University of Rostock

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Rat connectome



Cerebral peduncle basal part right


Abbreviation
cp
Color       
Superior regionsLarge fiber tracts

SynonymsAbbr.Language
Pedunculus cerebri  
Crus cerebri  
Cerebral peduncle basal partcpEng
Cerebral pedunclecpEng

SubregionsSide
Caudal one third of the cerebral peduncle at the level of the pontine nucleiright
Crus cerebri dorsolateral part to the most dorsal tipright
Dorsal part of the crus cerebriright
Lateral one third of the cerebral peduncleright
Lateral portion of the cerebral peduncleright
Lateral surface of the cerebral peduncleright
Medial one third of the cerebral peduncleright
Midportion of the cerebral peduncleright
Ventrolateral aspect of the cerebral peduncleright
Ventromedial part of the crus cerebriright
Medial part of crus cerebriright
Central portion of crus cerebriright
Lateral part of crus cerebriright
Most medial part of the cerebral peduncle basal partright
Medial edge of the cerebral peduncleright
Superior cerebral peduncleright
Cerebral peduncle dorsalmost partright
Cerebral peduncle dorsolateral partright
Dorsalmost part of the cerebral peduncleright
Cerebral peduncle at the rostral level of the mesencephalonright
Dorsolateral cerebral peduncle basal partright

Output to

NameSideAbbr.WeightDetails
Pontine reticular nucleus oral partcontraPnO3
Intertrigeminal nucleuscontraI5-2
Motor trigeminal nucleuscontraMo5-2
Motor trigeminal nucleus caudal partcontraMo5C-2
Motor trigeminal nucleus dorsolateral partcontraMo5DL-2
Motor trigeminal nucleus dorsomedial partcontraMo5DM-2
Motor trigeminal nucleus ventrolateral partcontraMo5vL-2
Rostral part of the motor trigeminal nucleuscontraMo5ro-2
Principal sensory trigeminal nucleus lateral partcontraPr5La-2
Spinal trigeminal nucleuscontraSp5nc-2
Orofacial motor cortexcontraOFCx0
Central gray mesencephalic part inferior colliculus levelipsiCGMinf-1
Central gray mesencephalic part superior colliculus levelipsiCGMsc-1
Medial longitudinal fasciculusipsimlf-2
Superior colliculusipsiSC0
Substantia nigra compact partipsiSNC-2
Substantia nigra reticular partipsiSNR-2
PonsipsiP-2
Pons rostral partipsiPro-2
Pontine reticular nucleus oral partipsiPnO3
Motor trigeminal nucleus caudal partipsiMo5C-2
Rostral part of the motor trigeminal nucleusipsiMo5ro-2
Endopiriform systemipsiEnN-2
Subthalamic nucleusipsiSTh1
Cerebral cortexipsiCEC0
Agranular insular cortex ventral part jaw movement areaipsiAIVjm-2
Forelimb motor cortexipsiFMCx-2
Caudal forelimb motor areaipsiCFMA-2
Lateral part of the granular cortex of forelimb motor regionsipsiLFMCx-2
Jaw movement motor cortexipsiJMCx-2

Input from

NameSideAbbr.WeightDetails
Agranular insular cortexcontraAI-2
Orofacial motor cortexcontraOFCx0
Substantia nigra A9ipsiSN-0.5
Substantia nigra compact part middle two thirdsipsiSNCmitt-2
Substantia nigra reticular part caudal tieripsiSNRca1
Substantia nigra reticular part rostral tieripsiSNRro1
Lateral hypothalamic areaipsiLH-0.5
Ventromedial hypothalamic nucleusipsiVMH-2
Parafascicular thalamic nucleusipsiPF-0.5
Caudate putamenipsiCPu0.5
Caudal striatumipsiCPuc1
Dorsal striatumipsiCPud3
Rostral striatumipsiCPur1
Middle-third of the caudate putamenipsiCPuMit2
Subthalamic nucleusipsiSTh1
Parasubthalamic nucleusipsiPSTh-2
Subthalamic nucleus medial partipsiSThM-2
Subthalamic nucleus medial capipsiSThMc-2
Cerebral cortexipsiCEC-0.5
Retrosplenial agranular cortexipsiRSA-0.5
Retrosplenial granular cortex b region rostrocaudal middle layersipsiRSGbrcmL-2
Cingulate cortex area 3 layer 5ipsiCg3L5-2
NeocortexipsiNEOCX-2
Frontal association cortex layer 5ipsiFrALL5-2
Agranular insular cortexipsiAI-2
Multiform cells of the gustatory dysgranular insular cortex layer 5ipsiDIgL5mf-2
Pyramidal cells of the gustatory dysgranular insular cortex layer 5ipsiDIgL5py-2
Rostral two-thirds of the dysgranular insular cortexipsiRDIrtt-2
Rostral two-thirds of the granular insular cortexipsiRttGI-2
Dorsal granular insular cortexipsiDGI-2
Motoric regionsipsiM-0.5
Lateral prefrontal cortexipsilPFC-2
Forelimb motor cortexipsiFMCx-2
Caudal forelimb motor areaipsiCFMA-2
Multiform cells of the neck forelimb motor cortex layer 3ipsiNFMCxL3mf-2
Pyramidal cells of the neck forelimb motor cortex layer 3ipsiNFMCxL3py-2
Multiform cells of the neck forelimb motor cortex layer 5ipsiNFMCxL5mf-2
Pyramidal cells of the neck forelimb motor cortex layer 5ipsiNFMCxL5py-2
Multiform cells of the neck forelimb motor cortex layer 6ipsiNFMCxL6mf-2
Pyramidal cells of the neck forelimb motor cortex layer 6ipsiNFMCxL6py-2
Lateral part of the granular cortex of forelimb motor regionsipsiLFMCx-2
Rostral part of lateral agranular prefrontal cortex layer 5ipsiAGlrL5-2
Rostrolateral part of the lateral agranular prefrontal cortexipsiAGlRL-2
Jaw movement motor cortexipsiJMCx-2
Multiform cells of the jaw movement motor cortex dorsolateral part layer 5ipsiJMCxDLL5Mc-2
Pyramidal cells of the jaw movement motor cortex dorsolateral part layer 5ipsiJMCxDLL5py-2
Multiform cells of the jaw movement motor cortex dorsolateral part layer 6ipsiJMCxDLL6Mc-2
Pyramidal cells of the Jaw movement motor cortex dorsolateral part layer 6ipsiJMCxDLL6py-2
Whiskers motor cortex layer 5ipsiWMCxL51
Whiskers motor cortex layer 6ipsiWMCxL61
Rostromedial border of the lateral agranular prefrontal cortexipsiAGlrm-2
Medial prefrontal cortexipsimPFC-2
Medial agranular prefrontal cortex rostral part layer 5ipsirAGmL5-2
Primary somatosensory cortexipsiS1-0.5
Primary somatosensory cortex barrel fieldipsiS1BF-0.5
Posteromedial barrel subfield C2ipsiPMBSFC2-2
Posteromedial barrel subfield D1ipsiPMBSFD1-2
Posteromedial barrel subfield D2ipsiPMBSFD2-2
Posteromedial barrel subfield D5ipsiPMBSFD5-2
Primary somatosensory cortex barrel field layer 5ipsiS1BF54
Primary somatosensory cortex caudolateral partipsiS1CL-2
Primary somatosensory cortex caudomedial partipsiS1CM-2
Primary somatosensory cortex central partipsiS1Ce-2
Primary somatosensory cortex face regionipsiS1FR-2
Primary somatosensory cortex forelimb regionipsiS1FL-2
Primary somatosensory cortex hindlimb regionipsiS1HL-2
Central dysgranular zone between E4 whisker and forelimb barrel field layers 5ipsiS1BFcdysL5-2
Central dysgranular zone between E4 whisker and forelimb barrel field layers 6ipsiS1BFcdysL6-2
Posterior dygranular zone between whisker and trunk representation layer 5ipsiS1pdyL5-2
Posterior dygranular zone between whisker and trunk representation layer 6ipsiS1pdyL6-2
Secondary somatosensory cortex layer 5ipsiS2L5-2
Primary visual cortexipsiV1-2
Secondary visual cortex medial areaipsiV2M-2
Secondary visual cortex lateral areaipsiV2L-2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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