University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Myelencephalon right


Abbreviation
MYC
Color       
Superior regionsRhombencephalon

SynonymsAbbr.Language
MyelencephalonMYCEng
Brainstem  

SubregionsSide
Medulla oblongataright
Region between the midlevel of the pyramidal decussation and the caudal border of spinal segment C2right
Spinomedullary junctionright
Anterior brainstemright
Rostral myelencephalonright
Lateral myelencephalonright
Lower brainstemright
Midline nuclei of the brainstemright
Dorsal part of the myelencephalonright
Ventral myelencephalonright
Caudal brainstemright
Ventrolateral brainstemright
Autonomic areas in the brainstemright
Nonauditory brainstem nucleiright
Dorsolateral brainstemright
Dorsomedial brainstemright
Lacrimomuconasal nucleusright
Lacrimo-nasopalatine nucleusright
Transition zone CS1 nucleus nervi facialis and nucleus nervi vestibulocochlearisright
Transition zone CS2 CS3 nucleus nervi facialis and nucleus nervi vestibulocochlearisright

Output to

NameSideAbbr.WeightDetails
Ventral tegmental area A10 lateral partcontraVTAL3
Ventral respiratory group caudal partcontraVCReG1
Medial longitudinal fasciculusipsimlf-2
Periaqueductal gray rostrolateral partipsiPAGRL3
External cortex of the inferior colliculusipsiECIC-0.5
Dorsal cortex of the inferior colliculusipsiDCIC-0.5
Substantia nigra lateral partipsiSNL-0.5
Ventral tegmental area A10 lateral partipsiVTAL3
Ventral respiratory group caudal partipsiVCReG3
Dorsal column nucleiipsiDCN3
Superior salivatory nucleusipsiSuS3
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Arcuate nucleusipsiArc-0.5
Supraoptic nucleus [Supraoptic region]ipsiSO-0.5
Mediodorsal thalamic nucleusipsiMD3
Mediodorsal thalamic nucleus lateral partipsiMDL-0.5
Mediodorsal thalamic nucleus paralemellar divisionipsiMDpL-0.5
Reuniens thalamic nucleusipsiRe-0.5
Subfornical organipsiSFO-0.5
Ventrolateral thalamic nucleusipsiVL-0.5
Ventromedial thalamic nucleusipsiVM-0.5
Reticular thalamic nucleusipsiRt3
Zona incerta ventral partipsiZIV-0.5
HabenulaipsiHAB2
Lateral habenular nucleusipsiLHb2
Lateral habenular nucleus rostral partipsiLHbro1
Medial habenular nucleusipsiMHb2
Lateral portion of the internal capsuleipsiLic2
Amygdaloid complexipsiAC2
Central amygdaloid nucleusipsiCe-0.5
Accumbens nucleusipsiAc2
Caudate putamenipsiCPu2
Caudal striatumipsiCPuc2
Frontal association cortexipsiFrA2
Lateral parietal association cortexipsiLPtA2
Temporal cortexipsiTE2
Olfactory bulb A16ipsiMOB0
Olfactory tubercleipsiTuO2
Intermediomedial cell column C1ipsiIMMC1-0.5
Dorsal horn C1ipsiDHC1-0.5
Dorsal horn C2ipsiDHC2-0.5
Lumbar segmentsipsiLSeg-0.5
Lumbar segment 6ipsiL6-0.5
Superior cervical ganglionipsiAutoSCeG-0.5
Superior laryngeal nerveipsisLn0
Aortic nerveipsiaorticn0
Distal duodenumcontraOrgsDuoD-0.5
Distal duodenumipsiOrgsDuoD1
UriclecontraOrgUtric2
UricleipsiOrgUtric2
Middle earipsiOrgMiEar0
Anterior neck musclesipsiMuscLAN0
Pectoral muscleipsiMuscLPec0

Input from

NameSideAbbr.WeightDetails
Medial agranular prefrontal cortex layer 5 bcontraAGmL5b-0.5
Medial agranular prefrontal cortex layer 6contraAGmL6-0.5
Mid caudal mesencephalonipsimicMEC-2
Medial longitudinal fasciculusipsimlf-2
Dorsal periaqueductal grayipsiDPAG-2
Laterodorsal tegmental nucleusipsiLDTg-0.5
Pedunculopontine tegmental nucleusipsiPPTg-0.5
CerebellumipsiCERE-0.5
Superior cerebellar peduncle lateral partipsisucepL-2
Prepositus nucleusipsiPr3
Vestibular nucleiipsiVnc3
Nucleus of the solitary tractipsiSol-0.5
Paragigantocellular reticular nucleusipsiPGi1
Lateral edge of the brainstemipsiLaMYCe-2
Medial septal nucleus medial partipsiMSm-0.5
Substantia innominataipsiSI-0.5
Nucleus of the ansa lenticularisipsiAL3
Lateral preoptic areaipsiLPO-2
DiencephalonipsiDEC3
Dorsomedial hypothalamic nucleusipsiDMHy2
Lateral hypothalamic areaipsiLH3
Ventromedial hypothalamic nucleusipsiVMH2
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo3
Centrolateral intralaminar nucleusipsiCLILN2
Zona incertaipsiZI3
Lateral habenular nucleusipsiLHb3
Lateral habenular nucleus central partipsiLHbc0
Medial habenular nucleusipsiMHb3
Ventral part of the medial lemniscusipsiveml-2
Amygdaloid complexipsiAC3
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus medial divisionipsiCeM-0.5
Central division of the central amygdaloid nucleusipsiCeCe-0.5
Globus pallidusipsiGP2
Medial globus pallidus caudal one-thirdipsiMGPcot3
Medial globus pallidus rostral partipsiMGPr0
Ventral pallidumipsiVP0.5
Retrosplenial cortexipsiRSCx-0.5
Cingulate cortexipsiCg-0.5
Prelimbic cortex dorsal part layer 5ipsiPrLdL5-0.5
Infralimbic cortexipsiIL-0.5
Deep gray matter of the temporal association cortex 1ipsiTeAdL3
Dorsal peduncular cortexipsiDP-0.5
Motoric regionsipsiM1
Motoric regions layer 5ipsiMRL54
Motoric regions layer 6ipsiMRL64
Medial agranular prefrontal cortex layer 5 bipsiAGmL5b-0.5
Medial agranular prefrontal cortex layer 6ipsiAGmL6-0.5
Secondary somatosensory cortex layer 5ipsiS2L54
Secondary somatosensory cortex layer 6ipsiS2L64
Visual regionsipsiVR-2
Ventrolateral orbital areaipsiVLO-0.5
Nodose ganglioncontraAutoNoG0
Nodose ganglionipsiAutoNoG0
Recurrent laryngeal nerveipsireLa0
OesophaguscontraOrgsOes-0.5
OesophagusipsiOrgsOes-0.5
KidneyipsiOrgsKid-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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