University of Rostock

Department of Anatomy

Neuroscience Group

  Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Raphe nuclei left


Abbreviation
RAN
Color       
Superior regionsBrain stem premotor cell groups

SynonymsAbbr.Language
 RA 
Serotonergic nucleus Eng
Raphe region Eng
Medullary raphe nuclei  
Medullary raphe Eng
Midbrain raphe system Eng
Medulla raphe complex Eng
Midbrain raphe Eng
Raphe nucleiRANEng
Raphe nucleus  
Medullary raphe nucleus  

SubregionsSide
Around the raphe magnus nucleusleft
Caudal raphe nucleileft
Dorsal raphe nucleusleft
Linear nucleus of the rapheleft
Median raphe nucleusleft
Midline apneic siteleft
Midline raphe nucleileft
Nucleus raphe alatusleft
Paramedian raphe nucleusleft
Pontine raphe nucleusleft
Posterodorsal raphe nucleileft
Raphe ambiguusleft
Raphe dorsalislike neurons surrounding the medial longitudinal fasciculusleft
Raphe interpositus nucleusleft
Raphe magnus nucleusleft
Raphe nuclei rostral partleft
Raphe obscurus nucleusleft
Raphe pallidus nucleusleft
Ventral portion of the raphe nucleileft
Paramedial raphe nucleusleft
Serotonin cell groupleft
Pontomedullary raphe nucleileft
Lateral portion of the raphe complexleft
Periabducens rapheleft
Posterior raphe nucleusleft
Raphe nuclei rostro-caudal extentleft
Raphe parabrachial nucleusleft
Ventrolateral raphe nucleusleft
Isthmus region of the rapheleft

Output to

NameSideAbbr.WeightDetails
Lateroventral part of the central grayipsiCGLV-0.5
Periaqueductal grayipsiPAG-10
Lateral periaqueductal grayipsiLPAG-0.5
Inferior colliculusipsiICOL0
Superior colliculusipsiSC0
Tegmental areaipsiTGA0
Peduncularpontine nucleusipsiPPN0
Substantia nigra reticular partipsiSNR-0.5
Ventral tegmental area A10ipsiVTA3
Ventral medullary tegmentumipsiVMTGA3
Ventral tegmental nucleusipsiVTg1
Dorsal tegmental nucleusipsiDTg1
Dorsal tegmental nucleus ventromedial partipsiDTgVM1
Pontine wave generation siteipsiPWGS2
CerebellumipsiCERE-1
Paraflocculus ventral partipsiPFlv0.5
Cerebellar lobule 10 medial partipsiCERL10Me0.5
Intermediate part of nodulusipsiCERL10im0.5
FlocculusipsiFl0.5
Superior cerebellar peduncleipsisucep0
Locus coeruleusipsiLC3
Reticular systemipsiRF-1
Magnocellular reticular nucleus beta partipsiNRMCb-0.5
Rostroventrolateral reticular nucleusipsiRVL1
Pontine reticular nucleusipsiPRN-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Cuneiforme nucleusipsiCnF0
Parabrachial nucleusipsiPB0
Parabrachial nucleus medialipsiPBnMe-1
Gigantocellular reticular nucleusipsiGi0
Lateral reticular nucleusipsiLRt1
C1 adrenaline cellsipsiC13
C2 adrenaline cellsipsiC21
C3 adrenaline cellsipsiC31
Ambiguus nucleusipsiAmb-0.5
Facial nucleusipsi7-0.5
Hypoglossal nucleusipsi12S-0.5
Hypoglossal motor nucleusipsi12M-0.5
Dorsal subdivision of the hypoglossal motor nucleusipsi12Md-0.5
Ventral subdivision of the hypoglossal motor nucleusipsi12MV-0.5
Midline part of the hypoglossal nucleusipsi12SMM1
Hypoglossal nucleus ventral partipsi12SV-0.5
Hypoglossal nucleus rostral partipsi12Sr1
Caudal part of the hypoglossal nucleusipsi12SC1
Reticular formation immediatly surrounding the hypoglossal nucleusipsi12SRF-0.5
Trigeminal nucleusipsi5-0.5
Mesencephalic trigeminal nucleusipsiMe5-0.5
Motor trigeminal nucleusipsiMo51
Principal sensory trigeminal nucleusipsiPr52
Spinal trigeminal nucleusipsiSp5nc1
Spinal trigeminal nucleus caudal partipsiSp5C2
Spinal trigeminal nucleus interpolar partipsiSp5I2
Spinal trigeminal nucleus oral partipsiSp5O2
Spinal trigeminal nucleus ventral partipsiSp5ncV1
CochleaipsiCO-0.5
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract caudal partipsiSolca1
Nucleus of the solitary tract commissural partipsiSolC-0.5
Nucleus of the solitary tract caudal visceral sensory partipsiSolcacvs-0.5
Dorsal motor nucleus of vagusipsi10-0.5
Raphe nucleiipsiRAN1
Dorsal raphe nucleusipsiDR1
Raphe obscurus nucleus caudal partipsiRObc1
Raphe pallidus nucleusipsiRPa1
Ventral lateral medulla oblongataipsiMVL1
A1 noradrenergic cellsipsiA1-2
A2 noradrenergic cellsipsiA2-0.5
Dorsal ventral respiratory groupipsiDVReG-0.5
Dorsal column nucleiipsiDCN3
Cuneate nucleusipsiCu1
Paragigantocellular reticular nucleusipsiPGi-0.5
Rostral ventral respiratory groupipsiRVRG1
Ventral medulla oblongataipsiVMeO0
Basal forebrainipsiBAF-0.5
Diagonal band of BrocaipsiDBB2
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Nucleus of the vertical limb of the diagonal bandipsiVDB2
Medial septal nucleusipsiMS3
Substantia innominataipsiSI2
Lateral margin of the lreoptic nucleusipsiPREnLM-0.5
Tuberomammillary nucleusipsiTuM1
Tuberomammillary nucleus dorsomedial partipsiTBMdm-0.5
Ventral tuberomammillary nucleusipsiVTM-0.5
Glia limitans ventral to the ventral tuberomammillary nucleusipsiTuMgL-0.5
DiencephalonipsiDEC0
HypothalamusipsiHYPO1
Dorsomedial hypothalamic nucleusipsiDMHy-0.5
Dorsomedial hypothalamic nucleus non-compact partipsiDMHyncp1
Lateral hypothalamus adjacent to the ventral tuberomammillary nucleusipsiLHVTM-0.5
Anterior hypothalamic areaipsiAHA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Ventromedial hypothalamic nucleusipsiVMH1
Arcuate nucleusipsiArc-1
Arcuate nucleus anterodorsal portionipsiArcAD-1
Arcuate nucleus caudal halfipsiArcch-0.5
Paraventricular hypothalamic nucleusipsiPa2
Suprachiasmatic nucleusipsiSCh1
Supraoptic nucleus [Supraoptic region]ipsiSO2
Supraoptic nucleus dorsal partipsiSOd-0.5
Supraoptic nucleus ventral part [Supraoptic region]ipsiSOV-0.5
Mammillary bodyipsiCMAM-0.5
Lateral mammillary nucleusipsiLM-0.5
Premammillary nucleus dorsal partipsiPMD-0.5
Premammillary nucleus ventromedial partipsiPMvm-0.5
Supramammillar nucleusipsiSuM1
Supramammillar nucleus lateral partipsiSuML-0.5
Retrochiasmatic area rostral partipsiRChR-0.5
Anterodorsal thalamic nucleusipsiAD-0.5
Anteromedial thalamic nucleusipsiAM-0.5
Anteroventral thalamic nucleusipsiAV2
Central medial thalamic nucleusipsiCM2
Central medial thalamic nucleus lateral partipsiCMl2
Centrolateral thalamic nucleusipsiCL0.5
Centrolateral thalamic nucleus rostral partipsiCLr2
Paracentral thalamic nucleusipsiPC1
Rhomboid thalamic nucleusipsiRh-0.5
Posterior thalamic nuclear groupipsiPo0.5
Mediodorsal thalamic nucleusipsiMD2
Paratenial thalamic nucleusipsiPT-0.5
Paraventricular thalamic nucleusipsiPV-0.5
Reuniens thalamic nucleusipsiRe-0.5
Ventrolateral thalamic nucleusipsiVL0.5
Ventrolateral thalamic nucleus dorsal partipsiVLD2
Ventromedial thalamic nucleusipsiVM-0.5
Lateral posterior thalamic nucleusipsiLP0.5
Laterodorsal thalamic nucleusipsiLD0.5
Medial thalamic zoneipsiMTZ-0.5
Reticular thalamic nucleusipsiRt3
Zona incerta ventral partipsiZIV2
HabenulaipsiHAB3
Pineal glandipsiPi-0.5
Dorsolateral funiculusipsidlft-0.5
Medial forebrain bundleipsimfb-2
Cisterna cerebellomedullarisipsiCistcm-3
Amygdaloid complexipsiAC1
Basolateral amygdaloid nucleusipsiBL-3
Bed nucleus of the stria terminalisipsiBST-0.5
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV-0.5
Interstitial nucleus of the stria terminalisipsiBSTis-0.5
ClaustrumipsiCl1
Globus pallidusipsiGP-0.5
Peripallidal regionipsiPePa2
Subpallidal regionipsiSuPa2
Accumbens nucleusipsiAc-0.5
Accumbens nucleus shellipsiAcbSh1
Caudate putamenipsiCPu2
Subthalamic nucleusipsiSTh2
Cerebral cortexipsiCEC-0.5
HippocampusipsiHIPP2
Dorsal hippocampusipsiHIPPd-0.5
Dentate gyrusipsiDG-0.5
Dentate gyrus molecular layeripsiDGmL1
Inner molecular layer of the dentate gyrusipsiIMLDG1.5
Outer molecular layer of the dentate gyrusipsiOML1
Hilus of the dentate gyrusipsiHil3
Field CA1 of hippocampus stratum lacunosum-moleculareipsiCA1LM3
Field CA1 of hippocampus stratum lacunosum-moleculare superficial partipsiCA1sLM-0.5
Field CA1 of hippocampus layer stratum radiatumipsiCA1rad2
Field CA1 of hippocampus layer stratum oriensipsiCA1or1
Field CA2 of hippocampus stratum lacunosum-moleculareipsiCA2LM2
Field CA2 of hippocampus layer stratum radiatumipsiCA2rad2
Field CA3 of hippocampus stratum lacunosum-moleculareipsiCA3lm2
Field CA3 of hippocampus layer stratum radiatumipsiCA3rad2
Field CA3 of hippocampus layer stratum oriensipsiCA3or2
Molecular layer of the subiculumipsiSumo2
Hippocampus rostral partipsiHIPPRo-0.5
Pyramidal cell layer of the hippocampusipsiPy-2
Alveus of the hippocampusipsialv-2
Fornixipsif-2
ParasubiculumipsiPaS-0.5
Piriform cortexipsiPir-0.5
Area tempestasipsiAtemp-0.5
Midrostrocaudal part of the retrosplenial dysgranular cortexipsiRSdysmrc-0.5
Retrosplenial granular cortex a regionipsiRSGa-0.5
Cingulate cortexipsiCg3
Anterior cingulate cortex anterior partipsiACCa-1
Anterior cingulate cortex posterior partipsiACCp-1
Cingulumipsicg-2
Posterior cingulate cortex anterior partipsiPCCa-1
Posterior cingulate cortex posterior partipsiPCCp-1
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL1
Frontal association cortexipsiFrA-0.5
Granular insular cortexipsiGI-0.5
Prefrontal cortexipsiPFC0
Lateral agranular prefrontal cortexipsiAGl1
Medial prefrontal cortexipsimPFC1
Medial agranular prefrontal cortexipsiAGm1
Primary visual cortexipsiV10
Lateral orbital cortexipsiLO1
Ventral orbital cortexipsiVO1
Dorsal geniculate nucleus lateral partipsiDLGl0.5
Intergeniculate leafipsiIGL-0.5
Medial geniculate nucleusipsiMG1.5
Interpeduncular nucleusipsiIP2
Olfactory bulb A16ipsiMOB3
Olfactory cortexipsiOcx1
Granular cell layer of the olfactory bulbipsiOBgra0
Olfactory cortex plexiform layeripsiOcxLpx0
Olfactory tubercleipsiTuO1
Septal regionipsiSER1
Lateral septal nucleusipsiLS-0.5
Mid-lateral septumipsimiLS2
Septofimbrial nucleusipsiSFi3
Lateral ventricleipsiLV-0.5
Spinal cordipsiMES-0.5
Dorsoventral spinal cordipsiDVHMES3
Cervical segmentsipsiCSeg3
Cervical segment 1ipsiCS13
Intermediomedial cell column C1ipsiIMMC1-0.5
Dorsal horn C1ipsiDHC13
Ventral horn C1ipsiVHC13
Cervical segment 2ipsiCS23
Dorsal horn C2ipsiDHC23
Ventral horn C2ipsiVHC23
Cervical segment 3ipsiCS33
Dorsal horn C3ipsiDHC33
Ventral horn C3ipsiVHC33
Cervical segment 4ipsiCS43
Dorsal horn C4ipsiDHC43
Ventral horn C4ipsiVHC43
Phrenic motoneurons of lamina 9 C4ipsiPh9C41
Cervical segment 5ipsiCS52
Dorsal horn C5ipsiDHC53
Ventral horn C5ipsiVHC53
Cervical segment 6ipsiCS6-0.5
Dorsal horn C6ipsiDHC63
Ventral horn C6ipsiVHC63
Cervical segment 7ipsiCS7-0.5
Dorsal horn C7ipsiDHC73
Ventral horn C7ipsiVHC73
Cervical segment 8ipsiCS8-0.5
Dorsal horn C8ipsiDHC83
Ventral horn C8ipsiVHC83
Cervical enlargementipsiCSegE-0.5
Thoracal segmentsipsiTSeg3
Thoracal segment 1ipsiT1-0.5
Intermediolateral cell column T1ipsiIMLT13
Spinal cord layers T1ipsiSCLT1-0.5
Thoracal segment 2ipsiT2-0.5
Intermediolateral cell column T2ipsiIMLT23
Intermediolateral cell column pars spinalis T2ipsiIMLST23
Spinal cord layers T2ipsiSCLT2-0.5
Thoracal segment 3ipsiT3-0.5
Intermediolateral cell column T3ipsiIMLT33
Intermediolateral cell column pars spinalis T3ipsiIMLST3-0.5
Spinal cord layers T3ipsiSCLT3-0.5
Thoracal segment 4ipsiT4-0.5
Intermediolateral cell column T4ipsiIMLT43
Spinal cord layers T4ipsiSCLT4-0.5
Thoracal segment 5ipsiT5-0.5
Intermediolateral cell column T5ipsiIMLT53
Spinal cord layers T5ipsiSCLT5-0.5
Thoracal segment 6ipsiT6-0.5
Intermediolateral cell column T6ipsiIMLT6-0.5
Spinal cord layers T6ipsiSCLT6-0.5
Thoracal segment 7ipsiT7-0.5
Intermediolateral cell column T7ipsiIMLT7-0.5
Spinal cord layers T7ipsiSCLT7-0.5
Thoracal segment 8ipsiT8-0.5
Intermediolateral cell column T8ipsiIMLT8-0.5
Spinal cord layers T8ipsiSCLT8-0.5
Thoracal segment 9ipsiT9-0.5
Intermediolateral cell column T9ipsiIMLT9-0.5
Spinal cord layers T9ipsiSCLT9-0.5
Intermediolateral cell column T10ipsiIMLT10-0.5
Spinal cord layers T10ipsiSCLT10-0.5
Intermediolateral cell column T11ipsiIMLT11-0.5
Spinal cord layers T11ipsiSCLT11-0.5
Intermediolateral cell column T12ipsiIMLT12-0.5
Spinal cord layers T12ipsiSCLT12-0.5
Intermediolateral cell column T13ipsiIMLT13-0.5
Spinal cord layers T13ipsiSCLT13-0.5
Lumbosacral spinal cordipsiLSSC-0.5
Lumbar segmentsipsiLSeg3
Lumbar enlargementipsiLSegE3
Lumbar segment 1ipsiL13
Spinal cord layers L1ipsiSCLL13
Lumbar segment 2ipsiL23
Spinal cord layers L2ipsiSCLL23
Dorsal horn L2ipsiDHL23
Spinal cord layer 1 L2ipsiSCL1L2-0.5
Lumbar segment 3ipsiL33
Spinal cord layers L3ipsiSCLL33
Dorsal horn L3ipsiDHL33
Lumbar segment 4ipsiL43
Spinal cord layers L4ipsiSCLL43
Dorsal horn L4ipsiDHL43
Lumbar segment 5ipsiL53
Spinal cord layers L5ipsiSCLL53
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL52
Lumbar segment 6ipsiL63
Spinal cord layers L6ipsiSCLL63
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL62
Superior colliculuscontraSC0
Ventral tegmental nucleuscontraVTg1
Dorsal tegmental nucleuscontraDTg1
Paraflocculus ventral partcontraPFlv0.5
Cerebellar lobule 10 medial partcontraCERL10Me0.5
Intermediate part of noduluscontraCERL10im0.5
FlocculuscontraFl0.5
Rostroventrolateral reticular nucleuscontraRVL1
Gigantocellular reticular nucleuscontraGi-0.5
Midline part of the hypoglossal nucleuscontra12SMM-0.5
Hypoglossal nucleus rostral partcontra12Sr-0.5
Caudal part of the hypoglossal nucleuscontra12SC-0.5
Motor trigeminal nucleuscontraMo50.5
Raphe nucleicontraRAN1
Dorsal raphe nucleuscontraDR1
Substantia innominatacontraSI-0.5
Dorsomedial hypothalamic nucleus non-compact partcontraDMHyncp1
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-0.5
Supraoptic nucleus [Supraoptic region]contraSO0
Supraoptic nucleus dorsal partcontraSOd-0.5
Supraoptic nucleus ventral part [Supraoptic region]contraSOV-0.5
Anteroventral thalamic nucleuscontraAV1
Central medial thalamic nucleus lateral partcontraCMl1
Centrolateral thalamic nucleus rostral partcontraCLr1
Ventrolateral thalamic nucleus dorsal partcontraVLD1
Reticular thalamic nucleuscontraRt1
Caudate putamencontraCPu1
Olfactory bulb A16contraMOB1
Lateral septal nucleuscontraLS1
Cervical segment 1contraCS13
Dorsal horn C1contraDHC13
Ventral horn C1contraVHC13
Cervical segment 2contraCS23
Dorsal horn C2contraDHC23
Ventral horn C2contraVHC23
Cervical segment 3contraCS3-0.5
Dorsal horn C3contraDHC33
Ventral horn C3contraVHC33
Cervical segment 4contraCS4-0.5
Dorsal horn C4contraDHC43
Ventral horn C4contraVHC43
Cervical segment 5contraCS52
Dorsal horn C5contraDHC53
Ventral horn C5contraVHC53
Cervical segment 6contraCS6-0.5
Dorsal horn C6contraDHC63
Ventral horn C6contraVHC63
Cervical segment 7contraCS7-0.5
Dorsal horn C7contraDHC73
Ventral horn C7contraVHC73
Cervical segment 8contraCS8-0.5
Dorsal horn C8contraDHC83
Ventral horn C8contraVHC83
Intermediolateral cell column pars spinalis T2contraIMLST20.5
Lumbar segment 1contraL1-0.5
Lumbar segment 2contraL2-0.5
Lumbar segment 3contraL3-0.5
Lumbar segment 4contraL4-0.5
Lumbar segment 5contraL5-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5contraBCL52
Lumbar segment 6contraL6-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 6contraBCL62
Median nerveipsimen3
Sciatic nerveipsisci3
Ulnar nerveipsiuln3
Cervical oesophagusipsiOrgsOesC-0.5
Lower gingivaipsiOrgOCLg-10
Stomach ventral corpusipsiOrgsStomVC3
ColonipsiOrgsColonS3
Distal colonipsiOrgsColonDi-10
Liver sideipsiOrgsLivs-0.5
Lower lipipsiOrgLoLi-10
Tail skinipsiOrgBSTail-10
Tail brown adipose tussueipsiOrgBSTailb-10
Thyroid glandipsiOrgThyroid3
Interscapular brown fat tissueipsiOrgisBFT-10
DiaphragmaipsiMuscDia1
Bulbocavernosus muscleipsiMuscBCV-10
Ischiocavernosus muscleipsiMuscicav-10
Femoral bone marrowipsiOrgSkFemM2
Olfactory epitheliumipsiOLfEpi1.5
Retroperitoneal fatipsiOrgRetroF-0.5
Mammary glandipsiOrgMamG1
Subcutaneous nipple region of the mammary gland M1ipsiOrgsMamM11
Subcutaneous nipple region of the mammary gland M2ipsiOrgsMamM21
CervixipsiOrgUTC1
TestisipsiOrgTest-0.5
KidneyipsiOrgsKid1
Thyroid glandcontraOrgThyroid-0.5
DiaphragmacontraMuscDia0
Bulbocavernosus musclecontraMuscBCV-10
Ischiocavernosus musclecontraMuscicav-10
Femoral bone marrowcontraOrgSkFemM2
KidneycontraOrgsKid1

Input from

NameSideAbbr.WeightDetails
Central gray mesencephalic partipsiCGM-0.5
Nucleus of DarkschewitschipsiDk-0.5
Periaqueductal grayipsiPAG3
Dorsal periaqueductal grayipsiDPAG3
Dorsolateral periaqueductal grayipsiDLPAG3
Caudal part of the medial periaqueductal grayipsiPAGmc3
Ventral periaqueductal grayipsiVPAG1
Ventrolateral periaqueductal grayipsiVLPAG3
Ventrolateral periaqueductal gray rostral partipsiPAGvlr-0.5
Superior colliculus layersipsiSCLa-0.5
Superior colliculus superficial layersipsiSCs0.5
Superior colliculus intermediate layersipsiSCi3
Superior colliculus deep layersipsiSCd2
Substantia nigra A9ipsiSN1
Substantia nigra reticular partipsiSNR-0.5
Ventral tegmental area A10ipsiVTA-0.5
Ventral pontine tegmentumipsiVPTGA-0.5
Laterodorsal tegmental nucleusipsiLDTg3
Ventral tegmental nucleusipsiVTg0
Dorsal tegmental nucleusipsiDTg1
Tegmental area lateral to the ventral tegmental nucleusipsiTGAL1
Tegmental area ventral to the ventral tegmental nucleusipsiTGAV1
Rostral to the nucleus of DarkschewitschipsiRVMMM-0.5
Edinger Westphal nucleusipsiEW-0.5
Interstitial nucleus of CajalipsiInC-0.5
Locus coeruleusipsiLC1
Prepositus nucleusipsiPr-0.5
Mesencephalic reticular formationipsiMRF-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Koelliker Fuse nucleusipsiKF-0.5
Parabrachial nucleus medialipsiPBnMe-0.5
Gigantocellular reticular nucleusipsiGi-0.5
Gigantocellular reticular nucleus ventral partipsiGiV2
Caudal medullary reticular formationipsiCMdD0
Parvicellular reticular nucleusipsiPCRt-0.5
Supratrigeminal nucleusipsiSu5-0.5
Vestibular nucleiipsiVnc-0.5
Medial vestibular nucleusipsiMVe-0.5
Raphe nucleiipsiRAN1
Dorsal raphe nucleusipsiDR3
Raphe pallidus nucleusipsiRPa2
Inferior olive medial nucleusipsiIOM2
Rostral ventral respiratory groupipsiRVRG0.5
Diagonal band of BrocaipsiDBB2
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Substantia innominataipsiSI2
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA-0.5
Medial preoptic area periventricular partipsiMPApv1
Ventrolateral preoptic nucleusipsiVLPO-0.5
Dorsolateral preoptic regionipsiPREOdL-0.5
HypothalamusipsiHYPO-0.5
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx2
Anterior hypothalamic areaipsiAHA-0.5
Anterior hypothalamic area posterior partipsiAHAP0.5
Anterior hypothalamic nucleusipsiAHn-2
Anterior part of the anterior hypothalamic nucleusipsiAHna-2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Posterior hypothalamic areaipsiPHA-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Suprachiasmatic nucleusipsiSCh0
Supraoptic nucleus [Supraoptic region]ipsiSO-0.5
Lateral mammillary nucleusipsiLM-0.5
Posterior mammillay nucleusipsiPMAM-0.5
Premammillary nucleus dorsal partipsiPMD-0.5
Medial parts of the medial premammillary nucleusipsiPMMM-0.5
Premammillary nucleus ventral partipsiPMV-0.5
ThalamusipsiT0
Parafascicular thalamic nucleusipsiPF2
Parafascicular thalamic nucleus lateral partipsiPFL2
Parafascicular thalamic nucleus ventrolateral partipsiPFvl-0.5
Subfornical organipsiSFO-0.5
Zona incertaipsiZI-0.5
Nucleus of the fields of ForelipsiF-0.5
Zona incerta dorsal partipsiZID-0.5
Zona incerta ventral partipsiZIV-0.5
HabenulaipsiHAB3
Lateral habenular nucleusipsiLHb3
Medial habenular nucleusipsiMHb0
Pretectal regionipsiPRT-0.5
RetinaipsiRET-0.5
Medial forebrain bundleipsimfb-2
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM1
Anterior cortical amygdaloid nucleusipsiACo2
Medial globus pallidusipsiMGP1
Peripallidal regionipsiPePa1
Subpallidal regionipsiSuPa1
Ventral pallidumipsiVP1
Accumbens nucleusipsiAc0
Retrosplenial agranular cortexipsiRSA1
Cingulate cortexipsiCg3
Cingulate cortex area 1 caudal partipsiCg1c1
Cingulate cortex area 2 caudal partipsiCg2c1
Prelimbic cortexipsiPrL1.5
Prelimbic cortex dorsal partipsiPrLd1
Prelimbic cortex ventral partipsiPrLv1
Infralimbic cortexipsiIL1.5
Frontal cortex area 2ipsiFr21
Prefrontal cortex dorsomedial partipsiPFCdm1
Lateral agranular prefrontal cortexipsiAGl-0.5
Nucleus of the posterior commissureipsiPCom3
Interpeduncular nucleusipsiIP-0.5
Lateral septal nucleusipsiLS1
Lateral septal nucleus ventral partipsiLSV1
Spinal cordipsiMES-0.5
Periaqueductal graycontraPAG3
Dorsal periaqueductal graycontraDPAG1
Dorsolateral periaqueductal graycontraDLPAG1
Caudal part of the medial periaqueductal graycontraPAGmc1
Ventral periaqueductal graycontraVPAG0.5
Ventrolateral periaqueductal graycontraVLPAG1
Ventrolateral periaqueductal gray rostral partcontraPAGvlr-0.5
Superior colliculus layerscontraSCLa-0.5
Superior colliculus superficial layerscontraSCs0
Superior colliculus intermediate layerscontraSCi0
Superior colliculus deep layerscontraSCd0
Substantia nigra A9contraSN1
Ventral tegmental area A10contraVTA-0.5
Dorsal tegmental nucleuscontraDTg1
Tegmental area lateral to the ventral tegmental nucleuscontraTGAL1
Tegmental area ventral to the ventral tegmental nucleuscontraTGAV1
Edinger Westphal nucleuscontraEW-0.5
Locus coeruleuscontraLC1
Prepositus nucleuscontraPr-0.5
Parabrachial nucleus medialcontraPBnMe-0.5
Supratrigeminal nucleuscontraSu5-0.5
Vestibular nucleicontraVnc-0.5
Raphe nucleicontraRAN1
Dorsal raphe nucleuscontraDR1
Substantia innominatacontraSI-0.5
Lateral hypothalamic areacontraLH-0.5
Posterior hypothalamic areacontraPHA-0.5
Lateral mammillary nucleuscontraLM1
ThalamuscontraT0
Parafascicular thalamic nucleus lateral partcontraPFL2
Parafascicular thalamic nucleus ventrolateral partcontraPFvl-2
Zona incertacontraZI-0.5
Nucleus of the fields of ForelcontraF-0.5
Lateral habenular nucleuscontraLHb3
Pretectal regioncontraPRT-0.5
Medial forebrain bundlecontramfb-2
Lateral agranular prefrontal cortexcontraAGl-0.5
Nucleus of the posterior commissurecontraPCom3
Interpeduncular nucleuscontraIP-0.5
Stomach wallipsiOrgsStomWS-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications