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Rat connectome



Frontal association cortex layer 5 left


Abbreviation
FrALL5
Color       
Superior regionsFrontal association cortex deep layers

SynonymsAbbr.Language
Frontal association cortex layer 5FrALL5 

SubregionsSide
Frontal association cortex pyramidal cells of layer 5left
Frontal association cortex layer 5aleft
Frontal association cortex layer 5bleft
Frontal association cortex crossed corticostriatal cellleft
Frontal association cortex corticopontine cellleft
Frontal association cortex layer 5 GABA subtypesleft

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG3
Substantia nigra A9ipsiSN2
Inferior oliveipsiIO-0.5
Posterior hypothalamic nucleusipsiPH3
Centrolateral thalamic nucleusipsiCL3
Parafascicular thalamic nucleusipsiPF3
Posterior thalamic nuclear groupipsiPo1
Ventromedial thalamic nucleusipsiVM3
Ventromedial thalamic nucleus caudal partipsiVMc0.5
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt0.5
Posterior groupipsiPTG3
Reticular thalamic nucleus rostral partipsiRtr2
Pretectal regionipsiPRT2
Internal capsuleipsiic-2
Cerebral peduncle basal partipsicp-2
Globus pallidusipsiGP3
Caudate putamenipsiCPu3
Dorsomedial striatumipsiCPudm-0.5
Jaw region of the striatumipsiCPuJaw3
Frontal association cortex layer 2ipsiFrALL23
Frontal association cortex layer 3ipsiFrALL33
Parietal cortex posterior areaipsiParP-0.5
Primary somatosensory cortexipsiS1-0.5
Pyramidal decussationipsipyx-2
Spinal cordipsiMES-0.5
Bulbar pyramidalipsipyb-2
Cervical segment 1ipsiCS1-0.5
Cervical segment 2ipsiCS2-0.5
Cervical segment 3ipsiCS3-0.5
Cervical segment 4ipsiCS4-0.5
Cervical segment 5ipsiCS5-0.5
Cervical segment 6ipsiCS6-0.5
Cervical segment 7ipsiCS7-0.5
Cervical segment 8ipsiCS8-0.5
Thoracal segment 1ipsiT1-0.5
Thoracal segment 2ipsiT2-0.5
Thoracal segment 3ipsiT3-0.5
Thoracal segment 4ipsiT4-0.5
Thoracal segment 5ipsiT5-0.5
Thoracal segment 6ipsiT6-0.5
Thoracal segment 7ipsiT7-0.5
Thoracal segment 8ipsiT8-0.5
Thoracal segment 9ipsiT9-0.5
Thoracal segment 10ipsiT10-0.5
Thoracal segment 11ipsiT11-0.5
Thoracal segment 12ipsiT12-0.5
Thoracal segment 13ipsiT13-0.5
Periaqueductal graycontraPAG1.5
Inferior olivecontraIO-0.5
Posterior hypothalamic nucleuscontraPH0.5
Caudate putamencontraCPu3
Frontal association cortexcontraFrA3
Cervical segment 1contraCS1-0.5
Cervical segment 2contraCS2-0.5
Cervical segment 3contraCS3-0.5
Cervical segment 4contraCS4-0.5
Cervical segment 5contraCS5-0.5
Cervical segment 6contraCS6-0.5
Spinal cord layers C6contraSCLC63
Spinal cord layers C7contraSCLC73
Spinal cord layers C8contraSCLC83
Thoracal segment 1contraT1-0.5
Thoracal segment 2contraT2-0.5
Thoracal segment 3contraT3-0.5
Thoracal segment 4contraT4-0.5
Thoracal segment 5contraT5-0.5
Thoracal segment 6contraT6-0.5
Thoracal segment 7contraT7-0.5
Thoracal segment 8contraT8-0.5
Thoracal segment 9contraT9-0.5
Thoracal segment 10contraT10-0.5
Thoracal segment 11contraT11-0.5
Thoracal segment 12contraT12-0.5
Thoracal segment 13contraT13-0.5

Input from

NameSideAbbr.WeightDetails
Endopiriform systemipsiEnN0
Diagonal band of BrocaipsiDBB3
Centre median nucleusipsiCeMe1.5
Parafascicular thalamic nucleusipsiPF1.5
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt0.5
Dorsal part of claustrumipsiDCl3
Anterior part of the dorsal claustrumipsiAnDCl4
Insular cortexipsiICX3
Sensory regionsipsiSR3
Dorsal part of claustrumcontraDCl3
Motoric regionscontraM3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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