University of Rostock

Department of Anatomy

Neuroscience Group

  Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Basolateral amygdaloid nucleus left


Abbreviation
BL
Color       
Superior regionsBasal nucleus

SynonymsAbbr.Language
 AmBl 
Basolateral nucleusBLEng
Baso-lateral amygdala  
Basolateral nucleus of the amygdalaBLAEng
Basolateral nuclear complex of the amygdala Eng
Basolateral amygdalar nucleusBLAEng
Basolateral nuclear complex of amygdalaBLCEng
Amygdalar basolateral nuclear complexBLCEng
Basolateral amygdaloid nucleusBLA 
Basolateral amygdaloid complex Eng
Basolateral amygdalaAmBLEng

SubregionsSide
Anterior basolateral nucleusleft
Basolateral amygdaloid nucleus caudal medial portionleft
Basolateral amygdaloid nucleus ventral partleft
Basolateral amygdaloid nucleus ventrolateral partleft
Basolateral nucleus caudal partleft
Basolateral nucleus dorsolateral partleft
Basolateral nucleus dorsomedial partleft
Basolateral nucleus lateral partleft
Basolateral nucleus medial portionleft
Basolateral nucleus mediodorsal portionleft
Basolateral nucleus rostral partleft
Basolateral nucleus ventral portion anterior segmentleft
Basolateral nucleus ventromedial partleft
Caudoventral part of the basolateral amygdaloid nucleusleft
External borders of the basolateral amygdalaleft
Internal border of the basolateral amygdalaleft
Middle third of basolateral amygdaloid nucleusleft
Posterior basolateral nucleusleft
Rostrocaudal extent of the basolateral amygdaloid nucleusleft
Ventral basolateral nucleusleft
Parvicellular basolateral nuclear complex of the amygdalaleft
Anteroventral part of the basolateral amygdaloid nucleusleft
Basolateral amygdaloid nucleus caudolateral partleft
Amygdala basolateral nucleus pyramidal neuronleft
Basolateral amygdaloid nucleus midlevelsleft

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC-0.5
Dorsolateral periaqueductal grayipsiDLPAG1
Dorsomedial periaqueductal grayipsiDMPAG1
Lateral periaqueductal grayipsiLPAG1
Ventrolateral periaqueductal grayipsiVLPAG3
Red nucleusipsiR1
Substantia nigra compact partipsiSNC1.5
Substantia nigra lateral partipsiSNL1.5
Ventral tegmental area A10ipsiVTA3
Ventral tegmental area A10 caudal partipsiVTAcp0.5
Ventral tegmental area rostral partipsiVTAR0.5
Pedunculopontine tegmental nucleusipsiPPTg-10
Paraflocculus ventral partipsiPFlv1
FlocculusipsiFl1
Middle cerebellar peduncleipsimcp0
Superior cerebellar peduncleipsisucep-2
Parabrachial nucleusipsiPB1
Lateral parabrachial nucleus central partipsiLPBC2
Lateral parabrachial nucleus dorsal partipsiLPBD1
Lateral parabrachial nucleus external partipsiLPBE2
Lateral parabrachial nucleus superior partipsiLPBS1
Lateral parabrachial nucleus ventral partipsiLPBV2
Parabrachial nucleus lateral crescentipsiPBlc2
Supragenual nucleusipsiSGe-0.5
Medulla oblongataipsiMeOb0
Intertrigeminal nucleusipsiI50
Supratrigeminal nucleusipsiSu50
Mesencephalic trigeminal nucleusipsiMe50
Principal sensory trigeminal nucleusipsiPr50
Spinal trigeminal nucleus caudal partipsiSp5C0
Spinal trigeminal nucleus interpolar partipsiSp5I0
Peritrigeminal zoneipsiP50
Nucleus of the solitary tractipsiSol0
Dorsal motor nucleus of vagus posterior partipsi10Po0
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus lateral wingipsiDRlw1.5
Dorsal raphe nucleus median partipsiDRM1.5
ProsencephalonipsiPRC-0.5
Basal forebrainipsiBAF-3
Endopiriform systemipsiEnN-0.5
Islands of CallejaipsiICj0
Diagonal band of BrocaipsiDBB1
Nucleus of the horizontal limb of the diagonal bandipsiHDB-0.5
Substantia innominataipsiSI3
Substantia innominata anterior partipsiSIA1
Substantia innominata caudal aspectipsiSIc3
Substantia innominata dorsal partipsiSID1
Substantia innominata posterior partipsiSIP3
Substantia innominata rostral aspectipsiSIr0.5
Substantia innominata sublenticular partipsiSIS3
Substantia innominata ventral partipsiSIV1
Anterior part of the ventral region of the substantia innominataipsiSIVa3
Posterior part pof the ventral region of the substantia innominataipsiSIVp1.5
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA1
Magnocellular preoptic nucleusipsiMCPO3
Dorsomedial hypothalamic nucleusipsiDMHy0.5
Preoptic medial regionipsiPMeR-0.5
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area anterior partipsiLHAa1
Lateral hypothalamic area intermediate ventrolateral levelipsiLHiVL0.5
Lateral hypothalamic area lateral partipsiLHAL1
Lateral hypothalamic area medial partipsiLHAm1.5
Lateral hypothalamic area perifornical partipsiPFx2
Lateral hypothalamic area posterior partipsiLHAp2
Lateral hypothalamic area rostral partipsiLHro1
Lateral hypothalamic area ventral partipsiLHAvp-0.5
Medial division of the hypothalamusipsiMdH0
Anterior hypothalamic areaipsiAHA0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe1
Area periventricularis hypothalamica communis [Regio hypothalamus caudalis]ipsiPeRHC0
Dorsal hypothalamic areaipsiDA0
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0
Posterior hypothalamic areaipsiPHA0
Tuberal area lateral partipsiTAL0
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus central partipsiVMHC-0.5
Ventromedial hypothalamic nucleus posterior partipsiVMHP1
Ventromedial hypothalamic nucleus shellipsiVMS3
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL-0.5
Arcuate nucleusipsiArc1
Paraventricular nucleus of the hypothalamus magnocellular division anterior magnocellular partipsiPaAMa0
Paraventricular hypothalamic nucleus parvicellular division dorsal partipsiPaPcD0
Paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPa0
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP0
Posterior magnocellular subdivision of the paraventricular hypothalamic nucleusipsiPaPoM0
Paraventricular hypothalamic nucleus ventral part [Periventricular zone anterior region]ipsiPaV0
Paraventricular hypothalamic nucleusipsiPa1
Border of the posterior magnocellular and medial parvocellular subdivision at mid-level of the rostrocaudal extentipsiPabPmmp0
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag0
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo0.5
Paraventricular nucleus medial parvocellular partipsiPaMep0
Periventricular hypothalamic nucleusipsiPe1
Suprachiasmatic nucleusipsiSCh0
Supraoptic nucleus [Supraoptic region]ipsiSO-0.5
Premammillary nucleusipsiPMAN-0.5
Premammillary nucleus dorsal partipsiPMD-0.5
Premammillary nucleus ventral partipsiPMV-0.5
Perifornical nucleusipsiPeF0.5
Retrochiasmatic areaipsiRCh0.5
Anteromedial thalamic nucleusipsiAM-0.5
Interoanteromedial thalamic nucleusipsiIAM1
Parafascicular thalamic nucleusipsiPF1
Rhomboid thalamic nucleusipsiRh1
Mediodorsal thalamic nucleusipsiMD1
Mediodorsal thalamic nucleus central partipsiMDC1
Mediodorsal thalamic nucleus lateral partipsiMDL-10
Mediodorsal thalamic nucleus medial partipsiMDM2
Paraventricular thalamic nucleusipsiPV1
Nucleus of the stria medullarisipsiSM-0.5
Reticular thalamic nucleus caudal partipsiRtc-10
Reticular thalamic nucleus intermediate partipsiRti-10
Subparafascicular thalamic nucleusipsiSPF1
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Zona incertaipsiZI0
Zona incerta rostral partipsiZIR2
Tuber cinereum areaipsiTC0
Medial habenular nucleusipsiMHb-0.5
Longitudinal association bundleipsilab-2
Medial forebrain bundle at the level of the anterior commissureipsimfbac0
Medial forebrain bundle at the level of the lateral preoptic areraipsimfbLpa-2
Medial forebrain bundle at the level of the anterior hypothalamic nucleusipsimfbahn0
Medial forebrain bundle at the level of the lateral hypothalamusipsimfbLH0
Medial forebrain bundle at the level of the posterior hypothalamic nucleusipsimfbPH0
Stria medullaris of the thalamusipsism-2
Dorsal bank of the anterior portion of the rhinal fissureipsidarf1
Basolateral amygdaloid nucleusipsiBL-0.5
Lateral amygdaloid nucleusipsiLA2
Extended amygdalaipsiEXA-3
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis anterior dorsal areaipsiBSTAD3
Bed nucleus of the stria terminalis anterior lateral areaipsiBSTAL3
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv1
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL3
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV3
Bed nucleus of the stria terminalis medial and lateral partipsiBSTML3
Bed nucleus of the stria terminalis medial divisionipsiBSTM3
Bed nucleus of the stria terminalis posterior divisionipsiBSTP2
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd1
Bed nucleus of the stria terminalis posteriormedial divisionipsiBSTPM0
Supracapsular bed nucleus of the stria terminalis lateral partipsiBSTSl2.5
Supracapsular bed nucleus of the stria terminalis ventral component lateral partipsiBSTSvL2
Bed nucleus of the stria terminalis ventral partipsiBNSTv1
Bed nucleus of the stria terminalis vertical limb lateral partipsiBSTvLiL2
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus lateral divisionipsiCeL-1
Central amygdaloid nucleus medial divisionipsiCeM-0.5
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC2
Interstitial nucleus of the posterior limb of the anterior commissure lateral partipsiIPACL-0.5
Sublenticular extended amygdalaipsiSLEA-0.5
Olfactory amygdalaipsiOA-0.5
Anterior amygdaloid areaipsiAA-0.5
Anterior amygdaloid area dorsal partipsiAAD3
Nucleus of the lateral olfactory tractipsiLOT-0.5
Periamygdaloid complex medial divisionipsiPACm1
Medial amygdaloid nucleusipsiMe-0.5
Amygdalostriatal transition area rostromedial partipsiAStrrm2
Subventricular nucleusipsiSV-0.5
ClaustrumipsiCl-0.5
Globus pallidusipsiGP0
Lateral globus pallidusipsiLGP2
Medial globus pallidusipsiMGP2
Ventral pallidumipsiVP-0.5
StriatumipsiSTR0.5
Accumbens nucleusipsiAc3
Accumbens nucleus anterolateral partipsiAcAL1
Accumbens nucleus anteromedial partipsiAcAM3
Accumbens nucleus coreipsiAcbC3
Accumbens nucleus rostral partipsiAcR1
Rostral pole of the accumbens nucleusipsiAcbRP-0.5
Accumbens nucleus shellipsiAcbSh3
Accumbens nucleus caudomedial shellipsiAcbShcm2
Dorsomedial shellipsiAcbShdm1
Medial accumbens shellipsiAcbShm-0.5
Lateral nucleus accumbensipsiAcl3
Medial accumbensipsiAcbM3
Caudate putamenipsiCPu3
Dorsomedial striatumipsiCPudm1.5
Medial striatumipsiCPum1
Caudal striatumipsiCPuc2
Caudate putamen caudolateral partipsiCPucl3
Caudodorsal striatumipsiCPucd2
Dorsal striatumipsiCPud1
Dorsolateral striatumipsiCPudl3
Dorsolateral striatum dorsal partipsiCPudlD0.5
Rostral striatumipsiCPur1
Rostromedial striatumipsiCPurm2
Rostroventral striatumipsiCPurv2
Ventral striatumipsiCPuv3
Ventrolateral striatumipsiCPuvl-0.5
Ventromedial striatumipsiCPuvm-1
Jaw region of the striatumipsiCPuJaw3
Lateral striatumipsiCPul2
Fundus of the striatum caudal partipsiFSc3
Fundus of the striatum rostral partipsiFSr3
Dentate gyrusipsiDG0
Field CA1 of hippocampusipsiCA1-0.5
Ventral tip of CA1 stratum lacunosum-moleculareipsiCA1vtsLm-0.5
Field CA3 of hippocampusipsiCA3-0.5
Subiculum ventral partipsiSv0.5
Subiculum ventral part pyramidal layeripsiSvPy0.5
Subiculum dorsoventral extensionipsiSdv0.5
Ventral hippocampusipsiHIPPv-0.5
Fornixipsif-2
PresubiculumipsiPrS0
ParasubiculumipsiPaS-0.5
Parasubiculum deep layer 1ipsiPaSdL1-0.5
Parasubiculum layer 2ipsiPaSL2-0.5
Parasubiculum superficial layer 3ipsiPaSsL3-0.5
PostsubiculumipsiPost0
Entorhinal cortexipsiEnt3
Medial entorhinal cortex layer 5ipsiMEntLyL51.5
Ventrolateral entorhinal cortexipsiVLENT-0.5
Piriform cortexipsiPir-0.5
Postpiriform transition areaipsiTR-0.5
Cingulate cortexipsiCg1
Anterior cingulate cortexipsiACC-0.5
Cingulate cortex area 1ipsiCg1-0.5
Cingulate cortex area 2ipsiCg2-0.5
Dorsal anterior cingulate cortexipsiDACC-0.5
Dorsal anterior cingulate cortex layer 3ipsiDACCL33
Dorsal anterior cingulate cortex layer 5ipsiDACCL53
Dorsal anterior cingulate cortex layer 6ipsiDACCL63
Dorsal anterior cingulate cortex layer 1ipsiDACCL13
Dorsal anterior cingulate cortex layer 2ipsiDACCL23
Dorsal cingulate cortexipsiDCC1.5
Prelimbic cortexipsiPrL3
Prelimbic cortex layer 1ipsiPrLL13
Prelimbic cortex layer 2ipsiPrLL23
Prelimbic cortex layer 3ipsiPrLL33
Prelimbic cortex layer 5ipsiPrLL53
Prelimbic cortex layer 6ipsiPrLL63
Infralimbic cortexipsiIL2
Infralimbic cortex layer 1ipsiILL12
Infralimbic cortex layer 2ipsiILL22
Infralimbic cortex layer 5ipsiILL52
Infralimbic cortex layer 6ipsiILL62
Frontal association cortexipsiFrA-0.5
Frontal cortex area 2ipsiFr21
Most ventral part of the pregenual part of the anteromedial cortexipsiFr2mvpg1.5
Parietal association cortexipsiPtA-1
Auditory regionsipsiAU-0.5
Frontal polar cortexipsiFP0
Insular cortexipsiICX3
Agranular insular cortexipsiAI3
Agranular insular cortex dorsal partipsiAID3
Agranular insular cortex dorsal part deep layersipsiAIDdL-0.5
Agranular insular cortex dorsal part superficial layersipsiAIDsL3
Agranular insular cortex layer 5ipsiAIL53
Agranular insular cortex layer 6ipsiAIL63
Agranular insular cortex layer 1ipsiAIL13
Agranular insular cortex layer 2ipsiAIL23
Agranular insular cortex layer 3ipsiAIL33
Agranular insular cortex posterior partipsiAIP2
Agranular insular cortex posterior part layer 5ipsiAIPL53
Agranular insular cortex posterior part layer 6ipsiAIPL63
Agranular insular cortex ventral part jaw movement areaipsiAIVjm-0.5
Primary agranular gustatory cortexipsipaGC-0.5
Primary agranular gustatory cortex supragranular layersipsipaGCs-0.5
Primary agranular gustatory cortex infragranular layersipsipaGCi-0.5
Dysgranular insular cortexipsiDI2
Dysgranular insular cortex layer 1ipsiDIL13
Dysgranular insular cortex layer 2ipsiDIL23
Dysgranular insular cortex layer 3ipsiDIL33
Dysgranular insular cortex layer 5ipsiDIL53
Dysgranular insular cortex layer 6ipsiDIL63
Granular insular cortexipsiGI2
Granular insular cortex anterior partipsiGIa0
Perirhinal cortexipsiA352
Ectorhinal cortexipsiA362
Dorsal peduncular cortexipsiDP-0.5
Prefrontal cortexipsiPFC3
Frontal pole of prefrontal cortexipsiFPFC3
Prefrontal cortex supragenual partipsisgPFC0
Dorsal part of the pregenual sector of the prefrontal cortexipsidpgPFC1
Somatomotoric regionsipsiSMR1
Lateral prefrontal cortexipsilPFC3
Lateral agranular prefrontal cortexipsiAGl-0.5
Jaw movement motor cortexipsiJMCx2.5
Medial prefrontal cortexipsimPFC3
Medial prefrontal cortex layer 5ipsimPFCL52
Medial prefrontal cortex layer 6ipsimPFCL6-1
Medial prefrontal cortex layer 3ipsimPFCL3-1
Medial prefrontal cortex layer 4ipsimPFCL4-1
Medial prefrontal cortex layer 2ipsimPFCL22
Medial prefrontal cortex posterior partipsimPFCp0
Medial agranular prefrontal cortexipsiAGm-0.5
Secondary somatosensory cortexipsiS21
Primary visual cortexipsiV10
Orbitofrontal cortexipsiOrFCx3
Lateral orbital cortexipsiLO-0.5
Medial orbital cortexipsiMO-1
Ventrolateral orbital area posterior partipsiVLOp-0.5
Orbital prefrontal cortexipsioPFC2
Lateral orbitofrontal cortexipsiLOFC-0.5
Area between retrosplenial cortex and secondary visual cortex medial areaipsiRSCbV2m3
Anterior commissureipsiac0
Olfactory nucleiipsiONn2
Olfactory tubercleipsiTuO3
Olfactory tubercle lateral partipsiTuOL2
Lateral septal nucleusipsiLS2
Red nucleuscontraR0
Medulla oblongatacontraMeOb0
Dorsal raphe nucleuscontraDR0.5
Dorsal raphe nucleus lateral wingcontraDRlw0.5
Dorsal raphe nucleus median partcontraDRM0.5
Substantia innominatacontraSI3
Paraventricular hypothalamic nucleuscontraPa0
Subparafascicular thalamic nucleus rostral partcontraSPFr0.5
Basolateral amygdaloid nucleuscontraBL1
Anterior basolateral nucleuscontraBLA1
Ventral basolateral nucleuscontraBLV1
Basomedial amygdaloid nucleuscontraBM1
Bed nucleus of the stria terminaliscontraBST0.5
Bed nucleus of the stria terminalis caudal part caudoventral regioncontraBSTCacv1
Bed nucleus of the stria terminalis caudal part perifornical regioncontraBSTCapf1
Bed nucleus of the stria terminalis lateral divisioncontraBSTL3
Bed nucleus of the stria terminalis medial divisioncontraBSTM3
Central amygdaloid nucleuscontraCe-0.5
Medial amygdaloid nucleuscontraMe-0.5
Amygdalostriatal transition area rostromedial partcontraAStrrm1
Accumbens nucleus posterolateral partcontraAcbpl1
Lateral nucleus accumbenscontraAcl1
Dorsomedial striatumcontraCPudm-0.5
Caudal striatumcontraCPuc1
Caudodorsal striatumcontraCPucd0.5
Dorsolateral striatumcontraCPudl-0.5
Rostral striatumcontraCPur0.5
Rostromedial striatumcontraCPurm0.5
Rostroventral striatumcontraCPurv1
Ventrolateral striatumcontraCPuvl-0.5
Anterior cingulate cortexcontraACC-0.5
Dorsal anterior cingulate cortex layer 3contraDACCL31
Dorsal anterior cingulate cortex layer 5contraDACCL51
Dorsal anterior cingulate cortex layer 1contraDACCL11
Prelimbic cortex layer 1contraPrLL11
Prelimbic cortex layer 3contraPrLL31
Prelimbic cortex layer 5contraPrLL51
Parietal association cortexcontraPtA-1
Auditory regionscontraAU-0.5
Agranular insular cortexcontraAI1
Agranular insular cortex dorsal part superficial layerscontraAIDsL1
Dysgranular insular cortexcontraDI1
Jaw movement motor cortexcontraJMCx1
Medial prefrontal cortexcontramPFC1
Orbitofrontal cortexcontraOrFCx2.5
Lateral orbital cortexcontraLO0
Pterygopalatine ganglionipsiAutoPpG-0.5

Input from

NameSideAbbr.WeightDetails
Brain stemipsiBS-1
MesencephalonipsiMEC3
Central grayipsiCG1
Periaqueductal grayipsiPAG-0.5
Ventral periaqueductal grayipsiVPAG-0.5
Ventrolateral periaqueductal grayipsiVLPAG0.5
Periventricular gray matteripsiPVG1
Dorsal tegmental bundleipsidtg-0.5
Peduncularpontine nucleusipsiPPN1
Substantia nigra A9ipsiSN3
Substantia nigra compact partipsiSNC3
Substantia nigra compact part dorsal tieripsiSNCD2
Substantia nigra compact part lateral tieripsiSNCL3
Substantia nigra compact part medial tieripsiSNCM2
Substantia nigra compact part ventral tieripsiSNCV2
Substantia nigra lateral partipsiSNL2
Substantia nigra medial partipsiSNM2
Substantia nigra reticular partipsiSNR-0.5
Ventral tegmental area A10ipsiVTA3
Ventral tegmental area A10 dorsal partipsiVTAd-0.5
Interfascicular nucleusipsiIF1
Aminergic cell groups of the ventral tegmental area of the midbrainipsiVTAacg-0.5
Paranigral nucleusipsiPN3
Caudal linear nucleus of the rapheipsiCLi1
Peripeduncular areaipsiPPA-0.5
Peripeduncular nucleusipsiPP2
Retrorubral nucleusipsiRR2
Ventromedial mesencephalic tegmentumipsiVMTg2
Laterodorsal tegmental nucleusipsiLDTg2
Dorsal tegmental nucleusipsiDTg1
Pedunculopontine tegmental nucleusipsiPPTg3
Edinger Westphal nucleusipsiEW1
Paramedian lobuleipsiPM-0.5
Locus coeruleusipsiLC3
Nucleus incertus pars compactaipsiNIc1
Nucleus incertus pars dissipataipsiNId1
Pontine grayipsiPG-0.5
Pontine tegmental fieldipsiPTF-1
Parabrachial nucleusipsiPB3
Koelliker Fuse nucleusipsiKF3
Lateral parabrachial nucleusipsiLPB-0.5
Parabrachial nucleus dorsal partipsiPBD-0.5
Parabrachial nucleus external divison lateral partipsiPBeDL4
Parabrachial nucleus medialipsiPBnMe2
Parabrachial nucleus ventral part lateral portionipsiPBVL2
Transition zone of the nucleus reticularis ventralis medullae oblongata and nucleus paragigantocellularis lateralisipsiTMdVLPG-0.5
Subcoeruleus nucleusipsiSubC3
Subcoeruleus nucleus alpha partipsiSubCA0.5
Subcoeruleus nucleus dorsal partipsiSubCD1
Mesencephalic trigeminal nucleusipsiMe50.5
Nucleus of the solitary tractipsiSol0.5
Nucleus of the solitary tract caudal partipsiSolca-0.5
Dorsal motor nucleus of vagusipsi10-0.5
Raphe nucleiipsiRAN-3
Dorsal raphe nucleusipsiDR2
Dorsal raphe nucleus caudal partipsiDRC3
Dorsal raphe nucleus caudal part non serotoninergic populationipsiDRCnsp1
Dorsal raphe nucleus dorsal partipsiDRD3
Dorsal raphe nucleus dorsal part non serotoninergic populationipsiDRDnsp1
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm0.5
Dorsal raphe nucleus interfascicular partipsiDRI0.5
Dorsal raphe nucleus interfascicular part non serotoninergic populationipsiDRInsp1
Dorsal raphe nucleus lateral wing non serotoninergic populationipsiDRIwnsp1
Dorsal raphe nucleus middle part core regionipsiDRmiC0.5
Dorsal raphe nucleus middle part shell regionipsiDRsh3
Dorsal raphe nucleus midrostrocaudal part non serotoninergic populationipsiDRmrcnsp1
Dorsal raphe nucleus rostral partipsiDRr3
Dorsal raphe nucleus rostral part non serotoninergic populationipsiDRrnsp1
Dorsal raphe nucleus ventral partipsiDRV3
Dorsal raphe nucleus ventral part non serotoninergic populationipsiDRVnsp1
Dorsal raphe nucleus ventrolateral partipsiDRVL1.5
Dorsal raphe nucleus ventrolateral part non serotoninergic populationipsiDRVLnsp1
Median raphe nucleusipsiMnR2
Superior central raphe nucleusipsiCS2
Raphe magnus nucleusipsiRMg-0.5
B6 subnucleusipsiB61
Ventral lateral medulla oblongataipsiMVL1
Medulla oblongata dorsomedial partipsiMeObDM-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Basal forebrainipsiBAF3
Endopiriform systemipsiEnN0.5
Dorsal endopiriform nucleusipsiDEn1
Diagonal band of BrocaipsiDBB1.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the horizontal limb of the diagonal band rostral partipsiRPHDB1
Nucleus of the horizontal limb of the diagonal band caudolateral partipsiHDBCL2
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Medial septal nucleusipsiMS3
Basal nucleus MeynertipsiB2
Basal nucleus Meynert anterior partipsiBan2.5
Basal nucleus Meynert intermediate divisonipsiBim1.5
Basal nucleus Meynert posterior divisionipsiBpd2.5
Substantia innominataipsiSI3
Substantia innominata dorsal partipsiSID3
Substantia innominata sublenticular partipsiSIS-1
Substantia innominata ventral partipsiSIV3
Nucleus of the ansa lenticularisipsiAL-0.5
Lateral preoptic areaipsiLPO3
Medial preoptic areaipsiMPA-1
Magnocellular preoptic nucleusipsiMCPO1
Tenia tectaipsiTT-0.5
Caudal part of the dorsomedial hypothalamic nucleusipsiDMHyC-0.5
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar0
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR0
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp0
Lateral zoneipsiLHA0.5
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm0
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa0
Lateral hypothalamic area perifornical partipsiPFx2
Lateral hypothalamic area posterior partipsiLHAp2
Lateral hypothalamic area [Lateral zone mammillary level]ipsiLHLZM-0.5
Medial division of the hypothalamusipsiMdH-0.5
Anterior hypothalamic areaipsiAHA0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Posterior hypothalamic areaipsiPHA1
Posterior hypothalamic nucleus caudal partipsiPHCa0
Posterior hypothalamic nucleus rostral partipsiPHRo1
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus central partipsiVMHC2
Ventromedial hypothalamic nucleus shellipsiVMS1
Arcuate nucleusipsiArc0
Paraventricular hypothalamic nucleusipsiPa-0.5
Periventricular hypothalamic nucleusipsiPe1
Periventricular groupipsiPEG-0.5
Premammillary nucleus dorsal partipsiPMD-0.5
Premammillary nucleus ventral partipsiPMV-0.5
Supramammillar nucleusipsiSuM-0.5
A8 dopamine cells retrorubral groupipsiRRF2
Perifornical nucleusipsiPeF-0.5
Retrochiasmatic areaipsiRCh1
ThalamusipsiT-0.5
Anteromedial thalamic nucleusipsiAM-0.5
Anteromedial thalamic nucleus caudal partipsiAMc1
Anteromedial thalamic nucleus caudalmost partipsiAMcm0.5
Anteromedial thalamic nucleus intermediate partipsiAMi1
Anteromedial thalamic nucleus rostral partipsiAMr1
Interoanteromedial thalamic nucleusipsiIAM3
Central medial thalamic nucleusipsiCM3
Central medial thalamic nucleus caudal partipsiCMca4
Central medial thalamic nucleus rostral partipsiCMr2
Parafascicular thalamic nucleusipsiPF-3
Parafascicular thalamic nucleus medial partipsiPFM-0.5
Rhomboid thalamic nucleusipsiRh3
Posterior thalamic nuclear groupipsiPo-0.5
Suprageniculate thalamic nucleusipsiSG-0.5
Mediodorsal thalamic nucleusipsiMD1
Intermediodorsal thalamic nucleusipsiIMD2
Mediodorsal thalamic nucleus lateral partipsiMDL-0.5
Mediodorsal thalamic nucleus medial partipsiMDM-0.5
Submedius thalamic nucleus parvicellular partipsiSPFPC-0.5
Midline group of the dorsal thalamusipsiMTN3
Paratenial thalamic nucleusipsiPT2
Paraventricular thalamic nucleusipsiPV3
Paraventricular thalamic nucleus anterior partipsiPVA1
Paraventricular thalamic nucleus anterior part ventral portionipsiPVAV2
Paraventricular thalamic nucleus caudal partipsiPVca1.5
Paraventricular thalamic nucleus dorsal partipsiPVdo1.5
Paraventricular thalamic nucleus medial partipsiPVM2
Paraventricular thalamic nucleus posterior partipsiPVP2
Paraventricular thalamic nucleus rostral partipsiPVr1.5
Paraventricular thalamic nucleus ventral partipsiPVV1.5
Reuniens thalamic nucleusipsiRe2
Ventral posterior thalamic nucleus parvicellular partipsiVPPC-0.5
Ventral posteromedial thalamic nucleus parvicellular partipsiVPMpc0.5
Basal nucleus of the ventromedial thalamic nucleusipsiVMB-0.5
Basal nucleus of the ventromedial thalamic nucleus lateral partipsiVMBL-0.5
Intralaminar nucleiipsiILN-0.5
Posterior intralaminar thalamic nucleusipsiPIL-0.5
Parafascicular nucleusipsiPFa0.5
Medial thalamic zoneipsiMTZ1
Nucleus of the stria medullarisipsiSM-0.5
Posterior groupipsiPTG-0.5
Triangular portion of the posterior nuclear groupipsiPTGtri-0.5
Posteromedian thalamic nucleusipsiPoMn-0.5
Subparafascicular thalamic nucleusipsiSPF3
Subparafascicular thalamic nucleus rostral partipsiSPFr0
HabenulaipsiHAB-0.5
Lateral habenular nucleusipsiLHb0.5
Dorsal bank of rhinal fissureipsiDBrf2
Ventral bank of the rhinal fissureipsiVBrf2
Amygdaloid complexipsiAC-0.5
Basal nucleus magnocellular partipsiBmc2
Basolateral amygdaloid nucleusipsiBL-0.5
Anterior basolateral nucleusipsiBLA1
Anterior basomedial nucleusipsiBMA-0.5
Lateral amygdaloid nucleusipsiLA-0.5
Bed nucleus of the stria terminalisipsiBST0.5
Bed nucleus of the stria terminalis intraamygdaloid division lateral partipsiBSTIAL-0.5
Bed nucleus of the stria terminalis intraamygdaloid division medial partipsiBSTIAm-0.5
Bed nucleus of the stria terminalis intraamygdaloid division anterior partipsiBSTIAa-0.5
Bed nucleus of the stria terminalis lateral divisionipsiBSTL1
Bed nucleus of the stria terminalis lateral division dorsal partipsiBSTLD0
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV0.5
Bed nucleus of the stria terminalis medial divisionipsiBSTM-0.5
Central amygdaloid nucleusipsiCe1
Central amygdaloid nucleus lateral divisionipsiCeL-0.5
Central amygdaloid nucleus medial divisionipsiCeM-0.5
Central division of sublenticular extended amygdalaipsiSLEAc-0.5
Amygdalopiriform transition areaipsiAPir3
Anterior amygdaloid areaipsiAA0.5
Cortical amygdaloid nucleusipsiCAn-0.5
Anterior cortical amygdaloid nucleusipsiACo-0.5
Anterior cortical amygdaloid nucleus layer 2ipsiACoL2-0.5
Anterior cortical amygdaloid nucleus layer 2bipsiACoL2b-0.5
Anterior cortical amygdaloid nucleus layer 3ipsiACoL3-0.5
Posterior amygdaloid nucleusipsiCOAp1
Rostral portion of the cortical amygdalaipsiCAnRo-0.5
Nucleus of the lateral olfactory tractipsiLOT1
Nucleus of the lateral olfactory tract layer 3ipsiLOTL33
Periamygdaloid complexipsiPAC3
Periamygdaloid complex medial divisionipsiPACm-0.5
Medial amygdaloid nucleusipsiMe-0.5
Medial amygdaloid nucleus anteroventral partipsiMeAV1
Medial amygdaloid nucleus rostral partipsiMeRo-0.5
Amygdalostriatal transition areaipsiAStr-0.5
Intercalated massesipsiIM0
Intercalated nuclei of the amygdalaipsiI1
Lateral intercalated nucleusipsiLiM-0.5
ClaustrumipsiCl-0.5
Anterior part of the claustrumipsiACl1
Globus pallidusipsiGP2
Medial globus pallidusipsiMGP0.5
Ventral pallidumipsiVP3
Ventral pallidum dorsal partipsiVPd-1
Ventral pallidum lateral partipsiVPlp2
Accumbens nucleusipsiAc-0.5
Accumbens nucleus shellipsiAcbSh3
Lateral nucleus accumbensipsiAcl1
Caudate putamenipsiCPu1
Ventral striatumipsiCPuv0.5
Lateral stripe of the striatumipsiLSS-0.5
Fundus of the striatum caudal partipsiFSc1
Fundus of the striatum rostral partipsiFSr1
Hippocampal regionsipsiHIPPR-0.5
Anterior hippocampal formationipsiAHCf0.5
Dentate gyrusipsiDG-0.5
Field CA1 of hippocampusipsiCA14
Field CA1 of hippocampus dorsalipsiCA1d1
Field CA1 of hippocampus layer stratum pyramidaleipsiCA1pyr-0.5
Field CA1 of hippocampus layer stratum pyramidale deepipsiCA1L3spd-0.5
Intermediate third of the temporal extent of CA1ipsiCA1tit-0.5
Field CA1 of hippocampus temporal poleipsiCA1tp-0.5
Field CA1 of hippocampus ventral partipsiCA1v1
Field CA2 of hippocampusipsiCA23
Field CA3 of hippocampusipsiCA33
SubiculumipsiS3
Subiculum caudal partipsiScap2.5
Subiculum dorsal partipsiSd1
Subiculum ventral partipsiSv3
Parietal rhinal cortexipsiPaRH-0.5
Ventral hippocampusipsiHIPPv3
Parahippocampal regionipsiPHR3
Entorhinal cortexipsiEnt2.5
Dorsolateral entorhinal cortexipsiDLEnt3
Dorsolateral entorhinal cortex layer 3ipsiDLEntL3-0.5
Dorsolateral entorhinal cortex layer 4ipsiDLEntL4-0.5
Dorsolateral entorhinal cortex layer 2ipsiDLEntL2-0.5
Lateral entorhinal cortexipsiLEnt3
Lateral entorhinal cortex dorsal part layer 4ipsiLEntdL4-0.5
Lateral entorhinal cortex superficial layer 5ipsiLEntsL5-0.5
Lateral entorhinal cortex deep layer 5ipsiLEntL5b0.5
Lateral entorhinal cortex ventral partipsiVLEA3
Medial entorhinal cortexipsiMEnt-0.5
Medial entorhinal cortex layer 5aipsiMEntLyL5a-0.5
Medial entorhinal cortex deep layer 5ipsiMEntLyL5b0.5
Ventral intermediate entorhinal cortexipsiVIEnt-1
Ventrolateral entorhinal cortexipsiVLENT3
Ventrolateral entorhinal cortex anterior partipsiVLENTA1
Piriform cortexipsiPir2
Anterior piriform cortex layer 1ipsiAPIRCPIRlL1-3
Posterior piriform cortexipsiPPIRC1
Prepiriform cortexipsiPRPIR-0.5
Posterocaudal prepiriform cortexipsiPCPRPIR1
Rostral prepiriform cortexipsiRPRPIR-0.5
Ventromedial piriform cortexipsiPirVM-0.5
Cingulate cortexipsiCg3
Anterior cingulate cortexipsiACC2
Cingulate cortex area 1ipsiCg1-1
Cingulate cortex area 1 caudal partipsiCg1c1
Cingulate cortex area 2ipsiCg2-0.5
Dorsal anterior cingulate cortexipsiDACC-1
Dorsal anterior cingulate cortex superficial layersipsiDACCsL-0.5
Ventral anterior cingulate cortexipsiVACC-0.5
Prelimbic cortexipsiPrL3
Prelimbic cortex dorsal partipsiPrLd-1
Prelimbic cortex layer 2ipsiPrLL23
Prelimbic cortex layer 3ipsiPrLL33
Prelimbic cortex layer 5ipsiPrLL53
Prelimbic cortex layer 6ipsiPrLL6-0.5
Prelimbic cortex ventral partipsiPrLv-0.5
Infralimbic cortexipsiIL3
Infralimbic cortex layer 2ipsiILL23
Infralimbic cortex layer 5ipsiILL52
Infralimbic cortex layer 3ipsiILL33
Infralimbic cortex layer 4ipsiILL4-0.5
Frontal cortex area 2ipsiFr2-3
Temporal cortexipsiTE3
Temporal association area 2ipsiTe2-0.5
Temporal association area 2 dorsal partipsiTe2D1
Temporal association area 2 ventral partipsiTe2V-0.5
Temporal association cortex 1ipsiTeA1.5
Auditory regionsipsiAU-0.5
Primary auditory cortexipsiAu11.5
Secondary auditory cortexipsiAu21.5
Ventral auditory areasipsiAUDv-0.5
Insular cortexipsiICX2
Agranular insular cortexipsiAI3
Agranular insular cortex anterior partipsiAIA-0.5
Agranular insular cortex dorsal partipsiAID3
Agranular insular cortex layersipsiAIL-0.5
Agranular insular cortex layer 5ipsiAIL52
Agranular insular cortex layer 2ipsiAIL22
Agranular insular cortex layer 3ipsiAIL32
Agranular insular cortex rostral partipsiRAIC3
Agranular insular cortex posterior partipsiAIP1
Agranular insular cortex posterior part dorsal partipsiAIPpd1
Agranular insular cortex posterior deep layersipsiAIPdL1
Agranular insular cortex posterior part layer 5ipsiAIPL5-0.5
Agranular insular cortex ventral partipsiAIV3
Agranular insular cortex ventral part layer 2ipsiAIVL2-0.5
Agranular insular cortex ventral part layer 3ipsiAIVL3-0.5
Agranular insular cortex ventral part jaw movement areaipsiAIVjm-0.5
Anterior insular cortexipsiICXa1
Dysgranular insular cortexipsiDI-0.5
Dysgranular insular cortex layersipsiDIL-0.5
Dysgranular insular cortex layer 2ipsiDIL22
Dysgranular insular cortex layer 3ipsiDIL32
Dysgranular insular cortex layer 5ipsiDIL52
Gustatory dysgranular insular cortexipsiDIg1.5
Visceral dysgranular insular cortexipsiDIv1.5
Visceral dysgranular insular cortex layer 2ipsiDIvL21
Granular insular cortexipsiGI3
Insular cortex caudal partipsiICXca-0.5
Insular cortex posterior partipsiICXpo1
Insular sulcal areaipsiInCA-0.5
Perirhinal cortexipsiA353
Perirhinal cortex anterior portionipsiPRha3
Perirhinal cortex anterior portion layer 3 to layer 5ipsiPRhaL3L51
Perirhinal cortex anterior portion layer 5ipsiPRhaL52.5
Perirhinal cortex anterior portion layer 5 to layer 6ipsiPRhaL5L61
Perirhinal cortex anterior portion layer 6ipsiPRhaL64
Perirhinal cortex dorsal portionipsiPRhd-0.5
Ectorhinal cortexipsiA361.5
Dorsal peduncular cortexipsiDP1
Ventral peduncular cortexipsiPCv-1
Prefrontal cortexipsiPFC2
Frontal pole of prefrontal cortexipsiFPFC1
Lateral prefrontal cortexipsilPFC3
Lateral agranular prefrontal cortexipsiAGl-0.5
Jaw movement motor cortexipsiJMCx2.5
Medial prefrontal cortexipsimPFC3
Medial prefrontal cortex layer 5ipsimPFCL5-0.5
Medial prefrontal cortex layer 3ipsimPFCL3-0.5
Medial prefrontal cortex layer 2ipsimPFCL2-0.5
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS10.5
Secondary somatosensory cortexipsiS20.5
Secondary visual cortex lateral areaipsiV2L-1
Orbitofrontal cortexipsiOrFCx2
Anterior medial frontal cortexipsiAMFC2
Lateral orbital cortexipsiLO0.5
Medial orbital cortexipsiMO2
Ventral orbital cortexipsiVO1
Ventral orbital cortex layer 2ipsiVOL2-0.5
Ventral orbital cortex layer 3ipsiVOL3-0.5
Medial geniculate nucleusipsiMG-0.5
Medial geniculate nucleus medial partipsiMGM-0.5
Olfactory tubercleipsiTuO0.5
Septal regionipsiSER3
Lateral septal nucleus ventral partipsiLSV0.5
Lateral spinal nucleus C7ipsiLSpC70
Area X C7ipsiSCL10C70
Spinal cord layer 5 C7ipsiSCL5C70.5
Spinal cord layer 6 C7ipsiSCL6C70
Spinal cord layer 3 C7ipsiSCL3C70.5
Spinal cord layer 4 C7ipsiSCL4C70.5
Spinal cord layer 1 C7ipsiSCL1C70
Spinal cord layer 2 C7ipsiSCL2C70
Spinal cord layer 7 C7ipsiSCL7C70
Central graycontraCG0.5
Periventricular gray mattercontraPVG1
Ventral tegmental area A10contraVTA0
Laterodorsal tegmental nucleuscontraLDTg1
Dorsal tegmental nucleuscontraDTg1
Pedunculopontine tegmental nucleuscontraPPTg2
Locus coeruleuscontraLC2
Reticulotegmental nucleus of the ponscontraRtTg-0.5
Reticular systemcontraRF-0.5
Parabrachial nucleuscontraPB1
Koelliker Fuse nucleuscontraKF3
Parabrachial nucleus external divison lateral partcontraPBeDL1
Parabrachial nucleus medialcontraPBnMe1
Parabrachial nucleus ventral part lateral portioncontraPBVL1
Subcoeruleus nucleuscontraSubC2
Nucleus of the solitary tractcontraSol0.5
Nucleus of the solitary tract caudal partcontraSolca-0.5
Dorsal raphe nucleuscontraDR1
Median raphe nucleuscontraMnR1
B6 subnucleuscontraB60.5
Ventral lateral medulla oblongatacontraMVL2
Medulla oblongata dorsomedial partcontraMeObDM-0.5
Substantia innominatacontraSI0
Ventromedial hypothalamic nucleuscontraVMH0
Interoanteromedial thalamic nucleuscontraIAM-0.5
Midline group of the dorsal thalamuscontraMTN1
Paraventricular thalamic nucleuscontraPV1
Basal nucleuscontraBnc-0.5
Basolateral amygdaloid nucleuscontraBL1
Anterior basolateral nucleuscontraBLA1
Ventral basolateral nucleuscontraBLV1
Basomedial amygdaloid nucleuscontraBM1
Nucleus of the lateral olfactory tractcontraLOT-0.5
Nucleus of the lateral olfactory tract layer 3contraLOTL31
Medial amygdaloid nucleuscontraMe-0.5
Globus palliduscontraGP0
Ventral pallidumcontraVP0
Parasubthalamic nucleuscontraPSTh0
Field CA1 of hippocampus ventral partcontraCA1v0
Dorsal anterior cingulate cortexcontraDACC-1
Ventral anterior cingulate cortexcontraVACC0.5
Prelimbic cortexcontraPrL-0.5
Prelimbic cortex dorsal partcontraPrLd-1
Prelimbic cortex layer 2contraPrLL20.5
Prelimbic cortex layer 3contraPrLL30.5
Prelimbic cortex layer 5contraPrLL5-0.5
Prelimbic cortex layer 6contraPrLL6-0.5
Prelimbic cortex ventral partcontraPrLv-1
Infralimbic cortexcontraIL0.5
Infralimbic cortex layer 5contraILL5-0.5
Agranular insular cortexcontraAI1
Agranular insular cortex dorsal partcontraAID-1
Agranular insular cortex layerscontraAIL-0.5
Dysgranular insular cortexcontraDI1
Dysgranular insular cortex layerscontraDIL-0.5
Gustatory dysgranular insular cortexcontraDIg-1
Dorsal peduncular cortexcontraDP-1
Ventral peduncular cortexcontraPCv-1
Prefrontal cortexcontraPFC1
Jaw movement motor cortexcontraJMCx1
Medial prefrontal cortexcontramPFC-0.5
Medial agranular prefrontal cortexcontraAGm-1
Secondary visual cortex lateral areacontraV2L-1
Orbitofrontal cortexcontraOrFCx2.5
Lateral orbital cortexcontraLO0.5
Medial orbital cortexcontraMO-1
Spinal cord layer 5 C7contraSCL5C70.5
Spinal cord layer 3 C7contraSCL3C70.5
Spinal cord layer 4 C7contraSCL4C70.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications