University of Rostock

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Rat connectome



Trigeminal nucleus left


Abbreviation
5
Color       
Superior regionsNuclei of the trigeminal complex

SynonymsAbbr.Language
Trigeminal nucleus5Eng
Trigeminal brainstem nuclear complex  
Trigeminal nuclei Eng

SubregionsSide
Area around the motor nucleus of the trigeminal nerveleft
Around mesencephalic trigeminal nucleusleft
Mesencephalic trigeminal nucleusleft
Motor trigeminal nucleusleft
Rostrocaudal components of the trigeminal nucleusleft
Trigeminal sensory nuclear complexleft
Extratrigeminal region of S1left
Ventrolateral to the trigeminal motor nucleusleft
Subnucleus reticularis of the trigeminal nucleusleft
Trigeminal nucleus principal cellleft
Paramarginal trigeminal nucleusleft

Output to

NameSideAbbr.WeightDetails
Ventral midbrain tegmentumipsiVeMT-0.5
Cerebellar hemisphereipsiCEREBH-0.5
Lateral portion of crus 1ipsiLCrus10
Cerebellar lobule 2a zone BipsiCERL2aB0
Cerebellar lobule 2a zone C1ipsiCERL2aC10
Cerebellar lobule 2b zone BipsiCERL2bB0
Cerebellar lobule 2b zone C1ipsiCERL2bC10
Cerebellar lobule 3a zone BipsiCERL3aB0
Cerebellar lobule 3a zone C1ipsiCERL3aC10
Cerebellar lobule 3b zone BipsiCERL3bB0
Cerebellar lobule 3b zone C1ipsiCERL3bC10
Cerebellar lobule 1 zone BipsiCERL1B0
Cerebellar lobule 1 zone C1ipsiCERL1C10
Cerebellar lobule 4 zone BipsiCERL4B0
Cerebellar lobule 4 zone C1ipsiCERL4C10
Cerebellar lobule 5 zone BipsiCERL5B0
Cerebellar lobule 5 zone C1ipsiCERL5C10
Cerebellar lobule 7a zone AipsiCERL7aA-0.5
Cerebellar lobule 7a zone BipsiCERL7aB0
Cerebellar lobule 7a zone C1ipsiCERL7aC10
Cerebellar lobule 7b zone AipsiCERL7bA-0.5
Cerebellar lobule 7b zone BipsiCERL7bB0
Cerebellar lobule 7b zone C1ipsiCERL7bC10
Cerebellar lobule 8 zone BipsiCERL8B0
Cerebellar lobule 8 zone C1ipsiCERL8C10
Cerebellar lobule 9ipsiCERL90
Cerebellar lobule 9a zone BipsiCERL9aB0
Cerebellar lobule 9a zone C1ipsiCERL9aC1-0.5
Cerebellar lobule 9a zone C2ipsiCERL9aC2-0.5
Cerebellar lobule 9a zone C3ipsiCERL9aC3-0.5
Cerebellar lobule 9a zone XipsiCERL9aX-0.5
Cerebellar lobule 9b zone AipsiCERL9bA-0.5
Cerebellar lobule 9b zone BipsiCERL9bB0
Cerebellar lobule 9b zone C1ipsiCERL9bC1-0.5
Cerebellar lobule 9b zone C2ipsiCERL9bC2-0.5
Cerebellar lobule 9b zone C3ipsiCERL9bC3-0.5
Cerebellar lobule 9b zone XipsiCERL9bX-0.5
Cerebellar lobule 9c zone AipsiCERL9cA-0.5
Cerebellar lobule 9c zone BipsiCERL9cB0
Cerebellar lobule 9c zone C1ipsiCERL9cC1-0.5
Cerebellar lobule 9c zone C2ipsiCERL9cC2-0.5
Cerebellar lobule 9c zone C3ipsiCERL9cC3-0.5
Cerebellar lobule 9c zone XipsiCERL9cX-0.5
Cerebellar lobule 10ipsiCERL100
Cerebellar lobule 10b zone BipsiCERL10bB0
Cerebellar lobule 10b zone C1ipsiCERL10bC1-0.5
Cerebellar lobule 10b zone C2ipsiCERL10bC2-0.5
Cerebellar lobule 10b zone C3ipsiCERL10bC3-0.5
Cerebellar lobule 10b zone XipsiCERL10bX-0.5
Cerebellar lobule 10a zone BipsiCERL10aB0
Cerebellar lobule 10a zone C1ipsiCERL10aC1-0.5
Cerebellar lobule 10a zone C2ipsiCERL10aC2-0.5
Cerebellar lobule 10a zone C3ipsiCERL10aC3-0.5
Cerebellar lobule 10a zone XipsiCERL10aX-0.5
Cerebellar lobule 6a zone AipsiCERL6aA-0.5
Cerebellar lobule 6a zone BipsiCERL6aB0
Cerebellar lobule 6a zone C1ipsiCERL6aC10
Cerebellar lobule 6b zone AipsiCERL6bA-0.5
Cerebellar lobule 6b zone BipsiCERL6bB0
Cerebellar lobule 6b zone C1ipsiCERL6bC10
Cerebellar lobule 6c zone AipsiCERL6cA-0.5
Cerebellar lobule 6c zone BipsiCERL6cB0
Cerebellar lobule 6c zone C1ipsiCERL6cC10
Cerebellar lobule 6d zone AipsiCERL6dA-0.5
Cerebellar lobule 6d zone BipsiCERL6dB0
Cerebellar lobule 6d zone C1ipsiCERL6dC10
Dorsolateral humpipsiCERcndl-0.5
Interposed cerebellar nucleiipsiICN0
Lateral cerebellar nucleus parvicellular partipsiLatPC-0.5
Lateral cerebellar nucleus dorsolateral magnocellular portionipsiCERLdl-0.5
Koelliker Fuse nucleusipsiKF-0.5
Medial parabrachial nucleus external partipsiMPBE-0.5
Lateral part of the medial parabrachial nucleus external partipsiMPBEL-0.5
Apneic region of the intertrigeminal nucleusipsiI5ap-0.5
Cochlear nucleusipsiCON-0.5
Dorsal cochlear nucleusipsiDC-0.5
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract dorsal partipsiSolD1
Nucleus of the solitary tract dorsomedial partipsiSolDM-2
Nucleus of the solitary tract gelatinous partipsiSolG1
Nucleus of the solitary tract medial partipsiSolM-0.5
Nucleus of the solitary tract medial part lateral zoneipsiSolML3
Inferior oliveipsiIO-0.5
Rostral ventral respiratory groupipsiRVRG1
Oval paracentral thalamic nucleusipsiOPC-0.5
Posteromedian thalamic nucleusipsiPoMn-0.5
Anterior pretectal nucleusipsiAPT-0.5
Anterior cingulate cortexipsiACC-0.5
Primary somatosensory cortex barrel fieldipsiS1BF0
Primary somatosensory cortex forelimb regionipsiS1FL0
Spinal cordipsiMES-0.5
Lumbosacral spinal cordipsiLSSC-0.5
Cerebellar lobule 9contraCERL90
Cerebellar lobule 10contraCERL100
Rostral ventral respiratory groupcontraRVRG1
Anterior pretectal nucleuscontraAPT3
Anterior cingulate cortexcontraACC-0.5
Primary somatosensory cortex barrel fieldcontraS1BF3
Primary somatosensory cortex forelimb regioncontraS1FL1
Pterygopalatine ganglionipsiAutoPpG-0.5
Mental nerveipsiment3
CoripsiOrgsCor-0.5

Input from

NameSideAbbr.WeightDetails
Edinger Westphal nucleusipsiEW-0.5
Intermediate reticular nucleusipsiIRt-0.5
Medial reticular formationipsiRFm1
Ventral reticular formationipsiVRF-0.5
Parabrachial nucleusipsiPB-0.5
Subnucleus reticularis dorsalisipsiSRD3
Medullary reticular nucleus dorsal partipsiMdDd1
Ventral medullary reticular formationipsiVMurF-0.5
Parvicellular reticular nucleusipsiPCRt-0.5
Supratrigeminal nucleusipsiSu5-0.5
Principal sensory trigeminal nucleusipsiPr5-0.5
Spinal trigeminal nucleusipsiSp5nc-0.5
Ophthalmic region of the trigeminal ganglionipsi5GnOP3
Nucleus of the solitary tractipsiSol-0.5
Raphe nucleiipsiRAN-0.5
Lateral paragigantocellular nucleusipsiLPGi1
Paragigantocellular reticular nucleus ventral partipsiPGiV-0.5
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Primary somatosensory cortex barrel field layer 5ipsiS1BF5-0.5
Intermediate reticular nucleuscontraIRt-0.5
Primary somatosensory cortexcontraS1-0.5
Mandibulary nerveipsi5V3-0.5
Vitreous humor of eyeipsiOrgVHEye-10

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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