University of Rostock

Department of Anatomy

Neuroscience Group

  Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Medial agranular prefrontal cortex right


Abbreviation
AGm
Color       
Superior regionsMotoric regions

SynonymsAbbr.Language
 PrCm 
 Agm 
Whisker-related primary motor cortex  
 MOs 
Medial agranular cortex  
Precentral area  
Secondary motor area  
Area precentralis agranularisPRECag 
Agranular frontal cortex medial subdivision  
Secondary motor areasMOsEng
Precentral medial areaPreag 
Medial part of motor cortex Eng
Precentralis medialis cortex  
Precentralis agranular cortex  
Secondary somatomotor areaMOsEng
Medial agranular prefrontal cortexAGmEng
Secondary motor cortexM2Eng
Medial part of the frontal agranular cortexAGmEng
Secondary somatomotor areaMOsEng
Medial precentral nucleusPrCmEng
Medial agranular field of the motor cortex Eng

SubregionsSide
Medial agranular prefrontal cortex anterior partright
Medial agranular prefrontal cortex anteromedial partright
Medial agranular prefrontal cortex caudal partright
Medial agranular prefrontal cortex caudal to the anterior commissureright
Medial agranular prefrontal cortex dorsomedial partright
Medial agranular prefrontal cortex lateral partright
Medial agranular prefrontal cortex layersright
Medial agranular prefrontal cortex level of the anterior commissureright
Medial agranular prefrontal cortex medial partright
Medial agranular prefrontal cortex mid-rostrocaudal partright
Medial agranular prefrontal cortex rostral partright
Medial agranular prefrontal cortex rostrocaudal partright
Tail motoric cortexright
Medial agranular prefrontal cortex trunk zoneright
Posterior part of the medial agranular prefrontal cortexright
Medial agranular prefrontal cortex rostrolateral partright
Medial and anterior to the limb projection field in medial agranular prefrontal cortex right
Anterior lateral to the vibrissae representation in medial agranular prefrontal cortex right

Output to

NameSideAbbr.WeightDetails
Paraoculomotor nucleicontraOMC2
Periaqueductal graycontraPAG1
Superior colliculuscontraSC2
Superior colliculus intermediate and deep layerscontraSCidLa-0.5
Superior colliculus intermediate layerscontraSCi0.5
Ventral tegmental area A10contraVTA0.5
Laterodorsal tegmental nucleuscontraLDTg0
Pedunculopontine tegmental nucleus pars compactacontraPPNC1
Pedunculopontine tegmental nucleus pars dissipatacontraPPNd2
Lateral nuclear groups of the caudal ponscontraPcaL3
Dorsomedial tegmental areacontraDMTg-0.5
Magnocellular reticular nucleuscontraNRMC2
Medial reticular formationcontraRFm2
Nucleus reticularis ventralis pars alphacontraRVa3
Nucleus reticularis subcuneiformiscontraRScf1
Pontine reticular nucleuscontraPRN2
Pontine reticular nucleus oral part lateral partcontraPnOL3
Pontine reticular nucleus oral part medial partcontraPnOm3
Pontine reticular nucleus caudal partcontraPNC1.5
Pontine reticular nucleus caudal part alphacontraPnOca3
Pontine reticular nucleus caudal part betacontraPnOcb3
Dorsal portion of the pontine reticular nucleus caudal part betacontraPnOcbD1
Cuneiforme nucleuscontraCnF2
Bulbar reticular formation dorsomedial nucleicontraBRFdm-0.5
Gigantocellular reticular nucleuscontraGi2
Gigantocellular reticular nucleus medial partcontraGiM3
Subnucleus reticularis dorsaliscontraSRD2
Medial subnucleus reticularis ventraliscontraMSRV2
Medullary reticular nucleus dorsal partcontraMdDd3
Transition zone of the nucleus reticularis ventralis medullae oblongata and nucleus paragigantocellularis lateraliscontraTMdVLPG3
Subcoeruleus nucleuscontraSubC2
Facial nucleuscontra72
Perihypoglossal complexcontra12periC1.5
Intertrigeminal nucleuscontraI50.5
Mesencephalic trigeminal nucleus caudal polecontraMe5cp1
Spinal trigeminal nucleus caudal partcontraSp5C2
Peritrigeminal zonecontraP5-0.5
Nucleus of the solitary tractcontraSol2
Nucleus of the solitary tract dorsal partcontraSolD-0.5
Dorsal motor nucleus of vaguscontra10-0.5
Dorsal raphe nucleuscontraDR2
Dorsal raphe nucleus rostral partcontraDRr0
Ventral lateral medulla oblongatacontraMVL1
Caudal ventrolateral medulla lateral partcontraCVLMl2
Rostral ventrolateral medullacontraRVLM1.5
Cuneate nucleuscontraCu1
Deeper portion of middle part of cuneate nucleuscontraCudM1.5
Deep portion of the middle gracile nucleuscontraGrdm1.5
Paragigantocellular reticular nucleuscontraPGi3
Dorsal paragigantocellular nucleuscontraDPGi3
Endopiriform systemcontraEnN2
HypothalamuscontraHYPO0
Lateral hypothalamic areacontraLH2.5
Anterolateral regioncontraMMna3
ThalamuscontraT2
Anteromedial thalamic nucleuscontraAM2
Central medial thalamic nucleuscontraCM2
Rhomboid thalamic nucleuscontraRh2
Mediodorsal thalamic nucleuscontraMD3
Mediodorsal thalamic nucleus central partcontraMDC1
Mediodorsal thalamic nucleus lateral partcontraMDL1
Mediodorsal thalamic nucleus medial partcontraMDM1
Reuniens thalamic nucleuscontraRe2
Ventro anterior thalamic nucleuscontraVA0.5
Ventro anterior thalamic nucleus medial partcontraVAm1
Ventrolateral thalamic nucleuscontraVL1
Ventrolateral thalamic nucleus medial partcontraVLme1
Ventromedial thalamic nucleuscontraVM2
Intralaminar nucleicontraILN1
Zona incertacontraZI0
Basal magnocellular nucleus rostrodorsal partcontraBmcRD1
Basolateral amygdaloid nucleuscontraBL-1
Lateral amygdaloid nucleuscontraLA1.5
Central amygdaloid nucleus lateral division capsular partcontraCeC1
ClaustrumcontraCl3
StriatumcontraSTR2.5
Caudate putamencontraCPu1
Dorsocentral striatumcontraDCS1
Dorsolateral striatum dorsal partcontraCPudlD0.5
Far dorsolateral striatumcontraFDLS3
Piriform cortexcontraPir-0.5
Anterior cingulate cortexcontraACC1
Prelimbic cortexcontraPrL1
NeocortexcontraNEOCX3
Agranular insular cortexcontraAI-0.5
Agranular insular cortex posterior partcontraAIP-0.5
Agranular insular cortex ventral part layer 3contraAIVL32
Granular insular cortex caudal partcontraGIC0
Perirhinal cortexcontraA353
Lateral agranular prefrontal cortexcontraAGl2.5
Medial prefrontal cortexcontramPFC0.5
Medial agranular prefrontal cortexcontraAGm2
Primary somatosensory cortexcontraS11
Primary somatosensory cortex barrel fieldcontraS1BF1
Primary somatosensory cortex forelimb regioncontraS1FL1
Medial orbital cortexcontraMO-0.5
Neocortex superficial layerscontraNEOCXsL2
Neocortex layer 5contraNEOCXL52
Neocortex layer 6contraNEOCXL62
Cervical segmentscontraCSeg-0.5
Cervical segment 1contraCS1-0.5
Spinal cord layer 3 C1contraSCL3C1-0.5
Cervical segment 2contraCS2-0.5
Spinal cord layer 3 C2contraSCL3C2-0.5
Cervical segment 3contraCS3-0.5
Spinal cord layer 3 C3contraSCL3C3-0.5
Cervical segment 4contraCS4-0.5
Spinal cord layer 3 C4contraSCL3C4-0.5
Cervical segment 5contraCS5-0.5
Spinal cord layer 3 C5contraSCL3C5-0.5
Cervical segment 6contraCS6-0.5
Spinal cord layer 3 C6contraSCL3C6-0.5
Cervical segment 7contraCS7-0.5
Spinal cord layer 3 C7contraSCL3C7-0.5
Cervical segment 8contraCS8-0.5
Spinal cord layer 3 C8contraSCL3C8-0.5
Thoracal segmentscontraTSeg-1
Thoracal segment 1contraT1-0.5
Intermediolateral cell column T1contraIMLT13
Spinal cord layer 3 T1contraSCL3T1-0.5
Thoracal segment 2contraT2-0.5
Intermediolateral cell column T2contraIMLT23
Spinal cord layer 3 T2contraSCL3T2-0.5
Thoracal segment 3contraT3-0.5
Intermediolateral cell column T3contraIMLT33
Spinal cord layer 3 T3contraSCL3T3-0.5
Thoracal segment 4contraT4-0.5
Intermediolateral cell column T4contraIMLT43
Thoracal segment 5contraT5-0.5
Thoracal segment 6contraT6-0.5
Thoracal segment 7contraT7-0.5
Thoracal segment 8contraT8-0.5
Thoracal segment 9contraT9-0.5
Thoracal segment 10contraT10-0.5
Thoracal segment 11contraT11-0.5
Thoracal segment 12contraT12-0.5
Thoracal segment 13contraT13-0.5
Lumbar segment 1contraL1-0.5
Spinal cord layers L1contraSCLL11
Spinal cord layer 5 L1contraSCL5L12
Spinal cord layer 6 L1contraSCL6L12
Spinal cord layer 3 L1contraSCL3L13
Spinal cord layer 4 L1contraSCL4L13
Spinal cord layer 1 L1contraSCL1L12
Spinal cord layer 2 L1contraSCL2L12
Ventral horn L1contraVHL10.5
Spinal cord layer 7 L1contraSCL7L11
Lumbar segment 2contraL2-0.5
Spinal cord layers L2contraSCLL21
Spinal cord layer 5 L2contraSCL5L22
Spinal cord layer 6 L2contraSCL6L22
Spinal cord layer 3 L2contraSCL3L23
Spinal cord layer 4 L2contraSCL4L23
Spinal cord layer 1 L2contraSCL1L22
Spinal cord layer 2 L2contraSCL2L22
Ventral horn L2contraVHL20.5
Spinal cord layer 7 L2contraSCL7L21
Lumbar segment 3contraL3-0.5
Spinal cord layers L3contraSCLL31
Spinal cord layer 5 L3contraSCL5L32
Spinal cord layer 6 L3contraSCL6L32
Spinal cord layer 3 L3contraSCL3L33
Spinal cord layer 4 L3contraSCL4L33
Spinal cord layer 1 L3contraSCL1L32
Spinal cord layer 2 L3contraSCL2L32
Ventral horn L3contraVHL30.5
Spinal cord layer 7 L3contraSCL7L31
Lumbar segment 4contraL4-0.5
Spinal cord layers L4contraSCLL41
Spinal cord layer 5 L4contraSCL5L42
Spinal cord layer 6 L4contraSCL6L42
Spinal cord layer 3 L4contraSCL3L43
Spinal cord layer 4 L4contraSCL4L43
Spinal cord layer 1 L4contraSCL1L42
Spinal cord layer 2 L4contraSCL2L42
Ventral horn L4contraVHL40.5
Spinal cord layer 7 L4contraSCL7L41
Lumbar segment 5contraL5-0.5
Spinal cord layers L5contraSCLL51
Spinal cord layer 5 L5contraSCL5L52
Spinal cord layer 6 L5contraSCL6L52
Spinal cord layer 3 L5contraSCL3L53
Spinal cord layer 4 L5contraSCL4L53
Spinal cord layer 1 L5contraSCL1L52
Spinal cord layer 2 L5contraSCL2L52
Ventral horn L5contraVHL50.5
Spinal cord layer 7 L5contraSCL7L51
Lumbar segment 6contraL6-0.5
Spinal cord layers L6contraSCLL61
Spinal cord layer 5 L6contraSCL5L62
Spinal cord layer 6 L6contraSCL6L62
Spinal cord layer 3 L6contraSCL3L63
Spinal cord layer 4 L6contraSCL4L63
Spinal cord layer 1 L6contraSCL1L62
Spinal cord layer 2 L6contraSCL2L62
Ventral horn L6contraVHL60.5
Spinal cord layer 7 L6contraSCL7L61
Sacral segment 1contraSa1-0.5
Sacral segment 2contraSa2-0.5
Sacral segment 3contraSa3-0.5
Sacral segment 4contraSa4-0.5
Interstitial nucleus of medial longitudinal fasciculusipsiIMLF1
Nucleus of DarkschewitschipsiDk2
Oculomotor nucleusipsi32
Paraoculomotor nucleiipsiOMC3
Medial accessory oculomotor nucleusipsiMA33
Rostral interstitial nucleus of medial longitudinal fasciculusipsiRI3
Periaqueductal grayipsiPAG2
Periaqueductal gray rostrolateral partipsiPAGRL3
Ventrolateral periaqueductal grayipsiVLPAG0
Periventricular gray matteripsiPVG1.5
Medial pontine nucleusipsiMPoN2
Red nucleusipsiR2
Prerubral fieldipsiPR-0.5
Red nucleus parvicellular partipsiROC1
TectumipsiTEC1
Superior colliculusipsiSC3
Superior colliculus intermediate layersipsiSCi3
Superior colliculus deep layersipsiSCd1
Substantia nigra compact partipsiSNC0
Substantia nigra reticular partipsiSNR2
Ventral tegmental area A10ipsiVTA2
Middle part of the retrorubral fieldipsiRRmi0
Laterodorsal tegmental nucleusipsiLDTg0
Pedunculopontine tegmental nucleus pars compactaipsiPPNC3
Pedunculopontine tegmental nucleus pars dissipataipsiPPNd3
Edinger Westphal nucleusipsiEW1
Interstitial nucleus of CajalipsiInC-0.5
Paravermal area lobule 8ipsiCERCPAL8-10
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC2
Nucleus incertus pars dissipataipsiNId3
Pons caudal partipsiPca2
Lateral nuclear groups of the caudal ponsipsiPcaL3
Pontine grayipsiPG2
Dorsomedial tegmental areaipsiDMTg1
Reticulotegmental nucleus of the pons medial partipsiRtTgm3
Pontine nucleus medial partipsiBPNm1
Prepositus nucleusipsiPr1.5
Intermediate reticular nucleusipsiIRt1
Magnocellular reticular nucleusipsiNRMC2
Magnocellular reticular nucleus beta partipsiNRMCb2
Medial reticular formationipsiRFm3
Nucleus reticularis ventralis pars alphaipsiRVa3
Deep mesencephalic nucleusipsiDpMe2
Nucleus reticularis subcuneiformisipsiRScf3
Pontine reticular nucleusipsiPRN2
Pontine reticular nucleus oral part lateral partipsiPnOL3
Pontine reticular nucleus oral part medial partipsiPnOm3
Pontine reticular nucleus caudal partipsiPNC4
Pontine reticular nucleus caudal part alphaipsiPnOca3
Pontine reticular nucleus caudal part betaipsiPnOcb3
Dorsal portion of the pontine reticular nucleus caudal part betaipsiPnOcbD2
