University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Intermediomedial cell column C5 right


Abbreviation
IMMC5
Color       
Superior regionsCervical segment 5

SynonymsAbbr.Language
Intermediomedial cell column C5IMMC5Eng

Output to

NameSideAbbr.WeightDetails
Lateral reticular nucleuscontraLRt1
Inferior olive dorsal nucleuscontraIOD1
Lateral hypothalamic areacontraLH1
Medial division of the hypothalamuscontraMdH1
ThalamuscontraT-0.5
Submedius thalamic nucleuscontraSub3
Prerubral fieldipsiPR-3
Lateral reticular nucleusipsiLRt3
Nucleus of the solitary tractipsiSol-0.5
Inferior olive dorsal nucleusipsiIOD3
Lateral hypothalamic areaipsiLH1
Medial division of the hypothalamusipsiMdH1
Anteromedial thalamic nucleusipsiAM-3
Paracentral thalamic nucleusipsiPC-3
Rhomboid thalamic nucleusipsiRh-3
Submedius thalamic nucleusipsiSub1.5
Reuniens thalamic nucleusipsiRe-3
Reuniens thalamic nucleus ventral partipsiReV-3
Ventrolateral thalamic nucleusipsiVL-3
Ventrobasal complexipsiVB-3
Ventromedial thalamic nucleusipsiVM-3
Posterior groupipsiPTG-3
Ventral medial nucleus of the thalamusipsiVMT-3
Zona incertaipsiZI-0.5
Corpus cavernosumipsiOrgCC1

Input from

NameSideAbbr.WeightDetails
Red nucleuscontraR3
Red nucleus dorsalcontraRDO3
Red nucleus dorsomedial partcontraRdm3
Red nucleus ventral partcontraRV0
Red nucleus ventrolateral partcontraRveL0
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Dorsolateral humpcontraCERcndl-0.5
Anterior interposed nucleuscontraAIN-0.5
Posterior interposed nucleus medial partcontraCERmpin-0.5
Ventromedial portion of the posterior interposed nucleuscontraCERpinVM-0.5
Lateral cerebellar nucleuscontraCERL-0.5
Medial cerebellar nucleuscontraMed-0.5
Ventrolateral part of the medial portion of the medial cerebellar nucleuscontraVLMMed-0.5
Dorsolateral protuberancecontraDLPr-0.5
A5 noradrenaline cellscontraA52
A7 noradrenaline cellscontraA72
Locus coeruleuscontraLC2
Prepositus nucleuscontraPr-0.5
Subcoeruleus nucleuscontraSubC2
Ambiguus nucleuscontraAmb1
Facial nucleuscontra70.5
Cuneate nucleuscontraCu1
Cuneate nucleus lateral partcontraCuLa0.5
Cuneate nucleus ventrolateral partcontraCuVL2
Cuneate nucleus ventromedial areacontraCuVM2
Nucleus interfascicularis hypoglossicontraNIFH-0.5
Nucleus of RollercontraRo-0.5
Lateral hypothalamic areacontraLH0.5
Cingulate cortex area 3 vasoregulatory region layer 3contraCg3vrL31
Cingulate cortex area 3 vasoregulatory region layer 4contraCg3vrL41
Cingulate cortex area 3 vasoregulatory region layer 5contraCg3vrL51
Cingulate cortex area 3 vasoregulatory region layer 6contraCg3vrL61
Primary somatosensory cortex forelimb regioncontraS1FL1
Nucleus of the posterior commissurecontraPCom-0.5
Spinal cord layer 6 C1contraSCL6C11
Spinal cord layer 7 C1contraSCL7C11
Spinal cord layer 8 C1contraSCL8C11
Dorsal root ganglion C2contraDRGC2-0.5
Dorsal root ganglion C3contraDRGC3-0.5
Dorsal root ganglion C4contraDRGC4-0.5
Lumbar segment 1contraL12
Lumbar segment 2contraL22
Lumbar segment 3contraL32
Lumbar segment 4contraL42
Lumbar segment 5contraL52
Lumbar segment 6contraL62
Nucleus of DarkschewitschipsiDk-0.5
Ventral tegmental area A10ipsiVTA3
Edinger Westphal nucleusipsiEW-0.5
Dorsolateral humpipsiCERcndl-0.5
Anterior interposed nucleusipsiAIN-0.5
Posterior interposed nucleus medial partipsiCERmpin-0.5
Ventromedial portion of the posterior interposed nucleusipsiCERpinVM-0.5
Lateral cerebellar nucleusipsiCERL-0.5
Medial cerebellar nucleusipsiMed-0.5
Ventrolateral part of the medial portion of the medial cerebellar nucleusipsiVLMMed-0.5
Dorsolateral protuberanceipsiDLPr-0.5
A5 noradrenaline cellsipsiA53
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Prepositus nucleusipsiPr-0.5
Paramedian reticular nucleusipsiPMn0
Parabrachial nucleusipsiPB-0.5
Subcoeruleus nucleusipsiSubC3
Ambiguus nucleusipsiAmb2
Facial nucleusipsi71
Mesencephalic trigeminal nucleusipsiMe53
Principal sensory trigeminal nucleusipsiPr53
Spinal trigeminal nucleus caudal partipsiSp5C3
Spinal trigeminal nucleus caudal part magnocellular layeripsiSp5CmL-0.5
Marginal part of the caudal spinal trigeminal nucleusipsiSp5MC-0.5
Spinal trigeminal nucleus interpolar partipsiSp5I3
Spinal trigeminal nucleus oral partipsiSp5O-0.5
Gelatinous layer of the caudal spinal trigeminal nucleusipsiGe5-0.5
Interstitial nucleus of the vestibulocochlear nerveipsiI8-0.5
Spinal vestibular nucleusipsiSpVe-0.5
Subnucleus fipsiVncf-0.5
Superior vestibular nucleusipsiSuVe-0.5
Lateral vestibular nucleusipsiLVe-0.5
Caudal part of the medial commissural subnucleusipsiMSolCC-0.5
Nucleus of the solitary tract lateral partipsiSolL-0.5
Nucleus of the solitary tract medial partipsiSolM-0.5
Dorsal motor nucleus of vagusipsi10-0.5
Dorsal raphe nucleusipsiDR3
Superior central raphe nucleusipsiCS3
Raphe obscurus nucleusipsiROb3
Raphe obscurus nucleus ventral partipsiRObV2
Raphe pallidus nucleusipsiRPa2
Cuneate nucleusipsiCu2
Cuneate nucleus lateral partipsiCuLa1
Cuneate nucleus ventrolateral partipsiCuVL3
Cuneate nucleus ventromedial areaipsiCuVM3
Nucleus interfascicularis hypoglossiipsiNIFH-0.5
Nucleus of RolleripsiRo-0.5
Dorsal in the rostral portion of the medial accessory oliveipsiIOMroD1
Ventrolateral extension of the rostral portion of the dorsal accessory oliveipsiIOMrVL1
Middle part of the principal oliveipsiIOPrMi1
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area posterior partipsiLHAp1
Tuberal division of the lateral hypothalamic areaipsiLHTC-0.5
Perifornical nucleusipsiPeF1
Cingulate cortex area 3 vasoregulatory region layer 3ipsiCg3vrL31
Cingulate cortex area 3 vasoregulatory region layer 4ipsiCg3vrL41
Cingulate cortex area 3 vasoregulatory region layer 5ipsiCg3vrL51
Cingulate cortex area 3 vasoregulatory region layer 6ipsiCg3vrL61
Primary somatosensory cortex forelimb regionipsiS1FL1
Nucleus of the posterior commissureipsiPCom-0.5
Dorsal root ganglion C2ipsiDRGC22
Dorsal root ganglion C3ipsiDRGC32
Dorsal root ganglion C4ipsiDRGC42
Lumbar segment 1ipsiL12
Lumbar segment 2ipsiL22
Dorsal root ganglion L2ipsiDRGL22
Lumbar segment 3ipsiL32
Lumbar segment 4ipsiL42
Lumbar segment 5ipsiL52
Lumbar segment 6ipsiL62
Sacral segment 1ipsiSa10.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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