lobecontraAnL3
Caudal part of cerebellumcontraCERCca3
Raphe pallidus nucleuscontraRPa1
Ventromedial gray substance at the level of the lumbal segment 4contraL4vmg3
Sciatic nerveipsisci0
Tibial nerveipsitibial-0.5
StomachipsiOrgsStomS-1
Oblique internal muscleipsiMuscOBLint3
Multifidus muscleipsiMuscMuL-0.5
Ischiocavernosus muscleipsiMuscicav-10
Transversospinal muscleipsiMuscTraSpi3
Transversal abdominal muscleipsiMuscTransAbd3
Longissimus muscleipsiMuscLongi-0.5
Lateral longissimus muscleipsiMuscLaLo3
Femoral bone marrowipsiOrgSkFemM-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Red nucleusipsiR2
Ventrolateral tegmental areaipsiVLTg1.5
Interstitial nucleus of CajalipsiInC1.5
A5 noradrenaline cellsipsiA52
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca3
Medial reticular formationipsiRFm-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Pontine reticular nucleusipsiPRN3
Dorsolateral pontine reticular formationipsiPRNDL1
Pontine reticular nucleus oral partipsiPnO2
Pontine reticular nucleus caudal partipsiPNC2
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Gigantocellular reticular nucleus rostral partipsiGiRo-0.5
Lateral reticular nucleusipsiLRt2
Medial subnucleus reticularis ventralisipsiMSRV2
Subcoeruleus nucleusipsiSubC3
Raphe magnus nucleusipsiRMg2
Raphe obscurus nucleusipsiROb2
Raphe pallidus nucleusipsiRPa3
Rostral part of the ventromedial medulla oblongataipsiRMeObvm-0.5
Lateral hypothalamic areaipsiLH1
Paraventricular hypothalamic nucleusipsiPa1
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS11
Secondary somatosensory cortexipsiS21
Area X T8ipsiSCL10T8-0.5
Spinal cord layer 5 T8ipsiSCL5T8-0.5
Spinal cord layer 6 T8ipsiSCL6T8-0.5
Spinal cord layer 3 T8ipsiSCL3T8-0.5
Spinal cord layer 4 T8ipsiSCL4T8-0.5
Spinal cord layer 1 T8ipsiSCL1T8-0.5
Spinal cord layer 2 T8ipsiSCL2T8-0.5
Spinal cord layer 7 T8ipsiSCL7T8-0.5
Spinal cord layer 8 T8ipsiSCL8T8-0.5
Area X T9ipsiSCL10T9-0.5
Spinal cord layer 5 T9ipsiSCL5T9-0.5
Spinal cord layer 6 T9ipsiSCL6T9-0.5
Spinal cord layer 3 T9ipsiSCL3T9-0.5
Spinal cord layer 4 T9ipsiSCL4T9-0.5
Spinal cord layer 1 T9ipsiSCL1T9-0.5
Spinal cord layer 2 T9ipsiSCL2T9-0.5
Spinal cord layer 7 T9ipsiSCL7T9-0.5
Spinal cord layer 8 T9ipsiSCL8T9-0.5
Area X T10ipsiSCL10T10-0.5
Spinal cord layer 5 T10ipsiSCL5T10-0.5
Spinal cord layer 6 T10ipsiSCL6T10-0.5
Spinal cord layer 3 T10ipsiSCL3T10-0.5
Spinal cord layer 4 T10ipsiSCL4T10-0.5
Spinal cord layer 1 T10ipsiSCL1T10-0.5
Spinal cord layer 2 T10ipsiSCL2T10-0.5
Spinal cord layer 7 T10ipsiSCL7T10-0.5
Spinal cord layer 8 T10ipsiSCL8T10-0.5
Area X T11ipsiSCL10T11-0.5
Spinal cord layer 5 T11ipsiSCL5T11-0.5
Spinal cord layer 6 T11ipsiSCL6T11-0.5
Spinal cord layer 3 T11ipsiSCL3T11-0.5
Spinal cord layer 4 T11ipsiSCL4T11-0.5
Spinal cord layer 1 T11ipsiSCL1T11-0.5
Spinal cord layer 2 T11ipsiSCL2T11-0.5
Spinal cord layer 7 T11ipsiSCL7T11-0.5
Spinal cord layer 8 T11ipsiSCL8T11-0.5
Area X T12ipsiSCL10T12-0.5
Spinal cord layer 5 T12ipsiSCL5T12-0.5
Spinal cord layer 6 T12ipsiSCL6T12-0.5
Spinal cord layer 3 T12ipsiSCL3T12-0.5
Spinal cord layer 4 T12ipsiSCL4T12-0.5
Spinal cord layer 1 T12ipsiSCL1T12-0.5
Spinal cord layer 2 T12ipsiSCL2T12-0.5
Spinal cord layer 7 T12ipsiSCL7T12-0.5
Spinal cord layer 8 T12ipsiSCL8T12-0.5
Dorsal root ganglion L1ipsiDRGL13
Dorsal root ganglion L2ipsiDRGL22
Dorsal root ganglion L3ipsiDRGL31
Dorsal root ganglion L4ipsiDRGL40
Dorsal root ganglion L5ipsiDRGL50
Dorsal root ganglion L6ipsiDRGL60
Locus coeruleuscontraLC1
Caudal part of ventral locus coeruleuscontraLCveca0.5
Medial reticular formationcontraRFm-0.5
Pontine reticular nucleus oral partcontraPnO0.5
Pontine reticular nucleus caudal partcontraPNC0.5
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus medial partcontraGiM-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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