University of Rostock

Department of Anatomy

Neuroscience Group

 Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Primary visual cortex layer 2 left


Abbreviation
V1L2
Color       
Superior regionsPrimary visual cortex superficial layers

SynonymsAbbr.Language
Primary visual cortex layer 2V1L2 

SubregionsSide
Primary visual cortex layer 2 cell populationsleft

Output to

NameSideAbbr.WeightDetails
Area 29ipsiA29-0.5
Parietal cortex posterior areaipsiParP3
Parietal cortex posterior area dorsal partipsiParPD2
Temporal cortexipsiTE2
Area 17 area 18 border regionipsiVR1B23
Area 17 area 18a border regionipsiVR1B2a3
Primary visual cortexipsiV12
Anterior part of the primary visual cortexipsiV1a3
Mediolateral part of the primary visual cortexipsiV1mL3
Primary visual cortex superficial layersipsiV1sL3
Primary visual cortex layer 1ipsiV1L13
Primary visual cortex layer 2ipsiV1L23
Primary visual cortex deeper half of layers 2 3ipsiV1L23d3
Primary visual cortex layer 3ipsiV1L33
Primary visual cortex layer 4ipsiV1L43
Primary visual cortex deep layersipsiV1dL3
Primary visual cortex layer 5ipsiV1L53
Middle layer of primary visual cortexipsiV1L5m1
Top layer 5 of the primary visual cortexipsiV1L5aT3
Bottom layer of primary visual cortexipsiV1L5bB3
Primary visual cortex layer 6ipsiV1L62.5
Middle layer of primary visual cortex layer 6ipsiV1L6m1
Primary visual cortex layer 6 lower partipsiV1L6L3
Primary visual cortex layer 6 upper partipsiV1L6u3
Primary visual cortex superficial layer 2 3ipsiV1L23s3
Rim region surrounding V1ipsiVRrim-0.5
Secondary visual cortexipsiV2-0.5
Secondary visual cortex medial areaipsiV2M3
Secondary visual cortex medial area supragranular layersipsiV2MsgL1
Secondary visual cortex medial area layer 3ipsiV2ML31
Secondary visual cortex medial area layer 2ipsiV2ML21
Secondary visual cortex medial area deep gray matter layersipsiV2MdL0.5
Secondary visual cortex lateral areaipsiV2L3
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 1ipsiLMV2LL11
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 2ipsiLMV2LL23
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 3ipsiLMV2LL33
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 4ipsiLMV2LL43
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 5ipsiLMV2LL51
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 6ipsiLMV2LL61
Secondary visual cortex lateral area infragranular layersipsiV2LigL1.5
Anterolateral extrastriate cortexipsiALExCx3
Posterior lateral extrastriate cortexipsiVISPX3
Lateromedial part of the lateral extrastriate cortex layer 5ipsiVISLLML51
Lateromedial part of the lateral extrastriate cortex layer 6ipsiVISLLML61
Lateromedial part of the lateral extrastriate cortex layer 3ipsiVISLLML33
Lateromedial part of the lateral extrastriate cortex layer 4ipsiVISLLML43
Lateromedial part of the lateral extrastriate cortex layer 1ipsiVISLLML11
Lateromedial part of the lateral extrastriate cortex layer 2ipsiVISLLML23
Lateromedial extrastriate cortexipsiLMExCx3
Posterior extrastriate cortexipsiPExCx3
Temporal cortexcontraTE1
Visual regionscontraVR3
Area 17 area 18a border regioncontraVR1B2a3
Primary visual cortexcontraV13
Primary visual cortex superficial layerscontraV1sL3
Primary visual cortex layer 1contraV1L11
Primary visual cortex layer 2contraV1L21
Primary visual cortex layer 3contraV1L31
Primary visual cortex layer 4contraV1L41
Primary visual cortex deep layerscontraV1dL3
Primary visual cortex layer 5contraV1L53
Primary visual cortex layer 6contraV1L63
Secondary visual cortexcontraV23
Secondary visual cortex medial areacontraV2M3
Secondary visual cortex medial area supragranular layerscontraV2MsgL0
Secondary visual cortex medial area layer 3contraV2ML30
Secondary visual cortex medial area layer 2contraV2ML20
Secondary visual cortex medial area deep gray matter layerscontraV2MdL0.5
Secondary visual cortex lateral areacontraV2L3
Secondary visual cortex lateral area infragranular layerscontraV2LigL1

Input from

NameSideAbbr.WeightDetails
Superior colliculusipsiSC2
Dorsal part of the lateral geniculate complexipsiLGd2
Centrolateral thalamic nucleus dorsal partipsiCLD1.5
Lateral posterior thalamic nucleusipsiLP2
Lateral entorhinal cortexipsiLEnt1.5
Retrosplenial agranular cortex layer 2ipsiRSAL21
Retrosplenial agranular cortex layer 3ipsiRSAL31
Frontal cortex area 1 layer 5bipsiFr1L5b0.5
Frontal cortex area 1 layer 6ipsiFr1L60.5
Frontal cortex area 1 layer 2ipsiFr1L20.5
Frontal cortex area 1 layer 3ipsiFr1L30.5
Frontal cortex area 2ipsiFr22
Frontal cortex area 2 layer 3ipsiFr2L31
Frontal cortex area 2 layer 2ipsiFr2L21
Frontal cortex area 2 layer 5cipsiFr2L5c1
Frontal cortex area 2 layer 6ipsiFr2L61
Temporal association area 2 dorsal partipsiTe2D1
Temporal association cortex 1 layer 3ipsiTeAL31
Temporal association cortex 1 layer 2ipsiTeAL21
Primary visual cortexipsiV1-0.5
Primary visual cortex layer 2ipsiV1L23
Primary visual cortex layer 3ipsiV1L33
Primary visual cortex layer 4ipsiV1L4-0.5
Primary visual cortex layer 5ipsiV1L52
Primary visual cortex layer 6ipsiV1L63
Secondary visual cortex medial areaipsiV2M3
Secondary visual cortex medial area layer 4ipsiV2ML40
Secondary visual cortex medial area layer 3ipsiV2ML33
Secondary visual cortex medial area layer 2ipsiV2ML23
Secondary visual cortex medial area layer 5ipsiV2ML52
Secondary visual cortex medial area layer 6ipsiV2ML61.5
Secondary visual cortex medial area medial partipsiV2MMe-0.5
Secondary visual cortex lateral areaipsiV2L3
Anterolateral area of subdivision 18a in lateral extrastriate cortexipsiALV2L-0.5
Lateromedial area of subdivision 18a in lateral extrastriate cortexipsiLMV2L-0.5
Secondary visual cortex lateral area layer 4ipsiV2LL40
Secondary visual cortex lateral area layer 2ipsiV2LL23
Secondary visual cortex lateral area layer 3ipsiV2LL33
Secondary visual cortex lateral area layer 5ipsiV2LL52
Secondary visual cortex lateral area layer 6ipsiV2LL61.5
Far lateral extrastriate cortexipsiVISFL3
Lateromedial part of the lateral extrastriate cortexipsiVISLLM3
Lateromedial extrastriate cortexipsiLMExCx1.5
Lateromedial extrastriate cortex layer 4ipsiLMExCxL43
Posterior part of the medial extrastriate cortexipsiVISMP1
Ventral orbital cortexipsiVO2
Ventrolateral orbital areaipsiVLO2
Lateral geniculate complexipsiLG2
Area 17 area 18a border regioncontraVR1B2a3
Primary visual cortexcontraV13
Primary visual cortex layer 2contraV1L21
Primary visual cortex layer 3contraV1L31
Primary visual cortex layer 5contraV1L51
Primary visual cortex layer 6contraV1L61
Secondary visual cortex lateral areacontraV2L-0.5
Secondary visual cortex lateral area layer 2contraV2LL23
Secondary visual cortex lateral area layer 3contraV2LL33
Secondary visual cortex lateral area layer 5contraV2LL51
Secondary visual cortex lateral area layer 6contraV2LL61.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications