University of Rostock

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Rat connectome



Dorsal horn C1 left


Abbreviation
DHC1
Color       
Superior regionsSpinal cord layers C1

SynonymsAbbr.Language
Dorsal horn C1DHC1Eng
Posterior horn C1 Eng

SubregionsSide
Base of the dorsal horn C1left
Deep dorsal horn C1left
Dorsal horn C1 magnocellular zoneleft
Dorsal horn C1 rostrocaudal columnleft
Intermediate zone of dorsal horn C1left
Neck of dorsal horn C1left
Nucleus proprius C1left
Superficial dorsal horn C1left
Medial dorsal horn C1left
Dorsal horn C1 layers 3 to 5left

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG1
Nuclei of the lateral lemniscusipsiNLL1
Prerubral fieldipsiPR-3
Inferior colliculusipsiICOL1
Superior colliculusipsiSC1
Central tegmental field dorsal partipsiTGACd0
Laterodorsal tegmental nucleusipsiLDTg1
Dorsal tegmental nucleusipsiDTg0
Pedunculopontine tegmental nucleusipsiPPTg1.5
Mesencephalic reticular formationipsiMRF1
Pontine reticular nucleus dorsal partipsiPRNd3
Parabrachial nucleusipsiPB-0.5
Lateral parabrachial nucleusipsiLPB1
Lateral parabrachial nucleus central partipsiLPBC-0.5
Lateral parabrachial nucleus external partipsiLPBE-0.5
Gigantocellular reticular nucleusipsiGi3
Lateral reticular nucleusipsiLRt1
Lateral reticular nucleus magnocellular partipsiLRtMC2
Lateral reticular nucleus parvicellular partipsiLRtPC1
Lateral reticular nucleus subtrigeminal partipsiLRtS51
Spinal trigeminal nucleus interpolar part border regionipsiSp5Ib2
Spinal trigeminal nucleus interpolar part dorsolateralipsiSp5IdL2
Caudal ventrolateral spinal trigeminal nucleus interpolar partipsiSp5ICVL1
Nucleus of the solitary tractipsiSol2
Caudal ventrolateral medullaipsiCVLM1
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA20.5
Cuneate nucleusipsiCu-0.5
Retrotrapezoid nucleusipsiRTN1
HypothalamusipsiHYPO-0.5
Lateral hypothalamic areaipsiLH-0.5
Posterior hypothalamic areaipsiPHA-0.5
Paraventricular hypothalamic nucleusipsiPa0.5
Anteromedial thalamic nucleusipsiAM-3
Paracentral thalamic nucleusipsiPC-3
Rhomboid thalamic nucleusipsiRh-3
Submedius thalamic nucleusipsiSub2.5
Reuniens thalamic nucleusipsiRe-3
Reuniens thalamic nucleus ventral partipsiReV-3
Ventrolateral thalamic nucleusipsiVL-3
Ventrobasal complexipsiVB-3
Ventrobasal complex anterior partipsiVBa0.5
Ventromedial thalamic nucleusipsiVM-3
Posterior groupipsiPTG0.5
Ventral medial nucleus of the thalamusipsiVMT-3
Zona incertaipsiZI-0.5
Lateral funiculusipsilf-2
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Central amygdaloid nucleusipsiCe2
Central amygdaloid nucleus anterior partipsiCeAn-0.5
Basal gangliaipsiBG-0.5
Infralimbic cortexipsiIL-0.5
Orbital cortexipsiOrC0.5
Medial orbital cortexipsiMO-0.5
Ventrolateral funiculusipsivLF-2
Central graycontraCG-0.5
Nuclei of the lateral lemniscuscontraNLL1
Inferior colliculuscontraICOL3
Superior colliculuscontraSC3
Caudal one third of the superior colliculuscontracotSC-0.5
Tegmental areacontraTGA-0.5
