University of Rostock

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Rat connectome



Central medial thalamic nucleus rostral part right


Abbreviation
CMr
Color       
Superior regionsCentral medial thalamic nucleus

SynonymsAbbr.Language
Central medial thalamic nucleus rostral partCMr 
Rostral part of central medial thalamic nucleus rostral part  

SubregionsSide
Central medial thalamic nucleus rostral tipright
Central medial thalamic nucleus rostral halfright

Output to

NameSideAbbr.WeightDetails
Basal forebrainipsiBAF1
Dorsal endopiriform nucleusipsiDEn3
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA1
Tenia tectaipsiTT0
Rhomboid thalamic nucleusipsiRh2
Mediodorsal thalamic nucleusipsiMD1
Paraventricular thalamic nucleus ventral partipsiPVV0
Reuniens thalamic nucleusipsiRe2
Ventromedial thalamic nucleusipsiVM2
Reticular thalamic nucleusipsiRt2
Basolateral amygdaloid nucleusipsiBL2
Basolateral nucleus caudal partipsiBLCP1.5
Rostrocaudal extent of the basolateral amygdaloid nucleusipsiBLRC3
Basomedial amygdaloid nucleusipsiBM3
ClaustrumipsiCl2
Lateral part of claustrumipsiClL3
Accumbens nucleusipsiAc3
Accumbens nucleus coreipsiAcbC1
Accumbens nucleus shellipsiAcbSh3
Anterior accumbensipsiAcbA3
Caudal accumbensipsiAcbCa2
Lateral nucleus accumbensipsiAcl3
Ventromedial accumbensipsiAcbVM3
Caudate putamenipsiCPu1
Dorsomedial striatumipsiCPudm2
Medial striatumipsiCPum3
Dorsomedial caudate putamen caudal partipsiCPucdm3
Dorsal striatumipsiCPud-0.5
Dorsal caudate putamen caudal partipsiCPudca3
Dorsal striatum rostral poleipsiCPudr2
Central region of the caudate putamen rostral partipsiCPuCr3
Dorsoventral caudate putamen rostral partipsiCPuDVr3
Ventral striatumipsiCPuv2
Subthalamic nucleus rostrodorsal one-halfipsiSThRDoh2
Lateral entorhinal cortex deep layersipsiLEntDL1
Anterior piriform cortexipsiAPIRC0
Retrosplenial regionsipsiRS1
Retrosplenial regions dorsomedial partipsiRSdm1
Cingulate cortexipsiCg3
Anterior cingulate cortexipsiACC-0.5
Anterior cingulate cortex caudal partipsiACCc4
Dorsal anterior cingulate cortex layer 3ipsiDACCL32
Dorsal anterior cingulate cortex layer 5ipsiDACCL52
Dorsal anterior cingulate cortex layer 1ipsiDACCL12
Ventral anterior cingulate cortex layer 1ipsiVACCL12
Ventral anterior cingulate cortex layer 3ipsiVACCL32
Ventral anterior cingulate cortex layer 5ipsiVACCL52
Prelimbic cortexipsiPrL1
Prelimbic cortex deep layersipsiPrLDL1.5
Prelimbic cortex rostral partipsiPrLr3
Infralimbic cortexipsiIL1
Infralimbic cortex deep layersipsiILDL1.5
Insular cortexipsiICX3
Agranular insular cortex dorsal partipsiAID1.5
Agranular insular cortex dorsal part caudal regionipsiAIDc4
Lateral part of the dorsal agranular insular cortexipsiAILD3
Ventrolateral part of the dorsal agranular insular cortexipsiAIDVL3
Agranular insular cortex posterior partipsiAIP1
Perirhinal cortexipsiA351
Ectorhinal cortexipsiA361
Lateral agranular prefrontal cortexipsiAGl1.5
Medial prefrontal cortexipsimPFC1.5
Medial prefrontal cortex dorsal partipsimPFCd3
Medial prefrontal cortex dorsomedial partipsimPFCdm3
Medial prefrontal cortex dorsomedial part layer 1ipsimPFCdmL13
Medial prefrontal cortex dorsomedial part layer 2ipsimPFCdmL21.5
Medial prefrontal cortex dorsomedial part layer 3ipsimPFCdmL33
Medial prefrontal cortex dorsomedial part layer 4ipsimPFCdmL41.5
Medial prefrontal cortex dorsomedial part layer 5ipsimPFCdmL51.5
Medial prefrontal cortex dorsomedial part layer 6ipsimPFCdmL63
Medial agranular prefrontal cortexipsiAGm-0.5
Medial agranular prefrontal cortex caudal partipsicAGm3
Medial agranular prefrontal cortex dorsomedial partipsiAGmdm1
Dorsolateral orbital cortexipsiDLO-0.5
Rostral ventrolateral part of the dorsolateral orbital cortexipsiRVLDLO3
Lateral orbital cortexipsiLO-0.5
Medial orbital cortexipsiMO1.5
Anterior olfactory nucleusipsiAON0
Olfactory tubercleipsiTuO2
Olfactory tubercle ventromedial partipsiTuOvm3

Input from

NameSideAbbr.WeightDetails
Parabrachial nucleus ventrolateral partipsiPBveLa-0.5
Anterior hypothalamic nucleusipsiAHn-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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