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Rat connectome



Field CA1 of hippocampus dorsal right


Abbreviation
CA1d
Color       
Superior regionsField CA1 of hippocampus

SynonymsAbbr.Language
Field CA1 of hippocampus dorsalCA1d 

SubregionsSide
Field CA1 of hippocampus dorsal layersright
Field CA1 of hippocampus dorsal posteriorright

Output to

NameSideAbbr.WeightDetails
Medial mammillary nucleus dorsal partcontraMMnd3
Dorsal endopiriform nucleusipsiDEn0
Ventral endopiriform nucleusipsiVEn0
Preoptic regionipsiPREO1
Dorsal tenia tectaipsiDTT1
Ventral tenia tectaipsiVTT0
Anterior hypothalamic area around the fornixipsiAHAdF2
Tuberal areaipsiTA1
Medial mammillary nucleus dorsal partipsiMMnd3
Subincertal nucleusipsiSubI1
Reuniens thalamic nucleusipsiRe1
Medial corticohypothalamic tractipsimcht0
Postcommissural fornixipsifpc-2
Basolateral amygdaloid nucleusipsiBL1
Anterior basolateral nucleusipsiBLA0
Posterior basolateral nucleusipsiBLP0
Basomedial amygdaloid nucleusipsiBM2
Anterior basomedial nucleusipsiBMA0
Posterior basomedial nucleusipsiBMP0
Lateral amygdaloid nucleusipsiLA1
Amygdalopiriform transition areaipsiAPir1
Cortical amygdaloid nucleusipsiCAn2
Anterior cortical amygdaloid nucleusipsiACo0
Posterior amygdaloid nucleusipsiCOAp0
Posterolateral cortical nucleusipsiPLCo0
Nucleus of the lateral olfactory tractipsiLOT2
Posteromedial cortical nucleusipsiPMCo0
ClaustrumipsiCl0
Rostral pole of the accumbens nucleusipsiAcbRP2
Accumbens nucleus ventral regionsipsiAcV2
HippocampusipsiHIPP-0.5
Dentate gyrusipsiDG1.5
Dentate gyrus molecular layeripsiDGmL0.5
Polymorph layer of the dentate gyrusipsiDGpo0.5
Field CA1 of hippocampus ventral partipsiCA1v0
Field CA3 of hippocampusipsiCA33
SubiculumipsiS1
Subiculum dorsal partipsiSd4
Subiculum ventral partipsiSv0.5
Indusium griseumipsiIG0
PresubiculumipsiPrS1
ParasubiculumipsiPaS2
PostsubiculumipsiPost3
Lateral entorhinal cortexipsiLEnt3
Lateral entorhinal cortex lateral partipsiLEntLa0.5
Lateral entorhinal cortex medial partipsiLEntM0.5
Lateral entorhinal cortex intermediate partipsiLEnti1
Medial entorhinal cortexipsiMEnt3
Medial entorhinal cortex dorsal partipsiMEntD4
Medial entorhinal cortex lateral partipsiMEntL3
Medial entorhinal field medial partipsiMEntFm-0.5
Medial entorhinal cortex intermediate partipsiMEntFim-0.5
Piriform cortexipsiPir1
Postpiriform transition areaipsiTR2
Retrosplenial regionsipsiRS2
Retrosplenial dorsalipsiRSd1
Retrosplenial ventral partipsiRSPv1.5
Retrosplenial ventral aipsiRSv-a0
Retrosplenial area ventral part zone b/cipsiRSPv-bc0
Retrosplenial cortex middle part layer 1ipsiRSmiL1-0.5
Retrosplenial cortex middle part layer 2ipsiRSmiL2-0.5
Retrosplenial cortex middle part layer 3ipsiRSmiL3-0.5
Retrosplenial cortex middle part layer 4ipsiRSmiL4-0.5
Retrosplenial cortex middle part layer 5ipsiRSmiL5-0.5
Retrosplenial cortex middle part layer 6ipsiRSmiL6-0.5
Retrosplenial agranular cortexipsiRSA0
Retrosplenial granular cortexipsiRSGra1
Retrosplenial granular cortex a regionipsiRSGa1
Dorsal anterior cingulate cortexipsiDACC0
Ventral anterior cingulate cortexipsiVACC0
Prelimbic cortexipsiPrL1.5
Infralimbic cortexipsiIL1.5
Parietal cortex posterior areaipsiParP0
Temporal cortexipsiTE0
Temporal association cortex 1ipsiTeA2
Auditory regionsipsiAU0
Primary auditory cortexipsiAu10
Ventral auditory areasipsiAUDv0
Agranular insular cortex dorsal partipsiAID0
Agranular insular cortex posterior partipsiAIP0
Agranular insular cortex ventral partipsiAIV0
Gustatory dysgranular insular cortexipsiDIg0
Granular insular cortexipsiGI0
Perirhinal cortexipsiA351
Ectorhinal cortexipsiA361
Postrhinal cortexipsiPOR1
Motoric regionsipsiM1.5
Lateral agranular prefrontal cortexipsiAGl0
Medial agranular prefrontal cortexipsiAGm0.5
Primary somatosensory cortexipsiS10
Secondary somatosensory cortexipsiS20
Primary visual cortexipsiV10
Primary visual cortex binocular areaipsiV1B0
Laterolateral cortical visual areaipsiVISll1
Mediolateral cortical visual areaipsiVISlm0
Posterolateral cortical visual areaipsiVISpl0
Anteromedial cortical visual areaipsiVISam0
Lateral orbital cortexipsiLO0
Ventral orbital cortexipsiVO0
Ventrolateral orbital areaipsiVLO0
Precommissural fornixipsipcf-2
Accessory olfactory bulbipsiAOB0
Olfactory bulb A16ipsiMOB0
Anterior olfactory nucleusipsiAON0
Lateral septal nucleusipsiLS3
Dorsomedial tip of the lateral septal nucleus rostral part medial zoneipsiLSrmdmt-0.5

Input from

NameSideAbbr.WeightDetails
Field CA3 of hippocampuscontraCA30
Caudal linear nucleus of the rapheipsiCLi0
Locus coeruleusipsiLC-0.5
Dorsal raphe nucleusipsiDR1
Dorsal raphe nucleus interfascicular partipsiDRI-0.5
Dorsal raphe nucleus ventromedial subdivisionipsiDRvme2
Median raphe nucleusipsiMnR-0.5
Median raphe nucleus rostrocaudal extentipsiMnRrc2
Dorsal endopiriform nucleusipsiDEn0
Ventral endopiriform nucleusipsiVEn0
Nucleus of the horizontal limb of the diagonal band medial partipsiHDBm2
Nucleus of the vertical limb of the diagonal band caudal partipsiVDBc1.5
Nucleus of the vertical limb of the diagonal band rostromedial partipsiVDBrm3
Medial septal nucleus lateral partipsiMSLa1
Medial septal nucleus medial partipsiMSm2.5
Supramammillar nucleusipsiSuM-0.5
Rhomboid thalamic nucleusipsiRh2
Reuniens thalamic nucleusipsiRe3
Reuniens thalamic nucleus dorsal partipsiReD3
Ventral bank of the rhinal fissure dorsal partipsiVBrfD2.5
Ventral bank of the rhinal fissure rostral partipsiVBrfR2
Anterior basolateral nucleusipsiBLA0.5
Posterior basolateral nucleusipsiBLP0
Anterior basomedial nucleusipsiBMA0
Posterior basomedial nucleusipsiBMP0
Lateral amygdaloid nucleusipsiLA0
Ventromedial part of the lateral nucleusipsiLaVM0.5
Amygdalopiriform transition areaipsiAPir0
Anterior cortical amygdaloid nucleusipsiACo0
Posterior amygdaloid nucleusipsiCOAp0
Posterolateral cortical nucleusipsiPLCo0
Posteromedial cortical nucleusipsiPMCo1
ClaustrumipsiCl0
Dentate gyrusipsiDG-0.5
Field CA1 of hippocampusipsiCA1-0.5
Field CA1 of hippocampus ventral partipsiCA1v0
Field CA2 of hippocampusipsiCA2-0.5
Field CA3 of hippocampusipsiCA33
SubiculumipsiS-0.5
Subiculum dorsal partipsiSd2
Subiculum ventral partipsiSv0
Fimbria fornix regionipsififo-2
Indusium griseumipsiIG0
PresubiculumipsiPrS0
ParasubiculumipsiPaS1
PostsubiculumipsiPost0
Lateral entorhinal cortexipsiLEnt3
Lateral entorhinal cortex lateral partipsiLEntLa3
Lateral entorhinal cortex medial partipsiLEntM1
Lateral entorhinal cortex intermediate partipsiLEnti1
Medial entorhinal cortexipsiMEnt4
Medial entorhinal cortex dorsal partipsiMEntD4
Medial entorhinal cortex lateral partipsiMEntL3
Medial entorhinal field medial partipsiMEntFm0.5
Piriform cortexipsiPir0
Postpiriform transition areaipsiTR0
Retrosplenial ventral partipsiRSPv0
Retrosplenial ventral aipsiRSv-a0
Retrosplenial agranular cortexipsiRSA0
Dorsal anterior cingulate cortexipsiDACC0
Ventral anterior cingulate cortexipsiVACC0
Cingulumipsicg-2
Prelimbic cortexipsiPrL0
Infralimbic cortexipsiIL0
Temporal cortexipsiTE0
Auditory regionsipsiAU0
Primary auditory cortexipsiAu10
Ventral auditory areasipsiAUDv0
Agranular insular cortex posterior partipsiAIP0
Granular insular cortexipsiGI0
Perirhinal cortexipsiA352
Ectorhinal cortexipsiA361
Postrhinal cortexipsiPOR0.5
Motoric regionsipsiM0
Lateral agranular prefrontal cortexipsiAGl0
Medial agranular prefrontal cortexipsiAGm0
Primary somatosensory cortexipsiS10
Secondary somatosensory cortexipsiS20
Primary visual cortexipsiV10
Secondary visual cortex lateral areaipsiV2L0
Primary visual cortex binocular areaipsiV1B0
Laterolateral cortical visual areaipsiVISll0
Anteromedial cortical visual areaipsiVISam0
Ventral orbital cortexipsiVO0
Interpeduncular nucleus apical subnucleusipsiIPA0
Interpeduncular nucleus lateral subnucleusipsiIPL0
Olfactory bulb A16ipsiMOB0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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