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Rat connectome



Parafascicular thalamic nucleus right


Abbreviation
PF
Color       
Superior regionsIntralaminar nuclei of the dorsal thalamus

SynonymsAbbr.Language
 Pfc 
Parafascicular nucleus of thalamus  
Nucleus parafascicularis  
Parafascicular thalamus  
Parafascicular-centrum medianum complex Eng
Parafascicular area Eng
Parafascicular thalamic nucleusPFEng
Parafascicular nucleus of the thalamus Eng
Parafascicular thalamic nucleuspfEng
Parafascicular nucleusPFEng

SubregionsSide
Parafascicular thalamic nucleus caudal partright
Parafascicular thalamic nucleus dorsal partright
Parafascicular thalamic nucleus dorsolateral partright
Parafascicular thalamic nucleus dorsomedial partright
Parafascicular thalamic nucleus intermediate partright
Parafascicular thalamic nucleus lateral partright
Parafascicular thalamic nucleus lateral to the fasciculus retroflexusright
Parafascicular thalamic nucleus medial partright
Parafascicular thalamic nucleus prerubral partright
Parafascicular thalamic nucleus rostral partright
Parafascicular thalamic nucleus rostrolateral partright
Parafascicular thalamic nucleus ventral partright
Parafascicular thalamic nucleus ventrolateral partright
Parafascicular thalamic nucleus ventromedial partright
Parafascicular thalamic nucleus neuronright
Parafascicular thalamic nucleus inferior partright
Parafascicular thalamic nucleus dorsocaudal partright

Output to

NameSideAbbr.WeightDetails
Nuclei of the lateral lemniscuscontraNLL2
Red nucleuscontraR2
Superior colliculuscontraSC-0.5
Central tegmental field dorsal partcontraTGACd0
Laterodorsal tegmental nucleuscontraLDTg2
Ventral tegmental nucleuscontraVTg1
Dorsal tegmental nucleuscontraDTg1
Pedunculopontine tegmental nucleuscontraPPTg0.5
Locus coeruleuscontraLC1
Pontine reticular nucleuscontraPRN-0.5
Ventrolateral pontine reticular formationcontravlPRF0
Peribrachial regioncontraPBR-0.5
Lateral parabrachial nucleuscontraLPB1
Medullary reticular nucleus dorsal partcontraMdDd0.5
Dorsomedial portion of the spinal trigeminal nucleus oral partcontraSp5ODM-0.5
Raphe magnus nucleuscontraRMg-0.5
Raphe obscurus nucleuscontraROb1
Inferior olivecontraIO-0.5
Paragigantocellular reticular nucleuscontraPGi-0.5
Lateral paragigantocellular nucleuscontraLPGi0
Rostral ventral respiratory groupcontraRVRG1
HypothalamuscontraHYPO-0.5
Dorsal thalamuscontraDOR0
Parafascicular thalamic nucleuscontraPF0
Posterior thalamic nuclear groupcontraPo2
Intralaminar nuclei anterior partcontraILNA2
Lateral thalamic nuclear groupcontraLTNG2
Reticular thalamic nucleus dorsal partcontraRtD-0.5
Zona incertacontraZI2
Zona incerta dorsal partcontraZID2
Lateral globus palliduscontraLGP0
Medial globus palliduscontraMGP-0.5
Caudate putamencontraCPu3
Lateral striatumcontraCPul0
Subthalamic nucleuscontraSTh0.5
Cingulate cortexcontraCg0
Anterior cingulate cortexcontraACC-0.5
Frontal cortex area 1contraFr10
Frontal cortex area 2contraFr20
Agranular insular cortex dorsal partcontraAID-0.5
Agranular insular cortex ventral partcontraAIV-0.5
Motoric regionscontraM0
Ventral lateral geniculate nucleuscontraVLG2
Ventral horn C1contraVHC11
Ventral horn C2contraVHC21
Ventral horn C3contraVHC31
Ventral horn C4contraVHC41
Ventral horn C5contraVHC51
Ventral horn C6contraVHC61
Ventral horn C7contraVHC71
Ventral horn C8contraVHC81
Central grayipsiCG0
Central gray mesencephalic part inferior colliculus levelipsiCGMinf0.5
Central gray mesencephalic part superior colliculus levelipsiCGMsc0.5
Nuclei of the lateral lemniscusipsiNLL2
Paralemniscal reticular formationipsiPLRF-0.5
Nucleus of DarkschewitschipsiDk0
Oculomotor nucleusipsi30
Periaqueductal grayipsiPAG2.5
Ventrolateral periaqueductal grayipsiVLPAG3
Red nucleusipsiR2
Red nucleus parvicellular partipsiROC-0.5
Inferior colliculusipsiICOL-1
Superior colliculusipsiSC2
Superior colliculus intermediate and deep layersipsiSCidLa-0.5
Central tegmental field dorsal partipsiTGACd0
Nucleus intercruralisipsiNICr2
Rostromedial tegmental nucleusipsiRMTg1
Substantia nigra A9ipsiSN-0.5
Substantia nigra compact partipsiSNC3
Substantia nigra lateral partipsiSNL-0.5
Substantia nigra reticular partipsiSNR1
Ventral tegmental area A10ipsiVTA3
Peripeduncular nucleusipsiPP-0.5
Middle part of the retrorubral fieldipsiRRmi3
Laterodorsal tegmental nucleusipsiLDTg2
Ventral tegmental nucleusipsiVTg2
Dorsal tegmental nucleusipsiDTg1.5
Pedunculopontine tegmental nucleusipsiPPTg1
Perirubral areaipsiPeriR-0.5
Edinger Westphal nucleusipsiEW3
Locus coeruleusipsiLC2
Nucleus incertus pars dissipataipsiNId1
Nucleus pontis oralis medial partipsiPorM-0.5
Nucleus pontis oralis dorsomedial partipsiPorDM-0.5
Mesencephalic reticular formationipsiMRF2
Pontine reticular nucleusipsiPRN2
Pontine reticular nucleus oral part dorsomedial partipsiPnOdm2
Pontine reticular nucleus oral part medial partipsiPnOm2
Ventrolateral pontine reticular formationipsivlPRF2
Taste related region of the pontine reticular nucleusipsiPRNtr-0.5
Peribrachial regionipsiPBR-0.5
Lateral parabrachial nucleusipsiLPB2
Parabrachial nucleus medialipsiPBnMe-1
Medullary reticular nucleusipsiMdD-0.5
Medullary reticular nucleus dorsal partipsiMdDd1
Facial nucleusipsi72
Dorsomedial portion of the spinal trigeminal nucleus oral partipsiSp5ODM-0.5
Raphe nucleiipsiRAN2
Dorsal raphe nucleusipsiDR2
Linear nucleus of the rapheipsiLIR-0.5
Rostral linear nucleus of the rapheipsiRLi-0.5
Superior central raphe nucleusipsiCS-0.5
Superior central raphe nucleus lateral partipsiCSl2
Raphe magnus nucleusipsiRMg-0.5
Raphe obscurus nucleusipsiROb1
Inferior oliveipsiIO-0.5
Paragigantocellular reticular nucleusipsiPGi1
Lateral paragigantocellular nucleusipsiLPGi1
Retrotrapezoid nucleusipsiRTN2
Rostral ventral respiratory groupipsiRVRG0.5
Basal forebrainipsiBAF-0.5
Endopiriform systemipsiEnN-0.5
Diagonal band of BrocaipsiDBB2
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Nucleus of the vertical limb of the diagonal bandipsiVDB2
Basal nucleus MeynertipsiB1.5
Substantia innominataipsiSI2
Substantia innominata sublenticular partipsiSIS1
Lateral preoptic areaipsiLPO-0.5
Medial preoptic nucleusipsiMPO0
HypothalamusipsiHYPO2
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0.5
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area anterior partipsiLHAa2
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Lateral hypothalamic area posterior partipsiLHAp2
Tuberal region of lateral hypothalamusipsiTuLH2
Medial zoneipsiMHA0
Suprachiasmatic nucleusipsiSCh-3
Supramammillar nucleus anterior partipsiSuMa2
Supramammillar nucleus posterior partipsiSuMp2
A8 dopamine cells retrorubral group lateral partipsiRRFL3
A8 dopamine cells retrorubral group medial partipsiRRFm3
ThalamusipsiT0
Dorsal thalamusipsiDOR2
Gelatinosus thalamic nucleusipsiG2
Parafascicular thalamic nucleusipsiPF-0.5
Rhomboid thalamic nucleusipsiRh2
Posterior thalamic nuclear groupipsiPo-0.5
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Ventromedial thalamic nucleusipsiVM2
Ventral thalamusipsiVNT1.5
Reticular thalamic nucleusipsiRt2
Reticular thalamic nucleus external partipsiRtex2
Reticular thalamic nucleus medial partipsiRtm2
Reticular thalamic nucleus rostral partipsiRtr2
Zona incertaipsiZI2
Zona incerta ventral partipsiZIV2
Lateral habenular nucleusipsiLHb-0.5
Lateral habenular nucleus lateral partipsiLHbL-0.5
Pretectal regionipsiPRT2
Superficial pineal glandipsiSPi2
Internal capsuleipsiic-0.5
Cerebral peduncle basal partipsicp-0.5
Medial forebrain bundle at the level of the anterior commissureipsimfbac-2
Medial forebrain bundle at the level of the lateral preoptic areraipsimfbLpa-2
Medial forebrain bundle at the level of the anterior hypothalamic nucleusipsimfbahn-2
Medial forebrain bundle at the level of the lateral hypothalamusipsimfbLH-2
Medial forebrain bundle at the level of the posterior hypothalamic nucleusipsimfbPH-2
Amygdaloid complexipsiAC3
Basal nucleusipsiBnc2
Basal nucleus ventral divisonipsiBncV2
Basolateral amygdaloid nucleusipsiBL-3
Basolateral nucleus rostral partipsiBLRP-0.5
Lateral amygdaloid nucleusipsiLA-1
Dorsolateral part of the lateral nucleusipsiLaDL-0.5
Lateral nucleus ventral portionipsiLAVp-0.5
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv1
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL2
Bed nucleus of the stria terminalis medial divisionipsiBSTM2
Central amygdaloid nucleusipsiCe2
Central amygdaloid nucleus lateral divisionipsiCeL1
Central amygdaloid nucleus medial divisionipsiCeM2
Medial amygdaloid nucleusipsiMe2
Intercalated nuclei of the amygdalaipsiI-0.5
ClaustrumipsiCl1
Globus pallidusipsiGP3
Globus pallidus mediodorsal partipsiGPmd3
Lateral globus pallidusipsiLGP3
Medial globus pallidusipsiMGP2
Peripallidal regionipsiPePa2
Subpallidal regionipsiSuPa1
StriatumipsiSTR3
Accumbens nucleusipsiAc2
Accumbens nucleus coreipsiAcbC2
Accumbens nucleus posterolateral partipsiAcbpl3
Accumbens nucleus shellipsiAcbSh-0.5
Lateral nucleus accumbensipsiAcl2
Medial accumbensipsiAcbM1
Caudate putamenipsiCPu4
Anterior striatumipsiAStri0
Anteriorposterior part of caudate putamenipsiCPuAP2
Dorsomedial striatumipsiCPudm2
Medial striatumipsiCPum2
Dorsomedial caudate putamenipsiCPuDM3
Caudal striatumipsiCPuc3
Caudate putamen caudolateral partipsiCPucl2
Dorsal striatumipsiCPud3
Dorsocentral striatumipsiDCS3
Dorsolateral striatumipsiCPudl4
Mediolateral striatumipsiCPuml1
Posterior caudate putamenipsiCPup1
Rostral striatumipsiCPur4
Rostrocaudal striatumipsiCPurc1
Rostral striatum medial partipsiCPurme3
Striatal matrix compartmentipsiSMC-0.5
Striatal patch compartmentipsiSPC-0.5
Ventral striatumipsiCPuv-0.5
Ventrolateral striatumipsiCPuvl2
Ventromedial striatumipsiCPuvm2
Jaw region of the striatumipsiCPuJaw3
Lateral striatumipsiCPul2
Fundus of the striatumipsiFS-1
Subthalamic nucleusipsiSTh3
Subthalamic nucleus lateral partipsiSThl-0.5
Cerebral cortexipsiCEC-0.5
Parahippocampal regionipsiPHR1
Medial entorhinal cortex layer 5ipsiMEntLyL51.5
Piriform cortexipsiPir-0.5
Retrosplenial granular cortexipsiRSGra-0.5
Cingulate cortexipsiCg1
Anterior cingulate cortexipsiACC1
Cingulate cortex area 1ipsiCg11
Cingulate cortex area 1 caudal partipsiCg1c1
Cingulate cortex area 2ipsiCg21
Cingulate cortex area 2 caudal partipsiCg2c1
Prelimbic cortexipsiPrL1
Prelimbic cortex dorsal partipsiPrLd1
Prelimbic cortex layer 6ipsiPrLL61
Infralimbic cortexipsiIL1
Frontal association cortexipsiFrA2
Frontal association cortex layer 1ipsiFrALL11.5
Frontal association cortex layer 4ipsiFrALL41.5
Frontal association cortex layer 5ipsiFrALL51.5
Frontal association cortex layer 6ipsiFrALL61.5
Frontal cortex area 1ipsiFr12
Frontal cortex area 2ipsiFr22
Frontal cortex area 2 caudal partipsiFr2C1.5
Frontal cortex area 2 rostral partipsiFr2R1.5
Frontal cortex area 2 layer 4ipsiFr2L41.5
Frontal cortex area 2 layer 1ipsiFr2L11.5
Frontal cortex area 2 layer 5ipsiFr2L51.5
Frontal cortex area 2 layer 6ipsiFr2L61.5
Parietal association cortexipsiPtA2
Parietal cortex posterior areaipsiParP2
Parietal cortex posterior area caudal part of the lateral portionipsiParPcL-0.5
Parietal cortex posterior area medial portionipsimPPC1
Parietal cortex posterior area rostrocaudal extent of the medial portionipsimrcPPC1
Parietal association cortex layer 4ipsiParPLa41.5
Parietal association cortex layer 5ipsiParPLa51.5
Parietal association cortex layer 6ipsiParPLa61.5
Parietal association cortex layer 1ipsiParPLa11.5
Parietal cortex area 1ipsiPar11
Temporal cortexipsiTE1
Ventral temporal association cortexipsiTev-0.5
Base of the temporal cortical areaipsiTEB1
Insular cortexipsiICX-1
Agranular insular cortexipsiAI1
Agranular insular cortex caudal partipsiAIC2
Agranular insular cortex dorsal partipsiAID2
Agranular insular cortex dorsal part layer 4ipsiAIDL41.5
Agranular insular cortex dorsal part layer 1ipsiAIDL11.5
Agranular insular cortex layer 1ipsiAIL11.5
Agranular insular cortex layer 4ipsiAIL41.5
Agranular insular cortex posterior partipsiAIP2
Agranular insular cortex rostral partipsiRAIC2
Dysgranular insular cortexipsiDI1
Granular insular cortexipsiGI2
Granular insular cortex posterior partipsiGIpo2
Perirhinal cortexipsiA352
Perirhinal cortex anterior portionipsiPRha1
Perirhinal cortex dorsal portionipsiPRhd-0.5
Prefrontal cortexipsiPFC0.5
Dorsolateral pregenual sector of the prefrontal cortexipsipgPFCdL1
Motoric regionsipsiM2
Lateral agranular prefrontal cortexipsiAGl2
Forelimb motor cortexipsiFMCx3
Caudal forelimb motor areaipsiCFMA3
Rostral forelimb motor areaipsiRFMA1
Lateral part of the granular cortex of forelimb motor regionsipsiLFMCx3
Hindlimb motor cortexipsiHMCx1
Lateral agranular prefrontal cortex deep layersipsiAGldL1
Lateral agranular prefrontal cortex layer 5ipsiAGlL51.5
Lateral agranular prefrontal cortex layer 6ipsiAGlL63
Rostral part of lateral agranular prefrontal cortexipsiAGlr1
Central part of jaw motor areaipsiCJMCx3
Medial prefrontal cortexipsimPFC0
Medial agranular prefrontal cortexipsiAGm2
Medial agranular prefrontal cortex layer 1ipsiAGmL11.5
Medial agranular prefrontal cortex layer 4ipsiAGmL41.5
Medial agranular prefrontal cortex layer 5ipsiAGmL51.5
Medial agranular prefrontal cortex layer 6ipsiAGmL61.5
Medial agranular prefrontal cortex rostral partipsirAGm1
Posterior part of the medial agranular prefrontal cortexipsiPoAGm1
Sensory regionsipsiSR-0.5
Primary somatosensory cortexipsiS11
Posteromedial barrel subfield C3ipsiPMBSFC3-0.5
Rostral whisker areaipsiRS1BF1
Primary somatosensory cortex infragranular layersipsiS1Lig0.5
Primary somatosensory cortex layer 5ipsiS1L51.5
Primary somatosensory cortex layer 6ipsiS1L61.5
Primary somatosensory cortex layer 4ipsiS1L41.5
Primary somatosensory cortex layer 1ipsiS1L11.5
Primary somatosensory cortex layer 2ipsiS1L21
Primary somatosensory cortex layer 3ipsiS1L31
Primary somatosensory cortex rostral partipsiS1r0
Secondary somatosensory cortex border regionipsiS2br2
Visual regionsipsiVR1
Primary visual cortexipsiV11
Secondary visual cortex medial areaipsiV2M-0.5
Lateral orbital cortexipsiLO1
Ventral orbital cortexipsiVO-0.5
Commissural systemsipsicos-0.5
Ventral lateral geniculate nucleusipsiVLG2
Ventral lateral geniculate nucleus magnocellular partipsiVLGMC0
Ventral lateral geniculate nucleus parvicellular partipsiVLGPC3
Interpeduncular nucleusipsiIP-0.5
Olfactory tubercleipsiTuO1
Olfactory tubercle lateral partipsiTuOL1
Intermediomedial cell column C1ipsiIMMC1-0.5
Dorsal horn C1ipsiDHC1-0.5
Ventral horn C1ipsiVHC11
Dorsal horn C2ipsiDHC2-0.5
Ventral horn C2ipsiVHC21
Ventral horn C3ipsiVHC31
Ventral horn C4ipsiVHC41
Ventral horn C5ipsiVHC51
Ventral horn C6ipsiVHC61
Ventral horn C7ipsiVHC71
Ventral horn C8ipsiVHC81

Input from

NameSideAbbr.WeightDetails
Central graycontraCG1
Central gray pons partcontraCGP-0.5
Periaqueductal graycontraPAG-0.5
Dorsolateral periaqueductal graycontraDLPAG1
Lateral periaqueductal graycontraLPAG-0.5
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray medial partcontraPAGm0
Periaqueductal gray rostrocaudal extentcontraPAGroe3
Ventral periaqueductal graycontraVPAG0.5
Ventrolateral periaqueductal graycontraVLPAG1
Tegmental areacontraTGA1
Mesencephalic peribrachial tegmentumcontraTGAMPB0
Substantia nigra A9contraSN2
Substantia nigra compact partcontraSNC-0.5
Substantia nigra reticular partcontraSNR1
Ventral tegmental area A10contraVTA1
Ventrolateral tegmental areacontraVLTg1
Laterodorsal tegmental nucleuscontraLDTg2
Dorsal tegmental nucleuscontraDTg1
Dorsal tegmental nucleus lateral partcontraDLTN1
Pedunculopontine tegmental nucleuscontraPPTg-0.5
Dorsolateral humpcontraCERcndl0
Deep cerebellar nucleicontraDNC1
Interposed cerebellar nucleicontraICN3
Anterior interposed nucleuscontraAIN2
Posterior interposed nucleuscontraCERpin1
Lateral cerebellar nucleuscontraCERL3
Medial cerebellar nucleuscontraMed3
Superior cerebellar peduncle lateral tipcontrasucepLt1
Locus coeruleuscontraLC3
Nucleus incertus pars dissipatacontraNId2
Pontine sublaterodorsal nucleuscontraPsLdn3
Mesencephalic reticular formationcontraMRF1
Pontine reticular nucleuscontraPRN3
Pontine reticular nucleus oral partcontraPnO1
Ventrolateral pontine reticular formationcontravlPRF1
Pontine reticular nucleus caudal partcontraPNC-0.5
Lateral parabrachial nucleuscontraLPB-0.5
Parabrachial nucleus lateral crescentcontraPBlc2
Parabrachial nucleus dorsal partcontraPBD3
Lateral reticular nucleuscontraLRt-0.5
Medullary reticular nucleus dorsal partcontraMdDd3
Principal sensory trigeminal nucleuscontraPr54
Spinal trigeminal nucleuscontraSp5nc-0.5
Spinal trigeminal nucleus caudal partcontraSp5C0.5
Spinal trigeminal nucleus interpolar partcontraSp5I3
Spinal trigeminal nucleus oral partcontraSp5O1
Superior vestibular nucleuscontraSuVe1
Medial vestibular nucleuscontraMVe1
Medial vestibular nucleus caudal partcontraMVeP0.5
Lateral vestibular nucleuscontraLVe3
Dorsal raphe nucleuscontraDR3
Dorsal raphe nucleus dorsal partcontraDRD-0.5
Dorsal raphe nucleus dorsomedial subdivisioncontraDRdm-0.5
Dorsal raphe nucleus medial partcontraDRNM-0.5
Dorsal raphe nucleus rostral partcontraDRr1
Superior central raphe nucleus compact subnucleuscontraSCc-0.5
Cuneate nucleuscontraCu3
GracilecontraGra3
Nucleus of BischoffcontraNBi0.5
Medial preoptic nucleuscontraMPO-0.5
HypothalamuscontraHYPO1
Parafascicular thalamic nucleuscontraPF0
Suprageniculate thalamic nucleuscontraSG-0.5
Borderline between reticular thalamic nucleus and zona incertacontraRtZi1
Reticular thalamic nucleuscontraRt2
Reticular thalamic nucleus dorsal partcontraRtD0
Reticular thalamic nucleus rostral partcontraRtr0
Zona incertacontraZI1
Medial pretectal nucleuscontraMPT-0.5
Globus palliduscontraGP0
Lateral globus palliduscontraLGP1
Medial globus palliduscontraMGP1
Caudate putamencontraCPu0
Subthalamic nucleuscontraSTh0.5
Cerebrocortical neuronscontraCCN3
Supragranular layers of the neocortexcontraSGLncx3
Cerebral cortex layer 3contraCCL33
Deep cortical layer of the cerebral cortexcontracytolD3
Cerebral cortex layer 5contraCCL53
Frontal association cortexcontraFrA2
Dorsal part of the granular insular cortex rostroventrally adjacent to the rostralmost part of S2contradGlrvs20
Lateral prefrontal cortexcontralPFC2
Ventral lateral geniculate nucleuscontraVLG1
Spinal cordcontraMES2
Lateral cervical nucleuscontraLatC2
Cervical segment 1contraCS14
Spinal cord layers C1contraSCLC12.5
Cervical segment 2contraCS24
Spinal cord layers C2contraSCLC22.5
Cervical segment 3contraCS33
Spinal cord layers C3contraSCLC32.5
Cervical segment 4contraCS42
Spinal cord layers C4contraSCLC42
Cervical segment 5contraCS52
Spinal cord layers C5contraSCLC52
Cervical segment 6contraCS61
Spinal cord layers C6contraSCLC62
Cervical segment 7contraCS72
Lateral spinal nucleus C7contraLSpC70.5
Spinal cord layers C7contraSCLC72
Area X C7contraSCL10C70.5
Spinal cord layer 5 C7contraSCL5C70.5
Spinal cord layer 6 C7contraSCL6C70.5
Spinal cord layer 3 C7contraSCL3C70.5
Spinal cord layer 4 C7contraSCL4C70.5
Spinal cord layer 7 C7contraSCL7C70.5
Cervical segment 8contraCS82
Spinal cord layers C8contraSCLC82
Thoracal segment 1contraT11
Thoracal segment 2contraT21
Thoracal segment 3contraT31
Thoracal segment 4contraT40.5
Thoracal segment 5contraT50.5
Thoracal segment 6contraT60.5
Thoracal segment 7contraT71
Thoracal segment 8contraT80.5
Thoracal segment 9contraT92
Thoracal segment 10contraT102
Thoracal segment 11contraT112
Thoracal segment 12contraT121
Thoracal segment 13contraT131
Thoracal segments layer 4contraTSegL43
Thoracal segments layer 5contraTSegL53
Thoracal segments layer 7contraTSegL73
Thoracal segments layer 10contraTSegL103
Lumbar segment 1contraL13
Spinal cord layers L1contraSCLL10
Lumbar segment 2contraL23
Spinal cord layers L2contraSCLL20
Lumbar segment 3contraL33
Spinal cord layers L3contraSCLL30
Lumbar segment 4contraL42
Spinal cord layers L4contraSCLL40
Lumbar segment 5contraL52
Spinal cord layers L5contraSCLL50
Lumbar segment 6contraL63
Spinal cord layers L6contraSCLL60
Lumbar segments layer 4contraLSegL43
Lumbar segments layer 5contraLSegL53
Lumbar segments layer 7contraLSegL73
Lumbar segments layer 10contraLSegL103
Sacral segment 1contraSa13
Sacral segment 2contraSa23
Sacral segment 3contraSa31
Sacral segment 4contraSa41
Sacral segments layer 4contraSSegL43
Sacral segments layer 5contraSSegL53
Sacral segments layer 7contraSSegL73
Sacral segments layer 10contraSSegL103
Coccygeal segment 1contraCo11
Coccygeal segment 2contraCo21
Coccygeal segment 3contraCo31
Central grayipsiCG3
Central gray pons partipsiCGP-0.5
Central gray pons part pars alphaipsiSGCa-0.5
Fasciculus retroflexusipsifr-2
Periaqueductal grayipsiPAG3
Dorsal periaqueductal grayipsiDPAG1
Dorsolateral periaqueductal grayipsiDLPAG2
Dorsolateral periaqueductal gray caudal partipsiPAGdlc1
Dorsolateral periaqueductal gray rostral partipsiPAGdlr1
Lateral periaqueductal grayipsiLPAG2
Periaqueductal gray dorsal partipsiPAGd2
Periaqueductal gray medial partipsiPAGm0
Periaqueductal gray rostrolateral partipsiPAGRL1
Periaqueductal gray rostrocaudal extentipsiPAGroe3
Ventral periaqueductal grayipsiVPAG3
Ventrolateral periaqueductal grayipsiVLPAG3
Ventrolateral periaqueductal gray caudal partipsiPAGvlc1
Ventrolateral periaqueductal gray rostral partipsiPAGvlr2
Periventricular gray matteripsiPVG1.5
Intercollicular nucleusipsiInCo1
Superior colliculusipsiSC3
Superior colliculus lateral partipsiSCL-0.5
Superior colliculus intermediate and deep layersipsiSCidLa-0.5
Superior colliculus intermediate layersipsiSCi-0.5
Intermediate white layer of the superior colliculusipsiInWh0.5
Superior colliculus deep layersipsiSCd-0.5
Superior colliculus medial part deep layersipsimSCdL0.5
Midbrain extrapyramidal areaipsiMEA2
Peduncularpontine nucleusipsiPPN2
Peduncularpontine nucleus caudal levelsipsiPPNCa-0.5
Subpeduncular tegmental nucleusipsiSPTg2
Substantia nigra A9ipsiSN3
Substantia nigra compact partipsiSNC0.5
Substantia nigra compact part ventral tier dopaminergic neuron populationipsiSNCVdopa0.5
Substantia nigra lateral partipsiSNL3
Substantia nigra reticular partipsiSNR3
Substantia nigra reticular part dorsolateral tieripsiSNRDL1
Substantia nigra reticular part medial tieripsiSNRm4
Ventral tegmental area A10ipsiVTA2
Peripeduncular areaipsiPPA-1
Ventrolateral tegmental areaipsiVLTg1
Lateral tegmental areaipsiLTGA-0.5
Laterodorsal tegmental nucleusipsiLDTg3
Ventral tegmental nucleusipsiVTg-0.5
Dorsal tegmental nucleusipsiDTg2
Dorsal tegmental nucleus lateral partipsiDLTN2
Dorsal tegmental nucleus ventral partipsiDTgV-0.5
Pedunculopontine tegmental nucleusipsiPPTg2
Edinger Westphal nucleusipsiEW1
Dorsolateral humpipsiCERcndl0
Deep cerebellar nucleiipsiDNC1
Interposed cerebellar nucleiipsiICN2
Anterior interposed nucleusipsiAIN0
Posterior interposed nucleusipsiCERpin0
Lateral cerebellar nucleusipsiCERL2
Medial cerebellar nucleusipsiMed1
Mediolateral extent of the brachium conjunctivumipsibconML-0.5
Barringtons nucleusipsiBar2
Locus coeruleusipsiLC3
Locus coeruleus dorsal half of the compact partipsiLCcDhC3
Locus coeruleus middle partipsiLCmi3
Locus coeruleus rostral partipsiLCRo2
Prelocus coeruleus nucleusipsiPLC3
Nucleus incertus pars compactaipsiNIc-0.5
Nucleus incertus pars dissipataipsiNId1
Pons oral partipsiPor-0.5
Pontine sublaterodorsal nucleusipsiPsLdn3
Pontomesencephalic grayipsiPoMG-0.5
Reticulotegmental nucleusipsiRETn-0.5
Reticular systemipsiRF-1
Mesencephalic reticular formationipsiMRF3
Pontine reticular nucleusipsiPRN3
Pontine reticular nucleus oral partipsiPnO3
Ventrolateral pontine reticular formationipsivlPRF2
Taste related region of the pontine reticular nucleusipsiPRNtr-0.5
Pontine reticular nucleus caudal partipsiPNC2
Peribrachial regionipsiPBR2
Cuneiforme nucleusipsiCnF3
Parabrachial nucleusipsiPB4
Central medial parabrachial nucleus waistipsiCMPBw-1
Lateral parabrachial nucleusipsiLPB-0.5
Lateral parabrachial nucleus external partipsiLPBE-1
Lateral parabrachial nucleus external part inner portionipsiLPBEip0.5
Lateral parabrachial nucleus internal partipsiLPBI0.5
Lateral parabrachial nucleus ventral partipsiLPBV-1
Parabrachial nucleus lateral crescentipsiPBlc2
Parabrachial nucleus dorsal partipsiPBD1
Parabrachial nucleus dorsolateral partipsiPBDL-0.5
Parabrachial nucleus medialipsiPBnMe3
Medial parabrachial nucleus external partipsiMPBE-1
Pontine taste areaipsiPTA1
Rostral part of the parabrachial nucleus medialipsiPBnMeR3
Parabrachial nucleus rostral partipsiPBro2
Parabrachial nucleus ventral partipsiPBV3
Parabrachial nucleus ventrolateral partipsiPBveLa2.5
Parabrachial nucleus waist partipsiPBW3
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus caudal partipsiGiCa-0.5
Gigantocellular reticular nucleus dorsal partipsiGidp-0.5
Lateral reticular nucleusipsiLRt-0.5
Caudal part of the lateral reticular nucleusipsiCaLRt1
Ventrolateral part of the caudal part of the lateral reticular nucleusipsiVLCaLRt1
Ventromedial part of the caudal part of the lateral reticular nucleusipsiVMCaLRt1
Medullary reticular nucleusipsiMdD-0.5
Subnucleus reticularis dorsalisipsiSRD-0.5
Medullary reticular nucleus dorsal partipsiMdDd3
Subcoeruleus nucleusipsiSubC1
Subcoeruleus nucleus ventral partipsiSubCV2
Mesencephalic trigeminal nucleusipsiMe53
Principal sensory trigeminal nucleusipsiPr52
Spinal trigeminal nucleus caudal partipsiSp5C0.5
Spinal trigeminal nucleus caudal part layer 3ipsiSp5CaL32
Spinal trigeminal nucleus caudal part layer 1ipsiSp5CaL13
Spinal trigeminal nucleus caudal part layer 2ipsiSp5CaL21
Spinal trigeminal nucleus interpolar partipsiSp5I1.5
Spinal trigeminal nucleus oral partipsiSp5O0.5
Trigeminal subnucleus caudalisipsi5SSC1
Spinal vestibular nucleusipsiSpVe2
Vestibular nucleiipsiVnc-0.5
Superior vestibular nucleusipsiSuVe2
Medial vestibular nucleusipsiMVe2
Medial vestibular nucleus caudal partipsiMVeP0.5
Medial vestibular nucleus rostral part lateral partipsiMVeRL-0.5
Lateral vestibular nucleusipsiLVe1.5
Lateral third of the rostral half of the lateral vestibular nucleusipsiLVeRL2
Nucleus of the solitary tractipsiSol3
Parasolitary nucleusipsiPSol3
Dorsal motor nucleus of vagusipsi103
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal partipsiDRC2
Dorsal raphe nucleus dorsal partipsiDRD-0.5
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm-0.5
Dorsal raphe nucleus medial partipsiDRNM-0.5
Dorsal raphe nucleus middle part shell regionipsiDRsh1
Dorsal raphe nucleus rostral partipsiDRr3
Dorsal raphe nucleus central part of oral halfipsiDRcr-0.5
Dorsal raphe nucleus lateral part of oral halfipsiDRLr-0.5
Linear nucleus of the rapheipsiLIR-0.5
Rostral linear nucleus of the rapheipsiRLi-0.5
Median raphe nucleusipsiMnR2
Superior central raphe nucleusipsiCS2
Superior central raphe nucleus compact subnucleusipsiSCc-0.5
Pontine raphe nucleusipsiPnR1
Raphe magnus nucleusipsiRMg1
Raphe magnus nucleus rostral partipsiRMgR-0.5
Raphe obscurus nucleusipsiROb-0.5
Dorsal column nucleiipsiDCN-0.5
Cuneate nucleusipsiCu1.5
GracileipsiGra1.5
Nucleus of BischoffipsiNBi0.5
Inferior oliveipsiIO-0.5
Dorsal paragigantocellular nucleusipsiDPGi-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Nucleus of the vertical limb of the diagonal bandipsiVDB2
Medial preoptic areaipsiMPA1
HypothalamusipsiHYPO2
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar0
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR0
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp0
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area juxtadorsomedial regionipsiJDM1
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm0
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa0
Lateral hypothalamic area perifornical partipsiPFx2
Rostral medial hypothalamusipsiMdHrm0
Anterior hypothalamic areaipsiAHA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Posterior hypothalamic nucleus caudal partipsiPHCa3
Posterior hypothalamic nucleus rostral partipsiPHRo3
Ventromedial hypothalamic nucleusipsiVMH-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Suprachiasmatic nucleusipsiSCh0
Suprachiasmatic nucleus dorsal divisionipsiSChd-0.5
Supramammillar nucleus lateral part lateral subpartipsiSuMLL1
Supramammillar nucleus lateral part medial subpartipsiSuMLM1
Supramammillar nucleus medial partipsiSuMM1
A8 dopamine cells retrorubral groupipsiRRF2
Dorsal thalamusipsiDOR1
Parafascicular thalamic nucleusipsiPF-0.5
Posterior limitans thalamic nucleusipsiPLi-1
Posterior thalamic nuclear groupipsiPo-0.5
Suprageniculate thalamic nucleusipsiSG-0.5
Mediodorsal thalamic nucleusipsiMD-2
Paratenial thalamic nucleusipsiPT0
Paraventricular thalamic nucleusipsiPV-2
Paraventricular thalamic nucleus anterior partipsiPVA0
Paraventricular thalamic nucleus posterior partipsiPVP0
Reuniens thalamic nucleusipsiRe2
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Posterior intralaminar thalamic nucleusipsiPIL-1
Reticular thalamic nucleusipsiRt3
Very anterior tip of the nucleus reticularis thalamiipsiRtAva0
Reticular thalamic nucleus anteroventral partipsiRtAV1
Reticular thalamic nucleus dorsal partipsiRtD3
Reticular thalamic nucleus medial partipsiRtm3
Reticular thalamic nucleus middle sectoripsiRtms3
Reticular thalamic nucleus rostral partipsiRtr3
Reticular thalamic nucleus ventral partipsiRtV3
Subparafascicular thalamic nucleusipsiSPF2
Lateral subparafascicular thalamic nucleusipsiSPFL-1
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Zona incertaipsiZI3
Zona incerta dorsal partipsiZID3
Zona incerta ventral partipsiZIV3
HabenulaipsiHAB-2
Lateral habenular nucleusipsiLHb-0.5
Medial habenular nucleusipsiMHb0
Pretectal regionipsiPRT2
Anterior pretectal nucleusipsiAPT-1
Ventral part of the caudal half of the anterior pretectal nucleusipsiAPTcaV3
Dorsolateral wing of the anterior pretectal nucleusipsiAPTdL-0.5
Medial pretectal nucleusipsiMPT-0.5
Posterior pretectal nucleusipsiPPT-0.5
Pretectal region rostral partipsiPRTr-2
Internal capsuleipsiic-0.5
Medial lemniscusipsiml-0.5
Basolateral amygdaloid nucleusipsiBL1
Basomedial amygdaloid nucleusipsiBM1
Bed nucleus of the stria terminalisipsiBST1
Central amygdaloid nucleusipsiCe2
Anterior cortical amygdaloid nucleusipsiACo2
Amygdalohippocampal areaipsiAHi2
Globus pallidusipsiGP2
Lateral globus pallidusipsiLGP2
Medial globus pallidusipsiMGP3
Medial globus pallidus dorsal partipsiMGPd1
Medial globus pallidus rostral partipsiMGPr3
Medial globus pallidus ventral partipsiMGPv1
Peripallidal regionipsiPePa3
Subpallidal regionipsiSuPa2
StriatumipsiSTR3
Accumbens nucleus coreipsiAcbC-0.5
Caudate putamenipsiCPu2
Dorsal striatumipsiCPud2
Dorsolateral striatumipsiCPudl3
Posterior caudate putamenipsiCPup1
Ventral striatumipsiCPuv1
Lateral striatumipsiCPul1.5
Subthalamic nucleusipsiSTh1
Cerebrocortical neuronsipsiCCN3
Supragranular layers of the neocortexipsiSGLncx3
Cerebral cortex layer 3ipsiCCL33
Deep cortical layer of the cerebral cortexipsicytolD3
Cerebral cortex layer 5ipsiCCL53
Anterior cingulate cortexipsiACC1
Prelimbic cortexipsiPrL1.5
Infralimbic cortexipsiIL1
Frontal association cortexipsiFrA2
Frontal association cortex lateroventral part layer 6ipsiFrALVL6-0.5
Frontal association cortex layer 5ipsiFrALL53
Frontal cortex area 2ipsiFr22
Frontal cortex medial aspectipsiFrAma0
Parietal association cortexipsiPtA-0.5
Parietal cortex posterior area rostral part layer 6ipsiParPRL6-0.5
Temporal cortexipsiTE-0.5
Agranular insular cortex posterior part pressor siteipsiAIPp1
Gustatory dysgranular insular cortex deep layersipsiDIgLD1
Dorsal granular insular cortexipsiDGI1
Dorsal part of the granular insular cortex rostroventrally adjacent to the rostralmost part of S2ipsidGlrvs20
Perirhinal cortex anterior portion layer 3 to layer 5ipsiPRhaL3L51
Perirhinal cortex anterior portion layer 5 to layer 6ipsiPRhaL5L62
Perirhinal cortex anterior portion layer 6ipsiPRhaL62
Motoric regionsipsiM-0.5
Lateral agranular prefrontal cortexipsiAGl-0.5
Caudal part of lateral agranular prefrontal cortex layer 5ipsiAGlcL51.5
Caudal part of lateral agranular prefrontal cortex layer 6ipsiAGlcL63
Rostral part of lateral agranular prefrontal cortexipsiAGlr2
Rostral part of lateral agranular prefrontal cortex layer 5ipsiAGlrL51.5
Rostral part of lateral agranular prefrontal cortex layer 6ipsiAGlrL63
Whisker motor cortex subfieldsipsiWMCxS1
Whiskers motor cortex layer 5ipsiWMCxL5-0.5
Whiskers motor cortex layer 6ipsiWMCxL6-0.5
Medial prefrontal cortexipsimPFC3
Medial agranular prefrontal cortexipsiAGm2
Medial agranular prefrontal cortex caudal part layer 5ipsicAGmL51.5
Medial agranular prefrontal cortex caudal part layer 6ipsicAGmL63
Medial agranular prefrontal cortex rostral partipsirAGm2
Posterior part of the medial agranular prefrontal cortexipsiPoAGm1
Primary somatosensory cortexipsiS11
Primary somatosensory cortex caudal part layer 5ipsiS1cL5-0.5
Primary somatosensory cortex layer 5ipsiS1L51.5
Primary somatosensory cortex layer 6ipsiS1L63
Primary somatosensory cortex forelimb regionipsiS1FL-0.5
Primary somatosensory cortex hindlimb regionipsiS1HL-0.5
Primary somatosensory cortex rostral partipsiS1r2
Primary somatosensory cortex rostral part layer 6ipsiS1rL6-0.5
Visual regionsipsiVR-0.5
Medial orbital cortexipsiMO1
Ventral orbital cortexipsiVO0
Lateral geniculate complexipsiLG-0.5
Ventral lateral geniculate nucleusipsiVLG2
Ventral lateral geniculate nucleus magnocellular partipsiVLGMC0
Ventral lateral geniculate nucleus parvicellular partipsiVLGPC3
Medial geniculate nucleusipsiMG1
Interpeduncular nucleusipsiIP3
Interpeduncular nucleus medial part ventral partipsiIPMV1
Interpeduncular nucleus paramedian partipsiIPPM1
Spinal cordipsiMES1
Lateral cervical nucleusipsiLatC1
Ventral root C1ipsivrC1-2
Spinal cord layers C1ipsiSCLC11.5
Spinal cord layer 5 C1ipsiSCL5C12
Spinal cord layer 4 C1ipsiSCL4C12
Spinal cord layer 7 C1ipsiSCL7C12
Ventral root C2ipsivrC2-2
Spinal cord layers C2ipsiSCLC21.5
Spinal cord layer 5 C2ipsiSCL5C22
Spinal cord layer 4 C2ipsiSCL4C22
Spinal cord layer 7 C2ipsiSCL7C22
Ventral root C3ipsivrC3-2
Spinal cord layers C3ipsiSCLC31.5
Spinal cord layer 5 C3ipsiSCL5C32
Spinal cord layer 4 C3ipsiSCL4C32
Spinal cord layer 7 C3ipsiSCL7C32
Ventral root C4ipsivrC4-2
Spinal cord layers C4ipsiSCLC41
Ventral root C5ipsivrC5-2
Spinal cord layers C5ipsiSCLC51
Area X C5ipsiSCL10C52
Spinal cord layer 5 C5ipsiSCL5C52
Spinal cord layer 4 C5ipsiSCL4C52
Spinal cord layer 7 C5ipsiSCL7C52
Ventral root C6ipsivrC6-2
Spinal cord layers C6ipsiSCLC61
Area X C6ipsiSCL10C62
Spinal cord layer 5 C6ipsiSCL5C62
Spinal cord layer 4 C6ipsiSCL4C62
Spinal cord layer 7 C6ipsiSCL7C62
Ventral root C7ipsivrC7-2
Lateral spinal nucleus C7ipsiLSpC70.5
Spinal cord layers C7ipsiSCLC71
Area X C7ipsiSCL10C70.5
Deep dorsal horn C7ipsiDDHC7-0.5
Spinal cord layer 5 C7ipsiSCL5C70.5
Spinal cord layer 3 C7ipsiSCL3C70.5
Spinal cord layer 4 C7ipsiSCL4C70.5
Spinal cord layer 1 C7ipsiSCL1C70
Spinal cord layer 2 C7ipsiSCL2C70
Ventral root C8ipsivrC8-2
Spinal cord layers C8ipsiSCLC81
Thoracal segment 6ipsiT61
Thoracal segment 7ipsiT71
Thoracal segment 8ipsiT81
Thoracal segment 9ipsiT91
Thoracal segments layer 4ipsiTSegL42
Thoracal segments layer 5ipsiTSegL52
Thoracal segments layer 7ipsiTSegL72
Thoracal segments layer 10ipsiTSegL102
Spinal cord layers L1ipsiSCLL10
Spinal cord layers L2ipsiSCLL20
Spinal cord layers L3ipsiSCLL30
Spinal cord layers L4ipsiSCLL40
Spinal cord layers L5ipsiSCLL50
Lumbar segment 6ipsiL61
Spinal cord layers L6ipsiSCLL60
Lumbar segments layer 4ipsiLSegL42
Lumbar segments layer 5ipsiLSegL52
Lumbar segments layer 7ipsiLSegL72
Lumbar segments layer 10ipsiLSegL102
Sacral segments layer 4ipsiSSegL42
Sacral segments layer 5ipsiSSegL52
Sacral segments layer 7ipsiSSegL72
Sacral segments layer 10ipsiSSegL102
LungipsiOrgsLung-10
Trachea sideipsiOrgsTras2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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