Department of Anatomy University of Rostock

University of Rostock

Department of Anatomy

Neuroscience Group

Homepage

Staff

neuroVIISAS

Rat connectome

Other connectomes

Neuroimaging

Neurodegeneration

Neuroproteomics

Students

Links

Publications

Rat connectome

Dorsomedial striatum right

Abbreviation	CPudm
Color
Superior regions	Associative striatum

Synonyms	Abbr.	Language
	Strdm
Dorsomedial striatum	CPudm	Eng
Dorsomedial neostriatum		Eng

Subregions	Side
Dorsomedial striatum chemoarchitectonic compartments	right
Dorsomedial striatum dorso-caudal part	right
Dorsomedial striatum rostral part	right
Dorsomedial striatum ventro-caudal part	right
Dorsomedial striatum caudal part	right
Posterior dorsomedial striatum	right

Output to

Name	Side	Abbr.	Weight
Substantia nigra A9	ipsi	SN	2
Substantia nigra reticular part ventral subdivision rostrocaudal extend	ipsi	SNRvRC	-0.5
Substantia nigra reticular part ventromedial tier	ipsi	SNRVM	3
Lateral hypothalamic area	ipsi	LH	2
Globus pallidus	ipsi	GP	2
Globus pallidus mediodorsal part	ipsi	GPmd	3
Lateral globus pallidus	ipsi	LGP	2
Medial globus pallidus	ipsi	MGP	2
Dorsomedial globus pallidus	ipsi	GPDM	2
Accumbens nucleus	ipsi	Ac	2

Input from

Name	Side	Abbr.	Weight
Parafascicular thalamic nucleus medial part	contra	PFM	0
Basolateral amygdaloid nucleus	contra	BL	-0.5
Anterior basolateral nucleus	contra	BLA	1
Basolateral nucleus medial portion	contra	BLmp	3
Basomedial amygdaloid nucleus	contra	BM	1
Lateral amygdaloid nucleus	contra	LA	1
Lateral nucleus medial part	contra	LAM	1
Central amygdaloid nucleus intermediate division	contra	CeI	3
Nucleus of the lateral olfactory tract layer 2	contra	LOTL2	1
Nucleus of the lateral olfactory tract layer 3	contra	LOTL3	1
Periamygdaloid complex	contra	PAC	1
Amygdalohippocampal area	contra	AHi	1
Rostral lateral entorhinal cortex layer 3	contra	EntRoL3	0.5
Lateral entorhinal cortex caudal layer 4	contra	LEntCL4	0.5
Lateral entorhinal cortex layer 3	contra	LEntL3	0.5
Medial entorhinal cortex layer 4	contra	MEntLyL4	1
Medial entorhinal cortex layer 6	contra	MEntLyL6	0.5
Piriform cortex	contra	Pir	0.5
Piriform area polymorph layer [Posterior piriform cortex]	contra	PPIRCPIR3	0.5
Retrosplenial agranular cortex	contra	RSA	2
Anterior cingulate cortex	contra	ACC	1
Anterior cingulate cortex layer 3	contra	ACCL3	0.5
Anterior cingulate cortex layer 6	contra	ACCL6	1
Anterior cingulate cortex rostral part layer 5 a	contra	ACCrL5a	1
Cingulate cortex area 1	contra	Cg1	1
Cingulate cortex area 2	contra	Cg2	1
Dorsal anterior cingulate cortex	contra	DACC	1
Cingulate cortex layer 2	contra	CgL2	-0.5
Cingulate cortex layer 3	contra	CgL3	-0.5
Cingulate cortex layer 5	contra	CgL5	-0.5
Cingulate cortex layer 6	contra	CgL6	-0.5
Rostral part of the cingulate cortex	contra	RCg	2
Prelimbic cortex	contra	PrL	1
Prelimbic cortex layer 5 a	contra	PrLL5a	1
Frontal cortex area 1	contra	Fr1	1
Frontal cortex area 1 layer 6	contra	Fr1L6	-0.5
Frontal cortex area 2	contra	Fr2	1
Frontal cortex area 2 layer 6	contra	Fr2L6	-0.5
Parietal cortex area 1	contra	Par1	1
Parietal cortex area 2	contra	Par2	1
Secondary auditory cortex	contra	Au2	1
Agranular insular cortex	contra	AI	1
Agranular insular cortex anterior part	contra	AIA	1
Agranular insular cortex dorsal part	contra	AID	0
Insular sulcal area	contra	InCA	1
Perirhinal cortex	contra	A35	1
Perirhinal cortex layer 5 a	contra	PRhL5a	1
Medial sulcal area	contra	MeSA	1
Medial sulcal area layer 5 a	contra	MeSAL5a	-0.5
Lateral prefrontal cortex	contra	lPFC	0
Forelimb motor cortex	contra	FMCx	1
Hindlimb motor cortex	contra	HMCx	1
Lateral agranular prefrontal cortex posteromedial part	contra	AGlpm	1
Whiskers motor cortex	contra	WMCx	1
Medial prefrontal cortex	contra	mPFC	1
Sensory regions	contra	SR	0.5
Primary somatosensory cortex hindlimb region	contra	S1HL	1
Central primary visual area	contra	V1Ce	1
Primary visual cortex layer 5	contra	V1L5	-0.5
Secondary visual cortex medial area rostral part	contra	V2Mr	1
Secondary visual cortex lateral area	contra	V2L	1
Mesencephalon	ipsi	MEC	-0.5
Peduncularpontine nucleus	ipsi	PPN	-0.5
Peduncularpontine nucleus caudal levels	ipsi	PPNCa	-0.5
Peduncularpontine nucleus rostral part	ipsi	PPNR	0.5
Substantia nigra A9	ipsi	SN	2
Substantia nigra compact part middle two thirds	ipsi	SNCmitt	4
Substantia nigra medial part	ipsi	SNM	2
Substantia nigra ventromedial part	ipsi	SNvm	-0.5
Ventral tegmental area A10 lateral part	ipsi	VTAL	2
Laterodorsal tegmental nucleus	ipsi	LDTg	-0.5
Pedunculopontine tegmental nucleus rostral part	ipsi	PPTgR	0.5
Anteroventral thalamic nucleus	ipsi	AV	2
Anteroventral thalamic nucleus parvicellular part rostrodorsal part	ipsi	AVpaRD	1
Interoanteromedial thalamic nucleus	ipsi	IAM	-3
Central medial thalamic nucleus	ipsi	CM	1
Central medial thalamic nucleus rostral part	ipsi	CMr	2
Centrolateral thalamic nucleus	ipsi	CL	2
Paracentral thalamic nucleus	ipsi	PC	1
Parafascicular thalamic nucleus	ipsi	PF	2
Parafascicular thalamic nucleus medial part	ipsi	PFM	1
Midline group of the dorsal thalamus	ipsi	MTN	2
Ventro anterior thalamic nucleus	ipsi	VA	1
Ventrolateral thalamic nucleus	ipsi	VL	1
Ventromedial thalamic nucleus	ipsi	VM	1
Intralaminar nuclei	ipsi	ILN	2
Intralaminar nuclei anterior part lateral part	ipsi	ILNAL	-0.5
Intralaminar nuclei anterior part medial part	ipsi	ILNAm	-0.5
Lateral posterior thalamic nucleus laterorostral part	ipsi	LPLR	1
Lateral posterior thalamic nucleus mediorostral part central and lateral region	ipsi	LPMRcel	2
Amygdaloid complex	ipsi	AC	-0.5
Basolateral amygdaloid nucleus	ipsi	BL	2
Anterior basolateral nucleus	ipsi	BLA	2
Basolateral amygdaloid nucleus ventrolateral part	ipsi	BLVL	0.5
Ventral basolateral nucleus	ipsi	BLV	-1
Basomedial amygdaloid nucleus	ipsi	BM	3
Lateral amygdaloid nucleus	ipsi	LA	3
Lateral nucleus medial part	ipsi	LAM	2
Central amygdaloid nucleus intermediate division	ipsi	CeI	2
Posterior amygdaloid nucleus	ipsi	COAp	-1
Nucleus of the lateral olfactory tract	ipsi	LOT	1.5
Nucleus of the lateral olfactory tract layer 2	ipsi	LOTL2	2
Nucleus of the lateral olfactory tract layer 3	ipsi	LOTL3	3
Periamygdaloid complex	ipsi	PAC	2
Periamygdaloid cortex layer 2	ipsi	PACL2	1.5
Amygdalohippocampal area	ipsi	AHi	2
Claustrum	ipsi	Cl	-0.5
Hippocampus	ipsi	HIPP	-0.5
Subiculum	ipsi	S	1
Rostral lateral entorhinal cortex layer 3	ipsi	EntRoL3	1
Lateral entorhinal cortex caudal layer 4	ipsi	LEntCL4	1
Lateral entorhinal cortex layer 3	ipsi	LEntL3	0.5
Medial entorhinal cortex layer 4	ipsi	MEntLyL4	1
Medial entorhinal cortex layer 6	ipsi	MEntLyL6	0.5
Piriform cortex	ipsi	Pir	0.5
Piriform area polymorph layer [Posterior piriform cortex]	ipsi	PPIRCPIR3	1
Retrosplenial agranular cortex	ipsi	RSA	2
Midrostrocaudal part of the retrosplenial dysgranular cortex	ipsi	RSdysmrc	-0.5
Anterior cingulate cortex	ipsi	ACC	2
Anterior cingulate cortex layer 3	ipsi	ACCL3	1
Anterior cingulate cortex layer 6	ipsi	ACCL6	1
Anterior cingulate cortex posterior part layer 5	ipsi	ACCpL5	2
Anterior cingulate cortex posterior part layer 6	ipsi	ACCpL6	2
Anterior cingulate cortex rostral part layer 5 a	ipsi	ACCrL5a	1
Cingulate cortex area 1	ipsi	Cg1	3
Cingulate cortex area 2	ipsi	Cg2	3
Dorsal anterior cingulate cortex	ipsi	DACC	2
Ventral anterior cingulate cortex layer 2	ipsi	VACCL2	2
Ventral anterior cingulate cortex layer 3	ipsi	VACCL3	2
Ventral anterior cingulate cortex layer 5	ipsi	VACCL5	2
Cingulate cortex layer 2	ipsi	CgL2	-0.5
Cingulate cortex layer 3	ipsi	CgL3	1
Cingulate cortex layer 5	ipsi	CgL5	-0.5
Cingulate cortex layer 5 b	ipsi	CgL5b	1
Cingulate cortex layer 6	ipsi	CgL6	1
Rostral part of the cingulate cortex	ipsi	RCg	2
Prelimbic cortex	ipsi	PrL	3
Prelimbic cortex layer 5 a	ipsi	PrLL5a	1
Prelimbic cortex rostral part	ipsi	PrLr	2
Frontal association cortex	ipsi	FrA	1
Frontal association cortex layer 5	ipsi	FrALL5	-0.5
Frontal cortex area 1	ipsi	Fr1	3
Frontal cortex area 1 layer 6	ipsi	Fr1L6	-0.5
Frontal cortex area 2	ipsi	Fr2	3
Frontal cortex area 2 layer 6	ipsi	Fr2L6	-0.5
Parietal association cortex layer 5	ipsi	ParPLa5	-0.5
Parietal association cortex layer 6	ipsi	ParPLa6	-0.5
Parietal cortex area 1	ipsi	Par1	2
Parietal cortex area 2	ipsi	Par2	2
Temporal association area 2 ventral part	ipsi	Te2V	-0.5
Auditory regions	ipsi	AU	-0.5
Primary auditory cortex	ipsi	Au1	1
Primary auditory cortex layer 3	ipsi	Au1L3	1
Primary auditory cortex layer 5	ipsi	Au1L5	3
Primary auditory cortex layer 5 b	ipsi	Au1L5b	1
Primary auditory cortex layer 6	ipsi	Au1L6	1
Secondary auditory cortex	ipsi	Au2	3
Secondary auditory cortex posterior part layer 5	ipsi	Au2pL5	3
Agranular insular cortex	ipsi	AI	2
Agranular insular cortex anterior part	ipsi	AIA	1
Agranular insular cortex dorsal part	ipsi	AID	0
Insular sulcal area	ipsi	InCA	2
Perirhinal cortex	ipsi	A35	2
Perirhinal cortex layer 5 a	ipsi	PRhL5a	1
Prefrontal cortex	ipsi	PFC	-0.5
Medial sulcal area	ipsi	MeSA	2
Medial sulcal area layer 5 a	ipsi	MeSAL5a	-0.5
Lateral prefrontal cortex	ipsi	lPFC	0
Lateral agranular prefrontal cortex	ipsi	AGl	2
Forelimb motor cortex	ipsi	FMCx	3
Hindlimb motor cortex	ipsi	HMCx	3
Lateral agranular prefrontal cortex posteromedial part	ipsi	AGlpm	2
Whiskers motor cortex	ipsi	WMCx	2
Medial prefrontal cortex	ipsi	mPFC	2
Medial agranular prefrontal cortex	ipsi	AGm	-0.5
Sensory regions	ipsi	SR	0.5
Primary somatosensory cortex hindlimb region	ipsi	S1HL	2
Visual regions	ipsi	VR	-0.5
Primary visual cortex	ipsi	V1	-0.5
Central primary visual area	ipsi	V1Ce	3
Primary visual cortex layer 3	ipsi	V1L3	1
Primary visual cortex layer 5	ipsi	V1L5	-0.5
Primary visual cortex layer 5 b	ipsi	V1L5b	1
Primary visual cortex layer 6	ipsi	V1L6	1
Secondary visual cortex medial area	ipsi	V2M	-0.5
Secondary visual cortex medial area rostral part	ipsi	V2Mr	3
Secondary visual cortex lateral area	ipsi	V2L	3
Orbitofrontal cortex	ipsi	OrFCx	1
Medial orbital cortex	ipsi	MO	2
Ventral orbital cortex	ipsi	VO	1

Key for weights

Value	Weight
-3	unknown
-2	fibers of passage
-1	not clear
-0.5	exists
0	not present
0.5	very light
1	light / sparse
1.5	light / moderate
2	moderate / dense
2.5	moderate / strong
3	strong
4	very strong