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Rat connectome



Secondary visual cortex lateral area layer 5 right


Abbreviation
V2LL5
Color       
Superior regionsSecondary visual cortex lateral area infragranular layers

SynonymsAbbr.Language
Secondary visual cortex lateral area layer 5V2LL5 

SubregionsSide
Secondary visual cortex lateral area layer 5aright
Secondary visual cortex lateral area layer 5cright
Secondary visual cortex lateral area layer 5bright
Secondary visual cortex lateral area layer 5 pyramidal cellsright
Secondary visual cortex lateral area layer 5 non-pyramidal cellsright

Output to

NameSideAbbr.WeightDetails
Superior colliculus superficial layerscontraSCs0
Pontine nucleicontraPn1
Rostral part of dorsal anterior cingulate cortexcontraDACCR1
Rostrocaudal extent of the dorsal anterior cingulate cortex superficial layerscontraDACCrcsL1
Frontal cortex area 1 superficial layerscontraFr1sL1
Frontal cortex area 2 rostral partcontraFr2R2
Frontal cortex area 2 rostrocaudal extent superficial layerscontraFr2rcsL1.5
Parietal cortex posterior area dorsal partcontraParPD-0.5
Ventral prefrontal cortex superficial layerscontraVPFCsL1.5
Area 17 area 18a border regioncontraVR1B2a3
Primary visual cortexcontraV12
Primary visual cortex layer 1contraV1L11
Primary visual cortex layer 2contraV1L21
Primary visual cortex layer 3contraV1L31
Primary visual cortex layer 4contraV1L41
Primary visual cortex deep layerscontraV1dL1
Primary visual cortex layer 5contraV1L51
Secondary visual cortex lateral areacontraV2L4
Secondary visual cortex lateral area supragranular layerscontraV2LsgL1
Ventral part of the lateral orbital cortex superficial layers layerscontraVeLOsL1.5
Ventral part of the ventrolateral orbital area superficial layerscontraVVLOsL1.5
Superior colliculusipsiSC2.5
Superior colliculus superficial layersipsiSCs3
Superior colliculus medial partipsimSC3
Supericial layers of the rostromedial superior colliculusipsiSCsRML-0.5
Tegmental areaipsiTGA0
Reticulotegmental nucleusipsiRETn0
Pontine nucleiipsiPn1
Deep mesencephalic nucleus intermediateipsiDpMei1
Deep mesencephalic nucleus lateral partipsiDpMeL1
Deep mesencephalic nucleus medial partipsiDpMeM1
Anterior group of the dorsal thalamusipsiATN3
Ventrolateral thalamic nucleusipsiVL3
Ventrobasal complexipsiVB3
Ventrobasal complex posterior partipsiVBp3
Lateral posterior thalamic nucleusipsiLP3
Corpus callosumipsicc-2
Dorsal region of caudal two thirds of the striatumipsiCPuDctt3
Rostral part of dorsal anterior cingulate cortexipsiDACCR2
Rostrocaudal extent of the dorsal anterior cingulate cortex superficial layersipsiDACCrcsL2
Frontal association cortexipsiFrA-0.5
Frontal cortex area 1 superficial layersipsiFr1sL1.5
Frontal cortex area 2 rostral partipsiFr2R4
Frontal cortex area 2 rostrocaudal extent superficial layersipsiFr2rcsL3
Parietal cortex posterior area dorsal partipsiParPD1
Temporal association area 2 dorsal partipsiTe2D-0.5
Perirhinal cortexipsiA353
Posterior part of the medial agranular prefrontal cortexipsiPoAGm3
Ventral prefrontal cortex superficial layersipsiVPFCsL3
Area 17 area 18a border regionipsiVR1B2a2
Primary visual cortexipsiV13
Primary visual cortex layer 1ipsiV1L12
Primary visual cortex layer 2ipsiV1L22
Primary visual cortex layer 3ipsiV1L32
Primary visual cortex layer 4ipsiV1L42
Primary visual cortex layer 5ipsiV1L52
Secondary visual cortexipsiV2-0.5
Secondary visual cortex medial area supragranular layersipsiV2MsgL2
Secondary visual cortex medial area deep gray matter layersipsiV2MdL1
Secondary visual cortex lateral area supragranular layersipsiV2LsgL1
Secondary visual cortex lateral area infragranular layersipsiV2LigL1
Ventral part of the lateral orbital cortex superficial layers layersipsiVeLOsL3
Ventral part of the ventrolateral orbital area superficial layersipsiVVLOsL3
Dorsal geniculate nucleus lateral partipsiDLGl3
Lateral geniculate complexipsiLG3
Ventral lateral geniculate nucleusipsiVLG3
Medial geniculate nucleusipsiMG3
Pyramidal tractipsipy0

Input from

NameSideAbbr.WeightDetails
Area 17 area 18a border regioncontraVR1B2a3
Primary visual cortex lateral partcontraV1La-0.5
Basal forebrainipsiBAF3
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Genu of diagonal band of BrocaipsiGDBB2
Subpallidal substantia innominataipsiSIsp2
Magnocellular preoptic nucleus lateral partipsiMCPOL2
Anteromedial thalamic nucleus rostral partipsiAMr1
Interoanteromedial thalamic nucleusipsiIAM1
Lateral posterior thalamic nucleusipsiLP-0.5
ClaustrumipsiCl3
Globus pallidusipsiGP2
Posterior part of the medial agranular prefrontal cortexipsiPoAGm3
Primary visual cortexipsiV1-1
Primary visual cortex deeper half of layers 2 3ipsiV1L23d-0.5
Primary visual cortex layer 1ipsiV1L11.5
Primary visual cortex layer 5 aipsiV1L5a1.5
Primary visual cortex white matteripsiV1WM3
Secondary visual cortex medial areaipsiV2M-1
Secondary visual cortex lateral areaipsiV2L2
Ventrolateral orbital areaipsiVLO0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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