Peribrachial regionipsiPBR3
Cuneiforme nucleusipsiCnF3
Bulbar reticular formation dorsomedial nucleiipsiBRFdm-0.5
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus medial partipsiGiM3
Lateral reticular nucleus parvicellular partipsiLRtPC-0.5
Subnucleus reticularis dorsalisipsiSRD2
Medullary reticular nucleus dorsal partipsiMdDd1
Transition zone of the nucleus reticularis ventralis medullae oblongata and nucleus paragigantocellularis lateralisipsiTMdVLPG2
Parvicellular reticular nucleusipsiPCRt1
Subcoeruleus nucleusipsiSubC3
Perihypoglossal complexipsi12periC2
Intertrigeminal nucleusipsiI51
Mesencephalic trigeminal nucleus caudal poleipsiMe5cp3
Peritrigeminal zoneipsiP5-0.5
Nucleus of the solitary tractipsiSol0
Nucleus of the solitary tract dorsal partipsiSolD3
Dorsal motor nucleus of vagusipsi101
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal partipsiDRC0
Dorsal raphe nucleus midrostrocaudal partipsiDRmrc1
Superior central raphe nucleusipsiCS2
B9 serotonin cellsipsiB91
Ventral lateral medulla oblongataipsiMVL0.5
Caudal ventrolateral medulla lateral partipsiCVLMl2
Rostral ventrolateral medullaipsiRVLM2
Deeper portion of middle part of cuneate nucleusipsiCudM0.5
Deep portion of the middle gracile nucleusipsiGrdm0.5
Inferior olive medial nucleusipsiIOM2
Inferior olive principal nucleusipsiIOPr2
Paragigantocellular reticular nucleusipsiPGi3
Dorsal paragigantocellular nucleusipsiDPGi3
Basal forebrainipsiBAF4
Endopiriform systemipsiEnN2
Dorsal endopiriform nucleusipsiDEn0
Ventral endopiriform nucleusipsiVEn0
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Basal nucleus MeynertipsiB1
Medial preoptic areaipsiMPA-0.5
Dorsal tenia tectaipsiDTT0
Ventral tenia tectaipsiVTT0
HypothalamusipsiHYPO0
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0.5
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic areaipsiLH2.5
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0.5
Anterolateral regionipsiMMna2
A8 dopamine cells retrorubral group lateral partipsiRRFL2
A8 dopamine cells retrorubral group medial partipsiRRFm0
ThalamusipsiT4
Anterodorsal thalamic nucleusipsiAD0
Anteromedial thalamic nucleusipsiAM2
Anteroventral thalamic nucleusipsiAV0
Interoanterodorsal thalamic nucleusipsiIAD1
Interoanteromedial thalamic nucleusipsiIAM2
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL3
Paracentral thalamic nucleusipsiPC2
Parafascicular thalamic nucleusipsiPF2
Rhomboid thalamic nucleusipsiRh2
Posterior thalamic nuclear groupipsiPo2
Posterior thalamic nuclear group triangular partipsiPoT2
Mediodorsal thalamic nucleusipsiMD3
Intermediodorsal thalamic nucleusipsiIMD1.5
Mediodorsal thalamic nucleus central partipsiMDC3
Mediodorsal thalamic nucleus lateral partipsiMDL3
Mediodorsal thalamic nucleus medial partipsiMDM3
Mediodorsal thalamic nucleus paralemellar divisionipsiMDpL-0.5
Paratenial thalamic nucleusipsiPT1
Paraventricular thalamic nucleusipsiPV2
Paraventricular thalamic nucleus caudal partipsiPVca2
Paraventricular thalamic nucleus rostral partipsiPVr1
Reuniens thalamic nucleusipsiRe3
Reuniens thalamic nucleus caudomedial divisionipsiRecm3
Reunienes thalamic nucleus rostromedial divisionipsiRerm2
Reuniens thalamic nucleus rostrolateral divisionipsiRerl2
Ventral anterior-lateral complex of the thalamusipsiVAL3
Ventro anterior thalamic nucleusipsiVA3
Ventro anterior thalamic nucleus medial partipsiVAm2
Ventrolateral thalamic nucleusipsiVL3
Ventrolateral thalamic nucleus medial partipsiVLme2
Ventral posterolateral thalamic nucleusipsiVPL0
Ventral posteromedial thalamic nucleusipsiVPM0
Ventromedial thalamic nucleusipsiVM3
Intralaminar nucleiipsiILN3
Lateral posterior thalamic nucleusipsiLP1
Lateral posterior thalamic nucleus mediorostral part medial regionipsiLPMRm2
Laterodorsal thalamic nucleusipsiLD2
Reticular thalamic nucleusipsiRt0
Zona incertaipsiZI3
Nucleus of the fields of ForelipsiF2
Zona incerta dorsal partipsiZID-0.5
Zona incerta dorsolateral partipsiZIDL1
Zona incerta ventral partipsiZIV-0.5
Zona incerta ventral part medial partipsiZIvm3
Lateral habenular nucleusipsiLHb0
Medial habenular nucleusipsiMHb0
Pretectal regionipsiPRT1
Anterior pretectal nucleusipsiAPT1
Medial half of the pyramideipsipyraMh-2
Basal magnocellular nucleus rostrodorsal partipsiBmcRD-1
Basolateral amygdaloid nucleusipsiBL1
Anterior basolateral nucleusipsiBLA2.5
Posterior basolateral nucleusipsiBLP2
Anterior basomedial nucleusipsiBMA0
Posterior basomedial nucleusipsiBMP0
Lateral amygdaloid nucleusipsiLA2
Bed nucleus of the stria terminalis anterior lateral areaipsiBSTAL1.5
Bed nucleus of the stria terminalis dorsolateral partipsiBSTDL0
Bed nucleus of the stria terminalis medial divisionipsiBSTM0
Central amygdaloid nucleus lateral divisionipsiCeL2
Central amygdaloid nucleus lateral division capsular partipsiCeC-1
Central amygdaloid nucleus medial divisionipsiCeM1.5
Amygdalopiriform transition areaipsiAPir0
Anterior cortical amygdaloid nucleusipsiACo0
Posterior amygdaloid nucleusipsiCOAp0
Posterolateral cortical nucleusipsiPLCo0
Nucleus of the lateral olfactory tractipsiLOT0
Posteromedial cortical nucleusipsiPMCo0
ClaustrumipsiCl2
Anterior part of the claustrumipsiACl3
Ventral pallidumipsiVP1
StriatumipsiSTR2.5
Accumbens nucleus coreipsiAcbC1
Midrostrocaudal level of the accumbens nucleus shellipsiAcbShmrc0.5
Caudate putamenipsiCPu4
Dorsomedial striatumipsiCPudm-0.5
Medial striatumipsiCPum2
Caudal striatumipsiCPuc1
Dorsal striatumipsiCPud3
Dorsocentral striatumipsiDCS3
Dorsolateral striatumipsiCPudl2
Dorsolateral striatum dorsal partipsiCPudlD1
Far dorsolateral striatumipsiFDLS3
Rostroventral striatumipsiCPurv-0.5
Ventral striatumipsiCPuv0
Ventromedial striatum rostral partipsiCPuvmr3
Lateral striatumipsiCPul3
Fundus of the striatumipsiFS2
Subthalamic nucleusipsiSTh3
Medial part of caudal subthalamic nucleusipsiSThmc0
Subthalamic nucleus dorsomedial partipsiSThdm3
Subthalamic nucleus lateral partipsiSThl0
Dentate gyrusipsiDG0
Field CA1 of hippocampus dorsalipsiCA1d0
Field CA1 of hippocampus ventral partipsiCA1v0
Field CA2 of hippocampusipsiCA20
Field CA3 of hippocampusipsiCA30
Subiculum dorsal partipsiSd0
Subiculum ventral partipsiSv0
Indusium griseumipsiIG1
PresubiculumipsiPrS2.5
ParasubiculumipsiPaS0
PostsubiculumipsiPost2
Lateral entorhinal cortexipsiLEnt2.5
Medial entorhinal cortexipsiMEnt3
Medial entorhinal cortex dorsal partipsiMEntD0
Piriform cortexipsiPir1
Postpiriform transition areaipsiTR0
Retrosplenial regionsipsiRS-1
Retrosplenial dorsalipsiRSd2
Retrosplenial ventral partipsiRSPv2
Retrosplenial ventral aipsiRSv-a1.5
Retrosplenial area ventral part zone b/cipsiRSPv-bc0.5
Retrosplenial cortex middle part layer 1ipsiRSmiL1-0.5
Retrosplenial cortex middle part layer 2ipsiRSmiL2-0.5
Retrosplenial cortex middle part layer 3ipsiRSmiL3-0.5
Retrosplenial cortex middle part layer 4ipsiRSmiL4-0.5
Retrosplenial cortex middle part layer 5ipsiRSmiL5-0.5
Retrosplenial cortex middle part layer 6ipsiRSmiL6-0.5
Retrosplenial agranular cortexipsiRSA1.5
Caudal part of the retrosplenial dysgranular cortexipsiRSdysC-1
Retrosplenial dysgranular cortex rostral partipsiRSdysRo-0.5
Area 29aipsiA29a1
Area 29b rostral partipsiA29bR0.5
Area 29d rostral two-thirdipsiA29dRtt-0.5
Retrosplenial granular cortex c regionipsiRSGc-0.5
Rostral area 29c middorsoventral partipsiRSGcrmddv3
Rostral two-third of area 29cipsiRSGcrtt-0.5
Anterior cingulate cortexipsiACC1
Cingulate cortex area 1 caudal partipsiCg1c1
Cingulate cortex area 1 layer 3ipsiCg1L33
Cingulate cortex area 2 caudal partipsiCg2c1
Dorsal anterior cingulate cortexipsiDACC3
Ventral anterior cingulate cortexipsiVACC2
Prelimbic cortexipsiPrL2.5
Prelimbic cortex layer 2ipsiPrLL22
Prelimbic cortex layer 3ipsiPrLL32
Prelimbic cortex layer 5ipsiPrLL52
Prelimbic cortex layer 6ipsiPrLL62
Infralimbic cortexipsiIL2
Parietal association cortexipsiPtA1
Parietal cortex posterior areaipsiParP3
Parietal cortex posterior area layersipsiParPLa3
Parietal cortex posterior area layer 1ipsiParPL13
Parietal cortex posterior area layer 6ipsiParPL63
Parietal cortex posterior area medial portionipsimPPC3
Parietal cortex posterior area dorsal partipsiParPD2
Temporal cortexipsiTE1.5
Auditory regionsipsiAU0
Primary auditory cortexipsiAu10
Ventral auditory areasipsiAUDv0
Insular cortexipsiICX0
Agranular insular cortexipsiAI-0.5
Agranular insular cortex dorsal partipsiAID2
Agranular insular cortex posterior partipsiAIP3
Agranular insular cortex ventral partipsiAIV2
Agranular insular cortex ventral part layer 3ipsiAIVL32
Dysgranular insular cortexipsiDI1
Gustatory dysgranular insular cortexipsiDIg2
Granular insular cortexipsiGI1.5
Granular insular cortex caudal partipsiGIC3
Perirhinal cortexipsiA353
Ectorhinal cortexipsiA363
Ectorhinal cortex caudal partipsiEctC2
Ectorhinal cortex rostral partipsiEctR3
Postrhinal cortexipsiPOR1
Prefrontal cortexipsiPFC-0.5
Motoric regionsipsiM1.5
Lateral agranular prefrontal cortexipsiAGl4
Caudal forelimb motor areaipsiCFMA2
Rostral forelimb motor areaipsiRFMA2
Lateral agranular prefrontal cortex layer 1aipsiAGlL1a-0.5
Medial prefrontal cortexipsimPFC1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS12.5
Primary somatosensory cortex barrel fieldipsiS1BF3
Posteromedial barrel subfieldipsiPMBSF-0.5
Primary somatosensory cortex lower lip regionipsiS1LL-0.5
Primary somatosensory cortex upper lip regionipsiS1ULp-0.5
Primary somatosensory cortex forelimb regionipsiS1FL3
Primary somatosensory cortex forelimb region forepawipsiS1FP-0.5
Primary somatosensory cortex proximal forelimb regionipsiS1FLP-0.5
Primary somatosensory cortex foot regionipsiS1HPfr-0.5
Primary somatosensory cortex hindlimb leg regionipsiS1HLLe-0.5
Primary somatosensory cortex hindlimb toe regionipsiS1HLT-0.5
Primary somatosensory cortex trunk regionipsiS1Tr-0.5
Secondary somatosensory cortexipsiS22.5
Posterior prefrontal cortexipsiPoPFC-0.5
Primary visual cortexipsiV12
Posterior half of the primary visual cortexipsiV1ph0
Secondary visual cortex medial areaipsiV2M0
Secondary visual cortex lateral areaipsiV2L0
Primary visual cortex binocular areaipsiV1B2
Intermediolateral cortical visual areaipsiVISli0
Laterolateral cortical visual areaipsiVISll1.5
Mediolateral cortical visual areaipsiVISlm1.5
Posterolateral cortical visual areaipsiVISpl0
Rostrolateral cortical visual areaipsiVISrl0
Anteromedial cortical visual areaipsiVISam2
Dorsolateral orbital cortexipsiDLO-0.5
Lateral orbital cortexipsiLO1.5
Medial orbital cortexipsiMO-0.5
Ventral orbital cortexipsiVO1.5
Ventrolateral orbital areaipsiVLO3
Nucleus of the posterior commissureipsiPCom-0.5
Precommissural nucleusipsiPrC3
Lateral geniculate complexipsiLG0
Medial geniculate nucleusipsiMG0
Accessory olfactory bulbipsiAOB0
Olfactory bulb A16ipsiMOB0
Anterior olfactory nucleusipsiAON0
Olfactory tubercleipsiTuO2
Pyramidal decussationipsipyx1
Area X C1ipsiSCL10C11
Spinal cord layer 5 C1ipsiSCL5C11
Spinal cord layer 6 C1ipsiSCL6C11
Spinal cord layer 3 C1ipsiSCL3C13
Spinal cord layer 4 C1ipsiSCL4C13
Spinal cord layer 1 C1ipsiSCL1C13
Spinal cord layer 2 C1ipsiSCL2C13
Spinal cord layer 7 C1ipsiSCL7C11
Spinal cord layer 8 C1ipsiSCL8C11
Spinal cord layer 9 C1ipsiSCL9C11
Area X C2ipsiSCL10C21
Spinal cord layer 5 C2ipsiSCL5C21
Spinal cord layer 6 C2ipsiSCL6C21
Spinal cord layer 3 C2ipsiSCL3C23
Spinal cord layer 4 C2ipsiSCL4C23
Spinal cord layer 1 C2ipsiSCL1C23
Spinal cord layer 2 C2ipsiSCL2C23
Spinal cord layer 7 C2ipsiSCL7C21
Spinal cord layer 8 C2ipsiSCL8C21
Spinal cord layer 9 C2ipsiSCL9C21
Area X C3ipsiSCL10C31
Spinal cord layer 5 C3ipsiSCL5C31
Spinal cord layer 6 C3ipsiSCL6C31
Spinal cord layer 3 C3ipsiSCL3C33
Spinal cord layer 4 C3ipsiSCL4C33
Spinal cord layer 1 C3ipsiSCL1C33
Spinal cord layer 2 C3ipsiSCL2C33
Spinal cord layer 7 C3ipsiSCL7C31
Spinal cord layer 8 C3ipsiSCL8C31
Spinal cord layer 9 C3ipsiSCL9C31
Area X C4ipsiSCL10C41
Spinal cord layer 5 C4ipsiSCL5C41
Spinal cord layer 6 C4ipsiSCL6C41
Spinal cord layer 3 C4ipsiSCL3C43
Spinal cord layer 4 C4ipsiSCL4C43
Spinal cord layer 1 C4ipsiSCL1C43
Spinal cord layer 2 C4ipsiSCL2C43
Spinal cord layer 7 C4ipsiSCL7C41
Spinal cord layer 8 C4ipsiSCL8C41
Spinal cord layer 9 C4ipsiSCL9C41
Area X C5ipsiSCL10C51
Spinal cord layer 5 C5ipsiSCL5C51
Spinal cord layer 6 C5ipsiSCL6C51
Spinal cord layer 3 C5ipsiSCL3C53
Spinal cord layer 4 C5ipsiSCL4C53
Spinal cord layer 1 C5ipsiSCL1C53
Spinal cord layer 2 C5ipsiSCL2C53
Spinal cord layer 7 C5ipsiSCL7C51
Spinal cord layer 8 C5ipsiSCL8C51
Spinal cord layer 9 C5ipsiSCL9C51
Area X C6ipsiSCL10C61
Spinal cord layer 5 C6ipsiSCL5C61
Spinal cord layer 6 C6ipsiSCL6C61
Spinal cord layer 3 C6ipsiSCL3C63
Spinal cord layer 4 C6ipsiSCL4C63
Spinal cord layer 1 C6ipsiSCL1C63
Spinal cord layer 2 C6ipsiSCL2C63
Spinal cord layer 7 C6ipsiSCL7C61
Spinal cord layer 8 C6ipsiSCL8C61
Spinal cord layer 9 C6ipsiSCL9C61
Cervical segment 7ipsiCS7-1
Area X C7ipsiSCL10C71
Spinal cord layer 5 C7ipsiSCL5C71
Spinal cord layer 6 C7ipsiSCL6C71
Spinal cord layer 3 C7ipsiSCL3C73
Spinal cord layer 4 C7ipsiSCL4C73
Spinal cord layer 1 C7ipsiSCL1C73
Spinal cord layer 2 C7ipsiSCL2C73
Spinal cord layer 7 C7ipsiSCL7C71
Spinal cord layer 8 C7ipsiSCL8C71
Spinal cord layer 9 C7ipsiSCL9C71
Area X C8ipsiSCL10C81
Spinal cord layer 5 C8ipsiSCL5C81
Spinal cord layer 6 C8ipsiSCL6C81
Spinal cord layer 3 C8ipsiSCL3C83
Spinal cord layer 4 C8ipsiSCL4C83
Spinal cord layer 1 C8ipsiSCL1C83
Spinal cord layer 2 C8ipsiSCL2C83
Spinal cord layer 7 C8ipsiSCL7C81
Spinal cord layer 8 C8ipsiSCL8C81
Spinal cord layer 9 C8ipsiSCL9C81
Thoracal segmentsipsiTSeg-1
Intermediolateral cell column T1ipsiIMLT10.5
Area X T1ipsiSCL10T11
Spinal cord layer 5 T1ipsiSCL5T11
Spinal cord layer 6 T1ipsiSCL6T11
Spinal cord layer 3 T1ipsiSCL3T13
Spinal cord layer 4 T1ipsiSCL4T13
Spinal cord layer 1 T1ipsiSCL1T13
Spinal cord layer 2 T1ipsiSCL2T13
Spinal cord layer 7 T1ipsiSCL7T11
Spinal cord layer 8 T1ipsiSCL8T11
Spinal cord layer 9 T1ipsiSCL9T11
Intermediolateral cell column T2ipsiIMLT20.5
Area X T2ipsiSCL10T21
Spinal cord layer 5 T2ipsiSCL5T21
Spinal cord layer 6 T2ipsiSCL6T21
Spinal cord layer 3 T2ipsiSCL3T23
Spinal cord layer 4 T2ipsiSCL4T23
Spinal cord layer 1 T2ipsiSCL1T23
Spinal cord layer 2 T2ipsiSCL2T23
Spinal cord layer 7 T2ipsiSCL7T21
Spinal cord layer 8 T2ipsiSCL8T21
Spinal cord layer 9 T2ipsiSCL9T21
Intermediolateral cell column T3ipsiIMLT30.5
Area X T3ipsiSCL10T31
Spinal cord layer 5 T3ipsiSCL5T31
Spinal cord layer 6 T3ipsiSCL6T31
Spinal cord layer 3 T3ipsiSCL3T33
Spinal cord layer 4 T3ipsiSCL4T33
Spinal cord layer 1 T3ipsiSCL1T33
Spinal cord layer 2 T3ipsiSCL2T33
Spinal cord layer 7 T3ipsiSCL7T31
Spinal cord layer 8 T3ipsiSCL8T31
Spinal cord layer 9 T3ipsiSCL9T31
Intermediolateral cell column T4ipsiIMLT40.5
Area X T4ipsiSCL10T41
Spinal cord layer 5 T4ipsiSCL5T41
Spinal cord layer 6 T4ipsiSCL6T41
Spinal cord layer 3 T4ipsiSCL3T43
Spinal cord layer 4 T4ipsiSCL4T43
Spinal cord layer 1 T4ipsiSCL1T43
Spinal cord layer 2 T4ipsiSCL2T43
Spinal cord layer 7 T4ipsiSCL7T41
Spinal cord layer 8 T4ipsiSCL8T41
Spinal cord layer 9 T4ipsiSCL9T41
Area X T5ipsiSCL10T51
Spinal cord layer 5 T5ipsiSCL5T51
Spinal cord layer 6 T5ipsiSCL6T51
Spinal cord layer 3 T5ipsiSCL3T53
Spinal cord layer 4 T5ipsiSCL4T53
Spinal cord layer 1 T5ipsiSCL1T53
Spinal cord layer 2 T5ipsiSCL2T53
Spinal cord layer 7 T5ipsiSCL7T51
Spinal cord layer 8 T5ipsiSCL8T51
Spinal cord layer 9 T5ipsiSCL9T51
Area X T6ipsiSCL10T61
Spinal cord layer 5 T6ipsiSCL5T61
Spinal cord layer 6 T6ipsiSCL6T61
Spinal cord layer 3 T6ipsiSCL3T63
Spinal cord layer 4 T6ipsiSCL4T63
Spinal cord layer 1 T6ipsiSCL1T63
Spinal cord layer 2 T6ipsiSCL2T63
Spinal cord layer 7 T6ipsiSCL7T61
Spinal cord layer 8 T6ipsiSCL8T61
Spinal cord layer 9 T6ipsiSCL9T61
Area X T7ipsiSCL10T71
Spinal cord layer 5 T7ipsiSCL5T71
Spinal cord layer 6 T7ipsiSCL6T71
Spinal cord layer 3 T7ipsiSCL3T73
Spinal cord layer 1 T7ipsiSCL1T73
Spinal cord layer 4 T7ipsiSCL4T73
Spinal cord layer 2 T7ipsiSCL2T73
Spinal cord layer 7 T7ipsiSCL7T71
Spinal cord layer 8 T7ipsiSCL8T71
Spinal cord layer 9 T7ipsiSCL9T71
Area X T8ipsiSCL10T81
Spinal cord layer 5 T8ipsiSCL5T81
Spinal cord layer 6 T8ipsiSCL6T81
Spinal cord layer 3 T8ipsiSCL3T83
Spinal cord layer 4 T8ipsiSCL4T83
Spinal cord layer 1 T8ipsiSCL1T83
Spinal cord layer 2 T8ipsiSCL2T83
Spinal cord layer 7 T8ipsiSCL7T81
Spinal cord layer 8 T8ipsiSCL8T81
Spinal cord layer 9 T8ipsiSCL9T81
Area X T9ipsiSCL10T91
Spinal cord layer 5 T9ipsiSCL5T91
Spinal cord layer 6 T9ipsiSCL6T91
Spinal cord layer 3 T9ipsiSCL3T93
Spinal cord layer 4 T9ipsiSCL4T93
Spinal cord layer 1 T9ipsiSCL1T93
Spinal cord layer 2 T9ipsiSCL2T93
Spinal cord layer 7 T9ipsiSCL7T91
Spinal cord layer 8 T9ipsiSCL8T91
Spinal cord layer 9 T9ipsiSCL9T91
Area X T10ipsiSCL10T101
Spinal cord layer 5 T10ipsiSCL5T101
Spinal cord layer 6 T10ipsiSCL6T101
Spinal cord layer 3 T10ipsiSCL3T103
Spinal cord layer 4 T10ipsiSCL4T103
Spinal cord layer 1 T10ipsiSCL1T103
Spinal cord layer 2 T10ipsiSCL2T103
Spinal cord layer 7 T10ipsiSCL7T101
Spinal cord layer 8 T10ipsiSCL8T101
Spinal cord layer 9 T10ipsiSCL9T101
Area X T11ipsiSCL10T111
Spinal cord layer 5 T11ipsiSCL5T111
Spinal cord layer 6 T11ipsiSCL6T111
Spinal cord layer 3 T11ipsiSCL3T113
Spinal cord layer 4 T11ipsiSCL4T113
Spinal cord layer 1 T11ipsiSCL1T113
Spinal cord layer 2 T11ipsiSCL2T113
Spinal cord layer 7 T11ipsiSCL7T111
Spinal cord layer 8 T11ipsiSCL8T111
Spinal cord layer 9 T11ipsiSCL9T111
Area X T12ipsiSCL10T121
Spinal cord layer 5 T12ipsiSCL5T121
Spinal cord layer 6 T12ipsiSCL6T121
Spinal cord layer 3 T12ipsiSCL3T123
Spinal cord layer 4 T12ipsiSCL4T123
Spinal cord layer 1 T12ipsiSCL1T123
Spinal cord layer 2 T12ipsiSCL2T123
Spinal cord layer 7 T12ipsiSCL7T121
Spinal cord layer 8 T12ipsiSCL8T121
Spinal cord layer 9 T12ipsiSCL9T121
Area X T13ipsiSCL10T131
Spinal cord layer 5 T13ipsiSCL5T131
Spinal cord layer 6 T13ipsiSCL6T131
Spinal cord layer 3 T13ipsiSCL3T133
Spinal cord layer 4 T13ipsiSCL4T133
Spinal cord layer 1 T13ipsiSCL1T133
Spinal cord layer 2 T13ipsiSCL2T133
Spinal cord layer 7 T13ipsiSCL7T131
Spinal cord layer 8 T13ipsiSCL8T131
Spinal cord layer 9 T13ipsiSCL9T131
Area X L1ipsiSCL10L11
Spinal cord layer 5 L1ipsiSCL5L11
Spinal cord layer 6 L1ipsiSCL6L11
Spinal cord layer 3 L1ipsiSCL3L13
Spinal cord layer 4 L1ipsiSCL4L13
Spinal cord layer 1 L1ipsiSCL1L13
Spinal cord layer 2 L1ipsiSCL2L13
Intermediate zone L1ipsiizVHL10.5
Spinal cord layer 7 L1ipsiSCL7L11
Spinal cord layer 8 L1ipsiSCL8L11
Spinal cord layer 9 L1ipsiSCL9L11
Area X L2ipsiSCL10L21
Spinal cord layer 5 L2ipsiSCL5L21
Spinal cord layer 6 L2ipsiSCL6L21
Spinal cord layer 3 L2ipsiSCL3L23
Spinal cord layer 4 L2ipsiSCL4L23
Spinal cord layer 1 L2ipsiSCL1L23
Spinal cord layer 2 L2ipsiSCL2L23
Intermediate zone L2ipsiizVHL20.5
Spinal cord layer 7 L2ipsiSCL7L21
Spinal cord layer 8 L2ipsiSCL8L21
Spinal cord layer 9 L2ipsiSCL9L21
Area X L3ipsiSCL10L31
Spinal cord layer 5 L3ipsiSCL5L31
Spinal cord layer 6 L3ipsiSCL6L31
Spinal cord layer 3 L3ipsiSCL3L33
Spinal cord layer 4 L3ipsiSCL4L33
Spinal cord layer 1 L3ipsiSCL1L33
Spinal cord layer 2 L3ipsiSCL2L33
Intermediate zone L3ipsiizVHL30.5
Spinal cord layer 7 L3ipsiSCL7L31
Spinal cord layer 8 L3ipsiSCL8L31
Spinal cord layer 9 L3ipsiSCL9L31
Area X L4ipsiSCL10L41
Spinal cord layer 5 L4ipsiSCL5L41
Spinal cord layer 6 L4ipsiSCL6L41
Spinal cord layer 3 L4ipsiSCL3L43
Spinal cord layer 4 L4ipsiSCL4L43
Spinal cord layer 1 L4ipsiSCL1L43
Spinal cord layer 2 L4ipsiSCL2L43
Intermediate zone L4ipsiizVHL40.5
Spinal cord layer 7 L4ipsiSCL7L41
Spinal cord layer 8 L4ipsiSCL8L41
Spinal cord layer 9 L4ipsiSCL9L41
Area X L5ipsiSCL10L51
Spinal cord layer 5 L5ipsiSCL5L51
Spinal cord layer 6 L5ipsiSCL6L51
Spinal cord layer 3 L5ipsiSCL3L53
Spinal cord layer 4 L5ipsiSCL4L53
Spinal cord layer 1 L5ipsiSCL1L53
Spinal cord layer 2 L5ipsiSCL2L53
Intermediate zone L5ipsiizVHL50.5
Spinal cord layer 7 L5ipsiSCL7L51
Spinal cord layer 8 L5ipsiSCL8L51
Spinal cord layer 9 L5ipsiSCL9L51
Area X L6ipsiSCL10L61
Spinal cord layer 5 L6ipsiSCL5L61
Spinal cord layer 6 L6ipsiSCL6L61
Spinal cord layer 3 L6ipsiSCL3L63
Spinal cord layer 4 L6ipsiSCL4L63
Spinal cord layer 1 L6ipsiSCL1L63
Spinal cord layer 2 L6ipsiSCL2L63
Intermediate zone L6ipsiizVHL60.5
Spinal cord layer 7 L6ipsiSCL7L61
Spinal cord layer 8 L6ipsiSCL8L61
Spinal cord layer 9 L6ipsiSCL9L61
Sublingual glandcontraOrgSubLGL1
Submandibular glandcontraOrgsSubg1
KidneycontraOrgsKid-0.5
Intercapsular brown adipose tissueipsiOrgBATi-10
Sublingual glandipsiOrgSubLGL-0.5
Submandibular glandipsiOrgsSubg1
KidneyipsiOrgsKid-0.5

Input from

NameSideAbbr.WeightDetails
Periaqueductal graycontraPAG1
Substantia nigra compact partcontraSNC1
Ventral tegmental area A10contraVTA2
Caudal linear nucleus of the raphecontraCLi1
Pedunculopontine tegmental nucleuscontraPPTg2
Locus coeruleuscontraLC2
Nucleus incertuscontraNI1
Mesencephalic reticular formationcontraMRF1
Pontine reticular nucleus oral partcontraPnO1
Pontine reticular nucleus caudal partcontraPNC1
Dorsal raphe nucleuscontraDR2
Median raphe nucleuscontraMnR1
Horizontal branch of diagonal band of BrocacontraHBDBB0.5
Nucleus of the horizontal limb of the diagonal bandcontraHDB1
Nucleus of the vertical limb of the diagonal bandcontraVDB0.5
Substantia innominatacontraSI1
Magnocellular preoptic nucleuscontraMCPO1
Lateral hypothalamic areacontraLH1
Posterior hypothalamic areacontraPHA1
Supramammillar nucleuscontraSuM1
Anteromedial thalamic nucleuscontraAM1
Anteroventral thalamic nucleus ventrolateral partcontraAVVL1
Interoanteromedial thalamic nucleuscontraIAM1
Central medial thalamic nucleuscontraCM2
Centrolateral thalamic nucleuscontraCL2
Paracentral thalamic nucleuscontraPC1
Rhomboid thalamic nucleuscontraRh2
Mediodorsal thalamic nucleuscontraMD2
Intermediodorsal thalamic nucleuscontraIMD1
Paratenial thalamic nucleuscontraPT2
Paraventricular thalamic nucleuscontraPV2
Reuniens thalamic nucleuscontraRe2
Ventromedial thalamic nucleuscontraVM2
Lateral posterior thalamic nucleuscontraLP1
Zona incertacontraZI1
Anterior basolateral nucleuscontraBLA2
Anterior basomedial nucleuscontraBMA1
Amygdalopiriform transition areacontraAPir1
Medial amygdaloid nucleuscontraMe1
ClaustrumcontraCl0.5
Globus palliduscontraGP1
Ventral pallidumcontraVP1
Field CA1 of hippocampuscontraCA11
Entorhinal cortexcontraEnt1
Retrosplenial regionscontraRS2
Retrosplenial granular cortex subdivisionscontraRSGsu0.5
Anterior cingulate cortexcontraACC2
Prelimbic cortexcontraPrL2
Infralimbic cortexcontraIL1
Parietal cortex posterior areacontraParP1
Parietal cortex posterior area caudolateral partcontraParPcLa0.5
Temporal cortexcontraTE1
Auditory regionscontraAU1
Frontal polar cortex medial partcontraFPm2
Agranular insular cortex dorsal partcontraAID2
Agranular insular cortex posterior partcontraAIP2
Granular insular cortexcontraGI1
Dorsal part of the granular insular cortex rostroventrally adjacent to the rostralmost part of S2contradGlrvs20
Perirhinal cortexcontraA352
Ectorhinal cortexcontraA361
Subrhinal areacontraSuRCx1
Lateral agranular prefrontal cortexcontraAGl2
Wrist motor cortexcontraWrMCx0.5
Whiskers motor cortexcontraWMCx0.5
Medial agranular prefrontal cortexcontraAGm2
Medial agranular prefrontal cortex layer 5contraAGmL5-0.5
Medial agranular prefrontal cortex rostral partcontrarAGm-0.5
Primary somatosensory cortexcontraS12
Secondary somatosensory cortexcontraS22
Primary visual cortexcontraV11
Secondary visual cortexcontraV22
Lateral orbital cortexcontraLO1
Medial orbital cortexcontraMO2
Ventral orbital cortexcontraVO2
Ventrolateral orbital areacontraVLO2
Interpeduncular nucleuscontraIP1
Central grayipsiCG0.5
Paralemniscal nucleusipsiPL0
Periaqueductal grayipsiPAG2
Periaqueductal gray surrounding nucleus raphe dorsalisipsiPAGsRD-0.5
Superior colliculusipsiSC1
Substantia nigra compact partipsiSNC1
Substantia nigra medial partipsiSNM-0.5
Substantia nigra reticular partipsiSNR1
Ventral tegmental area A10ipsiVTA1
Parabrachial pigmented nucleusipsiPBP-0.5
Caudal linear nucleus of the rapheipsiCLi2
Laterodorsal tegmental nucleusipsiLDTg0
Dorsal tegmental nucleus pericentral partipsiDTgP0
Pedunculopontine tegmental nucleusipsiPPTg3
Locus coeruleusipsiLC1
Nucleus incertusipsiNI2
Nucleus incertus pars compactaipsiNIc1
Nucleus incertus pars dissipataipsiNId1
Reticular systemipsiRF1
Mesencephalic reticular formationipsiMRF1
Pontine reticular nucleus oral partipsiPnO1
Pontine reticular nucleus caudal partipsiPNC1
Raphe nucleiipsiRAN1
Dorsal raphe nucleusipsiDR1
Dorsal raphe nucleus caudal partipsiDRC-0.5
Dorsal raphe nucleus main partipsiDRmain-0.5
Dorsal raphe nucleus rostral tipipsiDRrt-0.5
Rostral linear nucleus of the rapheipsiRLi0
Median raphe nucleusipsiMnR1
Superior central raphe nucleusipsiCS-0.5
Pontine raphe nucleusipsiPnR1
Endopiriform systemipsiEnN1
Dorsal endopiriform nucleusipsiDEn0
Ventral endopiriform nucleusipsiVEn0
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Basal nucleus MeynertipsiB1
Basal nucleus Meynert medial partipsiBmp-0.5
Rostral nucleus basalis MeynertipsiBro-0.5
Substantia innominataipsiSI1
Medial preoptic areaipsiMPA1
Magnocellular preoptic nucleusipsiMCPO2
Dorsal tenia tectaipsiDTT0
Ventral tenia tectaipsiVTT0
Tuberomammillary nucleusipsiTuM1
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area [Region of tuber cinereum]ipsiLHTUC0.5
Lateral hypothalamic areaipsiLH-0.5
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Peduncular part of lateral hypothalamusipsiPLH1
Lateroanterior hypothalamic nucleusipsiLAH-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0
Posterior hypothalamic areaipsiPHA2
Posterior hypothalamic nucleus caudal partipsiPHCa1
Posterior hypothalamic nucleus rostral partipsiPHRo2
Ventromedial hypothalamic nucleusipsiVMH0
Dorsomedial hypothalamic nucleus [Periventricular zone]ipsiDMpz0
Supramammillar nucleusipsiSuM2
Anteromedial thalamic nucleusipsiAM3
Anteromedial thalamic nucleus ventral partipsiAMV-0.5
Anteroventral thalamic nucleus ventrolateral partipsiAVVL2
Interoanteromedial thalamic nucleusipsiIAM3
Central medial thalamic nucleusipsiCM1
Central medial thalamic nucleus caudal partipsiCMca0.5
Central medial thalamic nucleus rostral partipsiCMr-0.5
Centrolateral thalamic nucleusipsiCL2
Centrolateral thalamic nucleus dorsal partipsiCLD2
Centrolateral thalamic nucleus rostral partipsiCLr2
Centrolateral thalamic nucleus ventral portionipsiCLV1.5
Gelatinosus thalamic nucleusipsiG0
Paracentral thalamic nucleusipsiPC2
Parafascicular thalamic nucleusipsiPF2
Parafascicular thalamic nucleus lateral partipsiPFL1
Rhomboid thalamic nucleusipsiRh1
Posterior thalamic nuclear groupipsiPo2
Suprageniculate thalamic nucleusipsiSG-0.5
Ventral part of the lateral thalamusipsiVLAT-0.5
Mediodorsal thalamic nucleusipsiMD1
Intermediodorsal thalamic nucleusipsiIMD1
Mediodorsal thalamic nucleus central partipsiMDC-0.5
Mediodorsal thalamic nucleus lateral partipsiMDL2
Mediodorsal thalamic nucleus medial partipsiMDM-0.5
Mediodorsal thalamic nucleus paralemellar divisionipsiMDpL-0.5
Paratenial thalamic nucleusipsiPT-0.5
Paraventricular thalamic nucleusipsiPV-0.5
Paraventricular thalamic nucleus anterior partipsiPVA0
Paraventricular thalamic nucleus posterior partipsiPVP0
Reuniens thalamic nucleusipsiRe1.5
Reuniens thalamic nucleus dorsocaudal partipsiRedc0
Ventral anterior-lateral complex of the thalamusipsiVAL3
Ventro anterior thalamic nucleusipsiVA3
Ventrolateral thalamic nucleusipsiVL2
Afferent-dominant zone of the ventral anterior-lateral complex of the thalamusipsiADVAVL-0.5
Ventral posterolateral thalamic nucleusipsiVPL1
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Ventromedial thalamic nucleusipsiVM3
Intralaminar nuclei lateral partipsiILNL1
Posterior intralaminar thalamic nucleusipsiPIL1
Parafascicular nucleusipsiPFa1
Lateral posterior thalamic nucleusipsiLP2
Caudomedial lateral posterior thalamic nucleusipsiLPcm0.5
Lateral posterior thalamic nucleus lateral partipsiLPTL1
Lateral posterior thalamic nucleus laterorostral part lateral regionipsiLPLRL1
Lateral posterior thalamic nucleus mediorostral part medial regionipsiLPMRm2
Rostromedial lateral posterior thalamic nucleusipsiLPrm1
Laterodorsal thalamic nucleusipsiLD1
Laterodorsal thalamic nucleus ventrolateral partipsiLDVL-1
Posterior groupipsiPTG-0.5
Reticular thalamic nucleus prosomere 1ipsip1RT-0.5
Ventral medial nucleus of the thalamusipsiVMT-0.5
Zona incertaipsiZI1
Nucleus of the fields of ForelipsiF0.5
Xiphoid thalamic nucleusipsiXi1
Internal capsuleipsiic-2
Amygdaloid complexipsiAC1
Basolateral amygdaloid nucleusipsiBL-0.5
Anterior basolateral nucleusipsiBLA4
Basolateral nucleus rostral partipsiBLRP2
Posterior basolateral nucleusipsiBLP2.5
Basomedial amygdaloid nucleusipsiBM0.5
Anterior basomedial nucleusipsiBMA1
Posterior basomedial nucleusipsiBMP1.5
Lateral amygdaloid nucleusipsiLA0
Dorsolateral part of the lateral nucleusipsiLaDL0
Ventrolateral part of the lateral nucleusipsiLaVL0
Ventromedial part of the lateral nucleusipsiLaVM0
Extended amygdalaipsiEXA1
Bed nucleus of the stria terminalisipsiBST1
Central amygdaloid nucleusipsiCe1
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC1
Amygdalopiriform transition areaipsiAPir1
Anterior amygdaloid areaipsiAA1
Anterior cortical amygdaloid nucleusipsiACo0
Posterior amygdaloid nucleusipsiCOAp1
Posterolateral cortical nucleusipsiPLCo0
Nucleus of the lateral olfactory tractipsiLOT0
Medial amygdaloid nucleusipsiMe1
Amygdalohippocampal area anterolateral partipsiAHiAL0
Amygdalohippocampal area posteromedial partipsiAHiPM0
Posteromedial cortical nucleusipsiPMCo0
ClaustrumipsiCl4
Anterior part of the claustrumipsiACl3
Dorsolateral part of claustrumipsiCLDL3
Globus pallidusipsiGP2
Lateral globus pallidusipsiLGP3
Ventral pallidumipsiVP3
Accumbens nucleus coreipsiAcbC1
Accumbens nucleus shellipsiAcbSh1
Caudate putamenipsiCPu4
Dorsocentral striatumipsiDCS2
Subthalamic nucleusipsiSTh1
Subthalamic nucleus caudal partipsiSThc2
Anterior hippocampal formationipsiAHCf2
Dentate gyrusipsiDG0
Field CA1 of hippocampusipsiCA1-0.5
Field CA1 of hippocampus dorsalipsiCA1d0.5
Field CA1 of hippocampus ventral partipsiCA1v0.5
Field CA2 of hippocampusipsiCA20
Field CA3 of hippocampusipsiCA30
SubiculumipsiS0
Subiculum dorsal partipsiSd0
Subiculum ventral partipsiSv0
Indusium griseumipsiIG0
PresubiculumipsiPrS0
ParasubiculumipsiPaS0
PostsubiculumipsiPost0
Entorhinal cortexipsiEnt0.5
Dorsolateral entorhinal cortexipsiDLEnt1.5
Mid-rostral level of dorsolateral entorhinal cortex layer 4ipsiDLEntMrL4-0.5
Mid-rostral level of dorsolateral entorhinal cortex layer 5ipsiDLEntMrL5-0.5
Mid-rostral level of dorsolateral entorhinal cortex layer 6ipsiDLEntMrL6-0.5
Lateral entorhinal cortexipsiLEnt1
Medial entorhinal cortexipsiMEnt0.5
Medial entorhinal cortex dorsal partipsiMEntD1.5
Caudal entorhinal field 1ipsiCEnt11
Piriform cortexipsiPir1
Postpiriform transition areaipsiTR0
Retrosplenial regionsipsiRS3
Retrosplenial dorsalipsiRSd3
Retrosplenial ventral partipsiRSPv4
Retrosplenial ventral aipsiRSv-a2.5
Retrosplenial area ventral part zone b/cipsiRSPv-bc3
Retrosplenial agranular cortexipsiRSA2.5
Midrostrocaudal part of the retrosplenial dysgranular cortexipsiRSdysmrc1
Retrosplenial dysgranular cortex rostral partipsiRSdysRo3
Retrosplenial granular cortex c regionipsiRSGc0
Cingulate cortexipsiCg2
Anterior cingulate cortexipsiACC1
Cingulate cortex area 1ipsiCg11
Cingulate cortex area 2ipsiCg21
Dorsal anterior cingulate cortexipsiDACC3
Ventral anterior cingulate cortexipsiVACC2.5
Prelimbic cortexipsiPrL3
Infralimbic cortexipsiIL2.5
Frontal cortex area 2ipsiFr22
Parietal cortex posterior areaipsiParP3
Parietal cortex posterior area caudal partipsiParPC1
Parietal cortex posterior area layersipsiParPLa3
Parietal cortex posterior area caudolateral partipsiParPcLa-0.5
Parietal cortex posterior area dorsal partipsiParPD1
Parietal cortex area 1ipsiPar11
Parietal cortex area 2ipsiPar21
Parietal cortex ventral area caudal partipsiParVC1
Temporal cortexipsiTE2
Temporal association area 3ipsiTe31
Auditory regionsipsiAU2
Primary auditory cortexipsiAu11.5
Ventral auditory areasipsiAUDv1.5
Frontal polar cortex medial partipsiFPm3
Insular cortexipsiICX2
Agranular insular cortexipsiAI2
Agranular insular cortex dorsal partipsiAID3
Agranular insular cortex posterior partipsiAIP3
Agranular insular cortex ventral partipsiAIV0
Dysgranular insular cortexipsiDI0
Gustatory dysgranular insular cortexipsiDIg1.5
Caudalmost area of the dysgranular insular cortexipsiDIvCM1
Rostrocaudal middle level of the dysgranular insular cortexipsiDIrcm1
Granular insular cortexipsiGI2
Caudalmost area of the granular insular cortexipsiGICm1
Dorsal part of the granular insular cortex rostroventrally adjacent to the rostralmost part of S2ipsidGlrvs22
Rostrocaudal middle level of the granular insular cortexipsiGIrcm1
Perirhinal cortexipsiA353
Perirhinal cortex layer 4ipsiA35L41
Perirhinal cortex layer 5ipsiA35L51
Perirhinal cortex layer 6ipsiA35L61
Perirhinal cortex rostrocaudal partipsiA35rc-0.5
Ectorhinal cortexipsiA363
Ectorhinal cortex rostrocaudal partipsiA36rc-0.5
Postrhinal cortexipsiPOR4
Dorsal peduncular cortexipsiDP0
Prefrontal cortexipsiPFC-0.5
Anterior prefrontal cortexipsiAPFC-0.5
Motoric regionsipsiM4
Lateral agranular prefrontal cortexipsiAGl3
Caudal forelimb motor areaipsiCFMA2
Rostral forelimb motor areaipsiRFMA2
Wrist motor cortexipsiWrMCx0.5
Lateral agranular prefrontal cortex layer 5aipsiAGlL5a0
Whiskers motor cortexipsiWMCx0.5
Medial agranular prefrontal cortexipsiAGm1
Medial agranular prefrontal cortex rostral part layer 5ipsirAGmL51
Primary somatosensory cortexipsiS13
Posteromedial barrel subfieldipsiPMBSF-0.5
Posteromedial barrel subfield C2ipsiPMBSFC23
Posteromedial barrel subfield D1ipsiPMBSFD13
Posteromedial barrel subfield D2ipsiPMBSFD23
Posteromedial barrel subfield D5ipsiPMBSFD53
Primary somatosensory cortex dysgranular regionipsiS1DZ-0.5
Primary somatosensory cortex lower lip regionipsiS1LL-0.5
Primary somatosensory cortex upper lip regionipsiS1ULp-0.5
Primary somatosensory cortex layer 5ipsiS1L53
Primary somatosensory cortex layer 6ipsiS1L63
Primary somatosensory cortex layer 2ipsiS1L23
Primary somatosensory cortex layer 3ipsiS1L33
Primary somatosensory cortex forelimb regionipsiS1FL1
Primary somatosensory cortex forelimb region forepawipsiS1FP-0.5
Primary somatosensory cortex proximal forelimb regionipsiS1FLP-0.5
Primary somatosensory cortex hindlimb regionipsiS1HL1
Primary somatosensory cortex foot regionipsiS1HPfr-0.5
Primary somatosensory cortex hindlimb leg regionipsiS1HLLe-0.5
Primary somatosensory cortex hindlimb toe regionipsiS1HLT-0.5
Primary somatosensory cortex shoulder regionipsiS1Sh-0.5
Primary somatosensory cortex trunk regionipsiS1Tr-0.5
Secondary somatosensory cortexipsiS22
Somatosensory genital cortexipsiSRg1
Posterior prefrontal cortexipsiPoPFC-0.5
Visual regionsipsiVR3
Primary visual cortexipsiV13
Posterior half of the primary visual cortexipsiV1ph0
Secondary visual cortexipsiV23
Secondary visual cortex medial areaipsiV2M1
Secondary visual cortex medial area posterior partipsiV2MP0
Secondary visual cortex lateral areaipsiV2L2
Primary visual cortex binocular areaipsiV1B2.5
Intermediolateral cortical visual areaipsiVISli1.5
Laterolateral cortical visual areaipsiVISll2.5
Mediolateral cortical visual areaipsiVISlm1.5
Posterolateral cortical visual areaipsiVISpl1
Rostrolateral cortical visual areaipsiVISrl1
Anteromedial cortical visual areaipsiVISam3
Dorsolateral orbital cortexipsiDLO3
Lateral orbital cortexipsiLO2.5
Lateral orbital cortex caudal partipsiLOc1
Lateral orbital cortex rostral partipsiLOr1
Medial orbital cortexipsiMO2
Ventral orbital cortexipsiVO3
Ventrolateral orbital areaipsiVLO3
Interpeduncular nucleusipsiIP1
Accessory olfactory bulbipsiAOB0
Olfactory bulb A16ipsiMOB0
Anterior olfactory nucleusipsiAON1.5
Olfactory tubercleipsiTuO1
Lateral septal nucleus intermediate partipsiLSI0
LungipsiOrgsLung-10
Trachea sideipsiOrgsTras2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications