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Rat connectome



Perirhinal cortex layer 5 right


Abbreviation
A35L5
Color       
Superior regionsPerirhinal cortex inner layers

SynonymsAbbr.Language
Perirhinal cortex layer 5A35L5 
Perirhinal cortex layer 5PRhL5 

SubregionsSide
Perirhinal cortex layer 5 aright

Output to

NameSideAbbr.WeightDetails
Pontine nucleicontraPn0.5
Fr1-Fr3-transition areacontraFr1Fr3T1
Frontal cortex area 2contraFr21
Parietal cortex posterior area medial portioncontramPPC0.5
Granular insular cortexcontraGI2
Secondary somatosensory cortexcontraS2-0.5
Intermediomedial cell column C1contraIMMC11
Dorsal horn C1contraDHC11
Dorsal horn C2contraDHC21
Tegmental areaipsiTGA0
Reticulotegmental nucleusipsiRETn0
Pontine nucleiipsiPn0.5
Posterior thalamic nuclear groupipsiPo1
Zona incertaipsiZI3
Lateral amygdaloid nucleusipsiLA1
StriatumipsiSTR2.5
Ventromedial accumbensipsiAcbVM3
HippocampusipsiHIPP0
Dentate gyrusipsiDG0
Field CA1 of hippocampusipsiCA10
SubiculumipsiS0
Entorhinal cortexipsiEnt3
Lateral entorhinal cortexipsiLEnt2
Lateral entorhinal cortex caudal partipsiLEntC3
Lateral entorhinal cortex layer 2ipsiLEntL2-0.5
Lateral entorhinal cortex layer 3ipsiLEntL3-0.5
Lateral entorhinal cortex medial partipsiLEntM0.5
Lateral entorhinal cortex rostrolateral partipsiLEntrL3
Medial entorhinal cortexipsiMEnt0.5
Medial entorhinal cortex layer 2ipsiMEntLyL2-0.5
Medial entorhinal cortex layer 3ipsiMEntLyL3-0.5
Dorsal anterior cingulate cortexipsiDACC1
Prelimbic cortexipsiPrL3
Prelimbic cortex caudal partipsiPrLc1.5
Prelimbic cortex rostral partipsiPrLr3
Fr1-Fr3-transition areaipsiFr1Fr3T3
Frontal cortex area 2ipsiFr23
Parietal association cortexipsiPtA0
Parietal cortex posterior area medial portionipsimPPC-0.5
Insular cortexipsiICX3
Agranular insular cortex caudal partipsiAIC3
Agranular insular cortex ventral partipsiAIV3
Granular insular cortexipsiGI2
Perirhinal cortexipsiA351.5
Rostrocaudal perirhinal cortexipsiPRhrc3
Postrhinal cortex rostral partipsiPoSR1.5
Lateral prefrontal cortexipsilPFC3
Medial agranular prefrontal cortexipsiAGm1
Secondary somatosensory cortexipsiS22
Ventral medial prefrontal cortexipsivmPFC3
Primary visual cortexipsiV13
Primary visual cortex rostral partipsiV1R2
Secondary visual cortexipsiV2-0.5
Secondary visual cortex lateral areaipsiV2L-1
Area between retrosplenial cortex and secondary visual cortex medial areaipsiRSCbV2m3
Precommissural nucleusipsiPrC-0.5
Lateral septal nucleus intermediate partipsiLSI-0.5
Orbicularis oculi musclecontraMuscOrbOc-0.5
Orbicularis oculi muscleipsiMuscOrbOc1

Input from

NameSideAbbr.WeightDetails
Retrosplenial agranular cortex caudal partcontraRSAC-0.5
Mid rostrocaudal part of the retrosplenial granular cortexcontraMRCRSG1
Agranular insular cortex posterior part depressor sitecontraAIPd1
Granular insular cortexcontraGI2
Perirhinal cortex anterior portion layer 5contraPRhaL51
Secondary somatosensory cortexcontraS2-0.5
Anterodorsal thalamic nucleus caudal partipsiADca0.5
Anteromedial thalamic nucleus rostral partipsiAMr3
Anteroventral thalamic nucleus central partipsiAVCe1
Interoanteromedial thalamic nucleusipsiIAM2
Rhomboid thalamic nucleusipsiRh2
Paraventricular thalamic nucleus anterior partipsiPVA2
Paraventricular thalamic nucleus rostrocaudal partipsiPVrc2
Accessory basal nucleus parvicellular divisionipsiABp3
Basal nucleus intermediate divisionipsiBnci1
Basal nucleus magnocellular partipsiBmc2
Basal nucleus parvicellular partipsiBpc1
Anterior basolateral nucleusipsiBLA-0.5
Posterior basolateral nucleusipsiBLP-0.5
Posterior basomedial nucleusipsiBMP3
Lateral amygdaloid nucleusipsiLA1
Lateral nucleus caudal two-thirdsipsiLActt-0.5
Lateral nucleus medial partipsiLAM3
Ventromedial part of the lateral nucleusipsiLaVM3
Central amygdaloid nucleusipsiCe0
Amygdalopiriform transition areaipsiAPir2
Anterior amygdaloid areaipsiAA1
Posterior amygdaloid nucleusipsiCOAp1
Medial globus pallidusipsiMGP0
Dorsal striatum ventral one-quarteripsiCPudVoq0
Lateral entorhinal cortex caudal partipsiLEntC3
Lateral entorhinal cortex layer 3ipsiLEntL3-0.5
Lateral entorhinal cortex layer 5ipsiLEntL5-0.5
Lateral entorhinal cortex rostrolateral partipsiLEntrL3
Medial entorhinal cortexipsiMEnt0.5
Medial entorhinal cortex layer 4ipsiMEntLyL4-0.5
Retrosplenial agranular cortex caudal partipsiRSAC-0.5
Retrosplenial agranular cortex rostral partipsiRSAr3
Mid rostrocaudal part of the retrosplenial granular cortexipsiMRCRSG2
Agranular insular cortex dorsal part deep layersipsiAIDdL3
Anterior part of the agranular insular cortex dorsal partipsiAAID-0.5
Anterior part of the agranular insular cortex dorsal part layer 2ipsiAAIDL23
Anterior part of the agranular insular cortex dorsal part layer 3ipsiAAIDL33
Anterior part of the agranular insular cortex dorsal part layer 4ipsiAAIDL43
Anterior part of the agranular insular cortex dorsal part layer 5ipsiAAIDL53
Agranular insular cortex posterior partipsiAIP2
Agranular insular cortex posterior part depressor siteipsiAIPd1
Agranular insular cortex ventral part layer 3ipsiAIVL32
Agranular insular cortex ventral part layer 5ipsiAIVL52
Agranular insular cortex ventral part layer 6ipsiAIVL62
Granular insular cortexipsiGI2
Parietal granular insular cortex layer 2ipsiGIParL2-0.5
Parietal granular insular cortex layer 3ipsiGIParL3-0.5
Parietal granular insular cortex layer 4ipsiGIParL4-0.5
Parietal granular insular cortex layer 5ipsiGIParL5-0.5
Perirhinal cortexipsiA353
Perirhinal cortex layer 2ipsiA35L2-0.5
Perirhinal cortex layer 3ipsiA35L3-0.5
Ectorhinal cortex layer 2ipsiA36L2-0.5
Ectorhinal cortex layer 6ipsiA36L6-0.5
Postrhinal cortex layer 2ipsiPORL2-0.5
Postrhinal cortex layer 5ipsiPORL5-0.5
Whiskers motor cortex layer 2ipsiWMCxL2-0.5
Whiskers motor cortex layer 3ipsiWMCxL3-0.5
Whiskers motor cortex layer 5ipsiWMCxL5-0.5
Secondary somatosensory cortexipsiS22
Secondary visual cortex medial areaipsiV2M3
Lateromedial area of subdivision 18a in lateral extrastriate cortexipsiLMV2L-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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