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Rat connectome



Dorsomedial striatum left


Abbreviation
CPudm
Color       
Superior regionsAssociative striatum

SynonymsAbbr.Language
 Strdm 
Dorsomedial striatumCPudmEng
Dorsomedial neostriatum Eng

SubregionsSide
Dorsomedial striatum chemoarchitectonic compartmentsleft
Dorsomedial striatum dorso-caudal partleft
Dorsomedial striatum rostral partleft
Dorsomedial striatum ventro-caudal partleft
Dorsomedial striatum caudal partleft
Posterior dorsomedial striatumleft

Output to

NameSideAbbr.WeightDetails
Substantia nigra A9ipsiSN2
Substantia nigra reticular part ventral subdivision rostrocaudal extendipsiSNRvRC-0.5
Substantia nigra reticular part ventromedial tieripsiSNRVM3
Lateral hypothalamic areaipsiLH2
Globus pallidusipsiGP2
Globus pallidus mediodorsal partipsiGPmd3
Lateral globus pallidusipsiLGP2
Medial globus pallidusipsiMGP2
Dorsomedial globus pallidusipsiGPDM2
Accumbens nucleusipsiAc2

Input from

NameSideAbbr.WeightDetails
MesencephalonipsiMEC-0.5
Peduncularpontine nucleusipsiPPN-0.5
Peduncularpontine nucleus caudal levelsipsiPPNCa-0.5
Peduncularpontine nucleus rostral partipsiPPNR0.5
Substantia nigra A9ipsiSN2
Substantia nigra compact part middle two thirdsipsiSNCmitt4
Substantia nigra medial partipsiSNM2
Substantia nigra ventromedial partipsiSNvm-0.5
Ventral tegmental area A10 lateral partipsiVTAL2
Laterodorsal tegmental nucleusipsiLDTg-0.5
Pedunculopontine tegmental nucleus rostral partipsiPPTgR0.5
Anteroventral thalamic nucleusipsiAV2
Anteroventral thalamic nucleus parvicellular part rostrodorsal partipsiAVpaRD1
Interoanteromedial thalamic nucleusipsiIAM-3
Central medial thalamic nucleusipsiCM1
Central medial thalamic nucleus rostral partipsiCMr2
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC1
Parafascicular thalamic nucleusipsiPF2
Parafascicular thalamic nucleus medial partipsiPFM1
Midline group of the dorsal thalamusipsiMTN2
Ventro anterior thalamic nucleusipsiVA1
Ventrolateral thalamic nucleusipsiVL1
Ventromedial thalamic nucleusipsiVM1
Intralaminar nucleiipsiILN2
Intralaminar nuclei anterior part lateral partipsiILNAL-0.5
Intralaminar nuclei anterior part medial partipsiILNAm-0.5
Lateral posterior thalamic nucleus laterorostral partipsiLPLR1
Lateral posterior thalamic nucleus mediorostral part central and lateral regionipsiLPMRcel2
Amygdaloid complexipsiAC-0.5
Basolateral amygdaloid nucleusipsiBL1.5
Anterior basolateral nucleusipsiBLA2
Basolateral amygdaloid nucleus ventrolateral partipsiBLVL0.5
Ventral basolateral nucleusipsiBLV-1
Basomedial amygdaloid nucleusipsiBM3
Lateral amygdaloid nucleusipsiLA3
Lateral nucleus medial partipsiLAM2
Central amygdaloid nucleus intermediate divisionipsiCeI2
Posterior amygdaloid nucleusipsiCOAp-1
Nucleus of the lateral olfactory tractipsiLOT1.5
Nucleus of the lateral olfactory tract layer 2ipsiLOTL22
Nucleus of the lateral olfactory tract layer 3ipsiLOTL33
Periamygdaloid complexipsiPAC2
Periamygdaloid cortex layer 2ipsiPACL21.5
Amygdalohippocampal areaipsiAHi2
ClaustrumipsiCl-0.5
HippocampusipsiHIPP-0.5
SubiculumipsiS1
Rostral lateral entorhinal cortex layer 3ipsiEntRoL31
Lateral entorhinal cortex caudal layer 4ipsiLEntCL41
Lateral entorhinal cortex layer 3ipsiLEntL30.5
Medial entorhinal cortex layer 4ipsiMEntLyL41
Medial entorhinal cortex layer 6ipsiMEntLyL60.5
Piriform cortexipsiPir0.5
Piriform area polymorph layer [Posterior piriform cortex]ipsiPPIRCPIR31
Retrosplenial agranular cortexipsiRSA2
Midrostrocaudal part of the retrosplenial dysgranular cortexipsiRSdysmrc-0.5
Anterior cingulate cortexipsiACC2
Anterior cingulate cortex layer 3ipsiACCL31
Anterior cingulate cortex layer 6ipsiACCL61
Anterior cingulate cortex posterior part layer 5ipsiACCpL52
Anterior cingulate cortex posterior part layer 6ipsiACCpL62
Anterior cingulate cortex rostral part layer 5 aipsiACCrL5a1
Cingulate cortex area 1ipsiCg13
Cingulate cortex area 2ipsiCg23
Dorsal anterior cingulate cortexipsiDACC2
Ventral anterior cingulate cortex layer 2ipsiVACCL22
Ventral anterior cingulate cortex layer 3ipsiVACCL32
Ventral anterior cingulate cortex layer 5ipsiVACCL52
Cingulate cortex layer 2ipsiCgL2-0.5
Cingulate cortex layer 3ipsiCgL31
Cingulate cortex layer 5ipsiCgL5-0.5
Cingulate cortex layer 5 bipsiCgL5b1
Cingulate cortex layer 6ipsiCgL61
Rostral part of the cingulate cortexipsiRCg2
Prelimbic cortexipsiPrL3
Prelimbic cortex layer 5 aipsiPrLL5a1
Prelimbic cortex rostral partipsiPrLr2
Frontal association cortexipsiFrA1
Frontal association cortex layer 5ipsiFrALL5-0.5
Frontal cortex area 1ipsiFr13
Frontal cortex area 1 layer 6ipsiFr1L6-0.5
Frontal cortex area 2ipsiFr23
Frontal cortex area 2 layer 6ipsiFr2L6-0.5
Parietal association cortex layer 5ipsiParPLa5-0.5
Parietal association cortex layer 6ipsiParPLa6-0.5
Parietal cortex area 1ipsiPar12
Parietal cortex area 2ipsiPar22
Temporal association area 2 ventral partipsiTe2V-0.5
Auditory regionsipsiAU-0.5
Primary auditory cortexipsiAu11
Primary auditory cortex layer 3ipsiAu1L31
Primary auditory cortex layer 5ipsiAu1L53
Primary auditory cortex layer 5 bipsiAu1L5b1
Primary auditory cortex layer 6ipsiAu1L61
Secondary auditory cortexipsiAu23
Secondary auditory cortex posterior part layer 5ipsiAu2pL53
Agranular insular cortexipsiAI2
Agranular insular cortex anterior partipsiAIA1
Agranular insular cortex dorsal partipsiAID0
Insular sulcal areaipsiInCA2
Perirhinal cortexipsiA352
Perirhinal cortex layer 5 aipsiPRhL5a1
Prefrontal cortexipsiPFC-0.5
Medial sulcal areaipsiMeSA2
Medial sulcal area layer 5 aipsiMeSAL5a-0.5
Lateral prefrontal cortexipsilPFC0
Lateral agranular prefrontal cortexipsiAGl2
Forelimb motor cortexipsiFMCx3
Hindlimb motor cortexipsiHMCx3
Lateral agranular prefrontal cortex posteromedial partipsiAGlpm2
Whiskers motor cortexipsiWMCx2
Medial prefrontal cortexipsimPFC2
Medial agranular prefrontal cortexipsiAGm-0.5
Sensory regionsipsiSR0.5
Primary somatosensory cortex hindlimb regionipsiS1HL2
Visual regionsipsiVR-0.5
Primary visual cortexipsiV1-0.5
Central primary visual areaipsiV1Ce3
Primary visual cortex layer 3ipsiV1L31
Primary visual cortex layer 5ipsiV1L5-0.5
Primary visual cortex layer 5 bipsiV1L5b1
Primary visual cortex layer 6ipsiV1L61
Secondary visual cortex medial areaipsiV2M-0.5
Secondary visual cortex medial area rostral partipsiV2Mr3
Secondary visual cortex lateral areaipsiV2L3
Orbitofrontal cortexipsiOrFCx1
Medial orbital cortexipsiMO2
Ventral orbital cortexipsiVO1
Parafascicular thalamic nucleus medial partcontraPFM0
Basolateral amygdaloid nucleuscontraBL-0.5
Anterior basolateral nucleuscontraBLA1
Basolateral nucleus medial portioncontraBLmp3
Basomedial amygdaloid nucleuscontraBM1
Lateral amygdaloid nucleuscontraLA1
Lateral nucleus medial partcontraLAM1
Central amygdaloid nucleus intermediate divisioncontraCeI3
Nucleus of the lateral olfactory tract layer 2contraLOTL21
Nucleus of the lateral olfactory tract layer 3contraLOTL31
Periamygdaloid complexcontraPAC1
Amygdalohippocampal areacontraAHi1
Rostral lateral entorhinal cortex layer 3contraEntRoL30.5
Lateral entorhinal cortex caudal layer 4contraLEntCL40.5
Lateral entorhinal cortex layer 3contraLEntL30.5
Medial entorhinal cortex layer 4contraMEntLyL41
Medial entorhinal cortex layer 6contraMEntLyL60.5
Piriform cortexcontraPir0.5
Piriform area polymorph layer [Posterior piriform cortex]contraPPIRCPIR30.5
Retrosplenial agranular cortexcontraRSA2
Anterior cingulate cortexcontraACC1
Anterior cingulate cortex layer 3contraACCL30.5
Anterior cingulate cortex layer 6contraACCL61
Anterior cingulate cortex rostral part layer 5 acontraACCrL5a1
Cingulate cortex area 1contraCg11
Cingulate cortex area 2contraCg21
Dorsal anterior cingulate cortexcontraDACC1
Cingulate cortex layer 2contraCgL2-0.5
Cingulate cortex layer 3contraCgL3-0.5
Cingulate cortex layer 5contraCgL5-0.5
Cingulate cortex layer 6contraCgL6-0.5
Rostral part of the cingulate cortexcontraRCg2
Prelimbic cortexcontraPrL1
Prelimbic cortex layer 5 acontraPrLL5a1
Frontal cortex area 1contraFr11
Frontal cortex area 1 layer 6contraFr1L6-0.5
Frontal cortex area 2contraFr21
Frontal cortex area 2 layer 6contraFr2L6-0.5
Parietal cortex area 1contraPar11
Parietal cortex area 2contraPar21
Secondary auditory cortexcontraAu21
Agranular insular cortexcontraAI1
Agranular insular cortex anterior partcontraAIA1
Agranular insular cortex dorsal partcontraAID0
Insular sulcal areacontraInCA1
Perirhinal cortexcontraA351
Perirhinal cortex layer 5 acontraPRhL5a1
Medial sulcal areacontraMeSA1
Medial sulcal area layer 5 acontraMeSAL5a-0.5
Lateral prefrontal cortexcontralPFC0
Forelimb motor cortexcontraFMCx1
Hindlimb motor cortexcontraHMCx1
Lateral agranular prefrontal cortex posteromedial partcontraAGlpm1
Whiskers motor cortexcontraWMCx1
Medial prefrontal cortexcontramPFC1
Sensory regionscontraSR0.5
Primary somatosensory cortex hindlimb regioncontraS1HL1
Central primary visual areacontraV1Ce1
Primary visual cortex layer 5contraV1L5-0.5
Secondary visual cortex medial area rostral partcontraV2Mr1
Secondary visual cortex lateral areacontraV2L1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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