Central tegmental field dorsal partcontraTGACd0
Laterodorsal tegmental nucleuscontraLDTg1
Dorsal tegmental nucleuscontraDTg0
Pedunculopontine tegmental nucleuscontraPPTg1
Ansiform lobule crus 1contraCrus11
Simple lobulecontraSim1
Paravermal region of anterior lobecontraPVAnL1
Mesencephalic reticular formationcontraMRF3
Cuneiforme nucleuscontraCnF-0.5
Parabrachial nucleuscontraPB-0.5
Lateral parabrachial nucleuscontraLPB0.5
Lateral reticular nucleuscontraLRt3
Lateral reticular nucleus magnocellular partcontraLRtMC3
Lateral reticular nucleus parvicellular partcontraLRtPC1
Lateral reticular nucleus subtrigeminal partcontraLRtS51
Spinal trigeminal nucleus caudal part dorsomedial partcontraSp5CDM2
Ventrolateral part of the spinal trigeminal nucleus caudal partcontraSp5CvL3
Nucleus of the solitary tractcontraSol3
Caudal ventrolateral medullacontraCVLM1
A1 noradrenergic cellscontraA13
A2 noradrenergic cellscontraA22
Retrotrapezoid nucleuscontraRTN0.5
HypothalamuscontraHYPO-0.5
Submedius thalamic nucleuscontraSub3
Ventrobasal complexcontraVB3
Ventrobasal complex anterior partcontraVBa3
Posterior groupcontraPTG3
Central amygdaloid nucleuscontraCe2.5
Orbital cortexcontraOrC0.5
Dorsal horn of spinal cordcontraDHMES1
Lamina 1 of dorsal horn of spinal cordcontrasDHMESL1-0.5
Lamina 2 of dorsal horn of spinal cordcontrasDHMESL2-0.5
Spinal cord layer 5 C1contraSCL5C1-0.5
Spinal cord layer 3 C1contraSCL3C1-0.5
Spinal cord layer 4 C1contraSCL4C1-0.5
Spinal cord layer 1 C1contraSCL1C1-0.5
Spinal cord layer 2 C1contraSCL2C11
Spinal cord layer 5 C2contraSCL5C2-0.5
Spinal cord layer 3 C2contraSCL3C2-0.5
Spinal cord layer 4 C2contraSCL4C2-0.5
Spinal cord layer 1 C2contraSCL1C2-0.5
Spinal cord layer 2 C2contraSCL2C21
Spinal cord layer 5 C3contraSCL5C3-0.5
Spinal cord layer 3 C3contraSCL3C3-0.5
Spinal cord layer 4 C3contraSCL4C3-0.5
Spinal cord layer 1 C3contraSCL1C3-0.5
Spinal cord layer 2 C3contraSCL2C31
Ventrolateral ophthalmic region of the cervical dorsal horncontraCSegDVLO3
Dorsomedial mandibular region of the cervical dorsal horncontraCSegDdm2
Maxillary region of the cervical dorsal horncontraCSegDMx1
Sternocleidomastoideus muscleipsiMuscSTc-0.5

Input from

NameSideAbbr.WeightDetails
Adventitia of the middle meningeal arteryipsimimea-0.5
Superficial temporal arteryipsista2
Middle cerebral arteryipsimcer-0.5
MesencephalonipsiMEC-0.5
Periaqueductal grayipsiPAG0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0
Red nucleusipsiR-0.5
Pedunculopontine tegmental nucleusipsiPPTg1
Cerebellar nucleiipsiDCeN-0.5
A5 noradrenaline cellsipsiA53
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC2
Mesencephalic reticular formationipsiMRF0.5
Deep mesencephalic nucleus medial partipsiDpMeM-0.5
Parabrachial nucleusipsiPB3
Koelliker Fuse nucleusipsiKF3
Lateral parabrachial nucleus crescent partipsiLPBCr1
Lateral parabrachial nucleus dorsal partipsiLPBD0.5
Lateral parabrachial nucleus external partipsiLPBE0.5
Lateral parabrachial nucleus ventral partipsiLPBV0.5
Caudal portion of the parabrachial nucleus central lateral partipsiPBCeLC1
Rostral portion of the parabrachial nucleus central lateral partipsiPBCeLR1
Parabrachial nucleus dorsal partipsiPBD-0.5
Parabrachial nucleus medialipsiPBnMe2
Medial parabrachial nucleus external partipsiMPBE0.5
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA2
Medullary reticular nucleusipsiMdD-0.5
Subnucleus reticularis dorsalisipsiSRD-0.5
Dorsal half of the subnucleus reticularis dorsalisipsiSRDDh-0.5
Dorsomedial part of the subnucleus reticularis dorsalisipsiSRDm-0.5
Medial medullary reticular nucleusipsiMMdD1
Subcoeruleus nucleusipsiSubC3
MyelencephalonipsiMYC-0.5
Mesencephalic trigeminal nucleusipsiMe51
Spinal trigeminal nucleus interpolar part ventromedial partipsiSp5IVM-0.5
Spinal trigeminal nucleus oral part ventromedial partipsiSp5OVM-0.5
Spinal trigeminal nucleus ventromedial portionipsiSp5ncvm-0.5
Trigeminal subnucleus caudalisipsi5SSC2.5
Trigeminal ganglionipsi5Gn3
Mandibular region of the trigeminal ganglionipsi5GnMa4
Mandibular region of the trigeminal ganglion at the level of the entry of the mandibular nerveipsi5GnMaEm3
Caudal area of the ophthalmomaxillary region of the trigeminal ganglionipsi5GnCOM3
Rostral area of the ophthalmomaxillary region of the trigeminal ganglionipsi5GnROM3
Superficial part of the trigeminal ganglionipsi5GnS3
Medial vestibular nucleusipsiMVe-0.5
Medial vestibular nucleus caudal partipsiMVeP-0.5
Medial vestibular nucleus rostral partipsiMVeR1
Lateral vestibular nucleusipsiLVe3
Nucleus of the solitary tract commissural partipsiSolC-0.5
Raphe nucleiipsiRAN3
Raphe magnus nucleusipsiRMg3
Raphe magnus nucleus rostral partipsiRMgR-2
Raphe obscurus nucleusipsiROb3
Raphe pallidus nucleusipsiRPa3
Cuneate nucleusipsiCu-0.5
Lateral paragigantocellular nucleusipsiLPGi2
Rostral ventral medulla oblongataipsiRVMeO3
HypothalamusipsiHYPO-0.5
Lateral hypothalamic areaipsiLH1
Paraventricular hypothalamic nucleusipsiPa-0.5
A11 dopamine cellsipsiA111
Parafascicular thalamic nucleusipsiPF-0.5
Parafascicular thalamic nucleus prerubral partipsiPFPR1
Lateral group of the dorsal thalamusipsiLAT-0.5
Posterior thalamic nuclear groupipsiPo-0.5
Midline group of the dorsal thalamusipsiMTN-0.5
Paratenial thalamic nucleusipsiPT-0.5
Amygdaloid complexipsiAC-0.5
Cervical spinal cord layer 10ipsiCSegL10-0.5
Cervical spinal cord layer 3ipsiCSegL30
Cervical spinal cord layer 4ipsiCSegL4-0.5
Cervical spinal cord layer 5ipsiCSegL5-0.5
Cervical spinal cord layer 7ipsiCSegL7-0.5
Cervical spinal cord layer 8ipsiCSegL8-0.5
Cervical spinal cord layer 1ipsiCSegL10
Cervical spinal cord layer 2ipsiCSegL20
Thoracal segments layer 1ipsiTSegL10
Thoracal segments layer 2ipsiTSegL20
Thoracal segments layer 3ipsiTSegL30
Thoracal segments layer 4ipsiTSegL4-0.5
Thoracal segments layer 5ipsiTSegL5-0.5
Thoracal segments layer 7ipsiTSegL7-0.5
Thoracal segments layer 8ipsiTSegL8-0.5
Thoracal segments layer 10ipsiTSegL10-0.5
Lumbar segments layer 1ipsiLSegL10
Lumbar segments layer 2ipsiLSegL20
Lumbar segments layer 3ipsiLSegL30
Lumbar segments layer 4ipsiLSegL4-0.5
Lumbar segments layer 5ipsiLSegL5-0.5
Lumbar segments layer 7ipsiLSegL7-0.5
Lumbar segments layer 8ipsiLSegL8-0.5
Lumbar segments layer 10ipsiLSegL10-0.5
Sacral segments layer 1ipsiSSegL10
Sacral segments layer 2ipsiSSegL20
Sacral segments layer 3ipsiSSegL30
Sacral segments layer 4ipsiSSegL4-0.5
Sacral segments layer 5ipsiSSegL5-0.5
Sacral segments layer 7ipsiSSegL7-0.5
Sacral segments layer 8ipsiSSegL8-0.5
Sacral segments layer 10ipsiSSegL10-0.5
Paralemniscal nucleuscontraPL-0.5
Periaqueductal graycontraPAG0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0.5
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0.5
Caudal one third of the superior colliculuscontracotSC-0.5
Pedunculopontine tegmental nucleuscontraPPTg1
A5 noradrenaline cellscontraA52
A7 noradrenaline cellscontraA72
Locus coeruleuscontraLC1
Mesencephalic reticular formationcontraMRF0.5
Parabrachial nucleuscontraPB2
Koelliker Fuse nucleuscontraKF4
Lateral parabrachial nucleus crescent partcontraLPBCr1
Lateral parabrachial nucleus dorsal partcontraLPBD0.5
Lateral parabrachial nucleus external partcontraLPBE0.5
Lateral parabrachial nucleus ventral partcontraLPBV0.5
Caudal portion of the parabrachial nucleus central lateral partcontraPBCeLC0.5
Rostral portion of the parabrachial nucleus central lateral partcontraPBCeLR0.5
Parabrachial nucleus medialcontraPBnMe2
Medial parabrachial nucleus external partcontraMPBE0.5
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus alpha partcontraGiA0.5
Medial medullary reticular nucleuscontraMMdD1
Subcoeruleus nucleuscontraSubC2
Mesencephalic trigeminal nucleuscontraMe50.5
Spinal trigeminal nucleus caudal partcontraSp5C-0.5
Trigeminal ganglioncontra5Gn3
Mandibular region of the trigeminal ganglioncontra5GnMa2
Mandibular region of the trigeminal ganglion at the level of the entry of the mandibular nervecontra5GnMaEm3
Ventrolateral part of the mandibular region of the trigeminal ganglioncontra5GnMaVL1
Ophthalmomaxillary region of the trigeminal ganglioncontra5GnOM-0.5
Caudal area of the ophthalmomaxillary region of the trigeminal ganglioncontra5GnCOM3
Rostral area of the ophthalmomaxillary region of the trigeminal ganglioncontra5GnROM3
Superficial part of the trigeminal ganglioncontra5GnS3
Trigeminal ganglion dorsomedial partcontra5Gndm-0.5
Medial vestibular nucleus caudal partcontraMVeP-0.5
Medial vestibular nucleus rostral partcontraMVeR-0.5
Lateral vestibular nucleuscontraLVe2
Raphe nucleicontraRAN3
Lateral paragigantocellular nucleuscontraLPGi1
A11 dopamine cellscontraA110.5
Parafascicular thalamic nucleus prerubral partcontraPFPR0.5
Parietal association cortex layer 5contraParPLa52
Insular cortex layer 5contraICXL52
Perirhinal cortex layer 5contraA35L51
Lateral agranular prefrontal cortex layer 5contraAGlL53
Primary somatosensory cortex barrel fieldcontraS1BF-0.5
Lamina 1 of dorsal horn of spinal cordcontrasDHMESL1-0.5
Lamina 2 of dorsal horn of spinal cordcontrasDHMESL2-0.5
Lamina 4 of dorsal horn of spinal cordcontraDHMESL43
Lamina 3 of the dorsal horn of spinal cordcontraDHMESL33
Cervical dorsal horncontraCSegD-0.5
Cervical spinal cord layer 3contraCSegL30
Cervical spinal cord layer 4contraCSegL4-0.5
Cervical spinal cord layer 5contraCSegL5-0.5
Cervical spinal cord layer 6contraCSegL63
Cervical spinal cord layer 7contraCSegL7-0.5
Cervical spinal cord layer 8contraCSegL8-0.5
Cervical spinal cord layer 10contraCSegL10-0.5
Cervical spinal cord layer 1contraCSegL10
Cervical spinal cord layer 2contraCSegL20
Thoracal segments layer 1contraTSegL10
Thoracal segments layer 2contraTSegL20
Thoracal segments layer 3contraTSegL30
Thoracal segments layer 4contraTSegL4-0.5
Thoracal segments layer 5contraTSegL5-0.5
Thoracal segments layer 7contraTSegL7-0.5
Thoracal segments layer 8contraTSegL8-0.5
Thoracal segments layer 10contraTSegL10-0.5
Lumbar segments layer 1contraLSegL10
Lumbar segments layer 2contraLSegL20
Lumbar segments layer 3contraLSegL30
Lumbar segments layer 4contraLSegL4-0.5
Lumbar segments layer 5contraLSegL5-0.5
Lumbar segments layer 7contraLSegL7-0.5
Lumbar segments layer 8contraLSegL8-0.5
Lumbar segments layer 10contraLSegL10-0.5
Sacral segments layer 1contraSSegL10
Sacral segments layer 2contraSSegL20
Sacral segments layer 3contraSSegL30
Sacral segments layer 4contraSSegL4-0.5
Sacral segments layer 5contraSSegL5-0.5
Sacral segments layer 7contraSSegL7-0.5
Sacral segments layer 8contraSSegL8-0.5
Sacral segments layer 10contraSSegL10-0.5
Chorda tympaniipsi7fnChoTy1
Frontal nerveipsiFroN-0.5
Inferior alveolar nerveipsiialv3
Auriculotemporal nerveipsi5V3Aute3
Lingual nerveipsi5V3Li0
Mylohyoid nerveipsimyhy1
Auricolotemporal nerveipsiautemp3
Lingual nervecontra5V3Li0
Auriculotemporal nervecontra5V3Aute0
Mylohyoid nervecontramyhy0
Inferior alveolar nervecontraialv1
Supraorbital nervecontrasuon3
Auricolotemporal nervecontraautemp0
EyelidipsiOrgsEL-0.5
Fascial vibrissal follicle complexesipsiFVFC-0.5
Supraorbital whiskersipsiSuOrW-0.5
Vibrissal follicle complex A1ipsiVFCA10
Vibrissal follicle complex A4ipsiVFCA4-2
Vibrissal follicle row BipsiVFCrB0.5
Vibrissal follicle row CipsiVFCrC0.5
Vibrissal follicle complex C1ipsiVFCC1-0.5
Vibrissal follicle row DipsiVFCrD0.5
Vibrissal follicle complex D1ipsiVFCD1-0.5
Vibrissal follicle complex D4ipsiVFCD4-0.5
Vibrissal follicle row D nociceptive primary afferentipsiVFCrDn-0.5
Vibrissal follicle row EipsiVFCrE0.5
Vibrissal follicle complex E1ipsiVFCE1-0.5
Vibrissal follicle complex slowly adapting type 1 primary afferentsipsiVFCsa-0.5
Mandibular auriculotemporal vibrissaipsiFVFCmat-0.5
Auriculotemporal vibrissaipsiFVFCaut-0.5
Auriculotemporal vibrissa slowly adapting 2a primary afferentsipsiFVFCautsa2a-0.5
Upper lip hairipsiFVFCuLh-0.5
Eyelid hairipsiFVFCeLh-0.5
Postero orbital sinus hairipsiposh3
Postero orbital sinus haircontraposh3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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