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Rat connectome

Primary somatosensory cortex hindlimb region left

Abbreviation	S1HL
Color
Superior regions	Primary somatosensory cortex nonorofascial part

Synonyms	Abbr.	Language
Primary somatosensory cortex hindlimb region	S1HL	Eng
	HL
Primary somatosensory cortex lower limb	SSp-ll	Eng
Hindlimb primary sensorimotor cortex		Eng

Subregions	Side
Primary somatosensory cortex hindlimb region anterior part	left
Primary somatosensory cortex hindlimb region lateral part	left
Primary somatosensory cortex hindlimb region medial part	left
Primary somatosensory cortex hindlimb region middle part	left
Primary somatosensory cortex hindpaws region	left
Primary somatosensory cortex hindlimb region layers	left
Primary somatosensory cortex hindlimb leg region	left
Primary somatosensory cortex hindlimb toe region	left
Primary somatosensory cortex distal hindlimb region	left
Primary somatosensory cortex proximal hindlimb region	left
Upper portion of the primary somatosensory cortex hindlimb region	left
Primary somatosensory cortex hindlimb stump representation	left
Primary somatosensory cortex hindlimb region caudal part	left
Primary somatosensory cortex hindlimb region rostral part	left
Primary somatosensory cortex hindlimb region posterior part	left
Hindpaw barrel subfield	left

Output to

Name	Side	Abbr.	Weight
Periaqueductal gray	ipsi	PAG	1.5
Medial pontine nucleus	ipsi	MPoN	1
Red nucleus	ipsi	R	-0.5
Red nucleus magnocellular part rostral sector	ipsi	RMCro	-0.5
Red nucleus parvicellular part	ipsi	ROC	-0.5
Optic nerve layer of the superior colliculus	ipsi	Op	0
Superficial gray layer of the superior colliculus	ipsi	SuG	0
Superior colliculus zonal layer	ipsi	SCzo	0
Intermediate gray layer of the superior colliculus	ipsi	InG	1
Intermediate gray layer of the posterolateral superior colliculus	ipsi	InGPL	1.5
Deep gray layer of the superior colliculus	ipsi	DpG	-0.5
Deep gray layer of the extreme posterolateral superior colliculus	ipsi	DpePLG	0.5
Superior colliculus medial part	ipsi	mSC	1
Superior colliculus medial boundary	ipsi	mbSC	0
Tegmental area	ipsi	TGA	-2
Dorsal peduncular pontine nucleus	ipsi	DPPn	-0.5
Peripeduncular nucleus ventral part	ipsi	PPv	-0.5
Rostralmost ventral peripeduncular nucleus	ipsi	PPvrm	-0.5
Culmen	ipsi	CUL	1
Caudal part of cerebellum	ipsi	CERCca	2
Deep cerebellar nuclei	ipsi	DNC	2.5
Flocculus	ipsi	Fl	1
Pons	ipsi	P	2
Barringtons nucleus	ipsi	Bar	0.5
Lateral pontine nucleus	ipsi	LPn	3
Locus coeruleus	ipsi	LC	0.5
Midline region of the pontine gray	ipsi	MiPG	1
Pontine gray caudal part	ipsi	PGCa	3
Ventral aspect of caudal pontine gray	ipsi	PGCaVe	3
Pontine gray rostral part	ipsi	PGro	3
Pontine nuclei	ipsi	Pn	-0.5
Pontine nuclei caudal part	ipsi	BPNc	-0.5
Caudal pole region of the pontine nuclei	ipsi	BPNcP	-0.5
Pontine nuclei lateral part	ipsi	BPNL	-0.5
Pontine nuclei medial lateral zones	ipsi	PnML	3
Most rostral level of the pontine nuclei	ipsi	MroLBPNr	1
Pontine nucleus medial part	ipsi	BPNm	-0.5
Pontine nucleus ventral part	ipsi	BPNv	3
Pontine reticular nucleus	ipsi	PRN	1.5
Mesencephalic trigeminal nucleus	ipsi	Me5	0.5
Mesencephalic trigeminal nucleus medial part	ipsi	periMe5	0.5
Spinal vestibular nucleus rostral part	ipsi	SpVeR	-1
Midline raphe nuclei	ipsi	MRAN	1
Dorsal aspect of the rostral medial accessory olive at mid olivary level	ipsi	IODLmoL	3
Inferior olive subnucleus A of medial nucleus	ipsi	IOA	2
Inferior olive medial nucleus caudolateral part	ipsi	IOMcL	1.5
Inferior olive principal nucleus ventral leaf	ipsi	IOPrvl	1.5
Centrolateral thalamic nucleus	ipsi	CL	-0.5
Parafascicular thalamic nucleus	ipsi	PF	-0.5
Posterior thalamic nuclear group	ipsi	Po	-0.5
Lateral part of the medial part of posterior thalamic nuclear group	ipsi	PoML	-0.5
Posterior thalamic nuclear group dorsal part	ipsi	PoDo	-0.5
Ventro anterior thalamic nucleus	ipsi	VA	1
Ventrolateral thalamic nucleus	ipsi	VL	2
Ventral posterior thalamic complex lateral part	ipsi	VPTL	3
Ventral posterior thalamic complex medial part	ipsi	VPTm	3
Ventrobasal complex	ipsi	VB	2
Ventral posterolateral thalamic nucleus	ipsi	VPL	3
Ventrobasal complex lateral part	ipsi	VBL	-0.5
Intralaminar nuclei	ipsi	ILN	-0.5
Medial laterodorsal thalamic nucleus rostromedial laterodorsal thalamic nucleus transition region	ipsi	LDmLDmrt	1
Reticular thalamic nucleus	ipsi	Rt	-0.5
Reticular thalamic nucleus dorsal part	ipsi	RtD	1
Lateral part of the reticular thalamic nucleus external part	ipsi	RtexL	3
Anterior pretectal nucleus	ipsi	APT	-0.5
Cerebral peduncle basal part	ipsi	cp	-2
Lateral part of crus cerebri	ipsi	cpL	-2
Striatum	ipsi	STR	-0.5
Caudate putamen	ipsi	CPu	3
Dorsomedial striatum	ipsi	CPudm	2
Dorsomedial striatum rostral part	ipsi	CPudmr	2
Medial striatum	ipsi	CPum	2
Central striatum	ipsi	CPuce	2
Dorsocentral striatum	ipsi	DCS	1
Dorsolateral striatum	ipsi	CPudl	2
Dorsolateral striatum dorsal part	ipsi	CPudlD	3
Rostral striatum dorsolateral part	ipsi	CPurDL	-0.5
Cingulate cortex area 1 caudal part	ipsi	Cg1c	1
Cingulate cortex area 2 caudal part	ipsi	Cg2c	1
Prelimbic cortex	ipsi	PrL	1
Infralimbic cortex	ipsi	IL	1
Frontal association cortex	ipsi	FrA	-0.5
Parietal cortex ventral area layer 5	ipsi	ParVL5	1.5
Parietal cortex ventral area layer 6	ipsi	ParVL6	1.5
Parietal cortex ventral area layer 4	ipsi	ParVL4	1
Parietal cortex ventral area layer 1	ipsi	ParVL1	0.5
Parietal cortex ventral area layer 2	ipsi	ParVL2	0.5
Parietal cortex ventral area layer 3	ipsi	ParVL3	1
Lateral agranular prefrontal cortex	ipsi	AGl	-0.5
Elbow flexion motor cortex	ipsi	EFMCx	1
Ankle dorsiflexion motor cortex	ipsi	ADFMCx	3
Ankle plantar flexion motor cortex	ipsi	APFMCx	3
Hindlimb motor cortex caudal part	ipsi	HMCxC	3
Hip flexion motor cortex	ipsi	HFMCx	2
Rostral whisker motor area	ipsi	RWMA	-0.5
Medial prefrontal cortex layer 5	ipsi	mPFCL5	3
Medial prefrontal cortex layer 6	ipsi	mPFCL6	3
Medial prefrontal cortex layer 3	ipsi	mPFCL3	3
Medial prefrontal cortex layer 4	ipsi	mPFCL4	3
Medial agranular prefrontal cortex	ipsi	AGm	1
Primary somatosensory cortex medial intercalated zone	ipsi	S1iZm	-0.5
Primary somatosensory cortex forelimb region	ipsi	S1FL	1
Primary somatosensory cortex forelimb stump representation	ipsi	S1FLS	0.5
Leg region of the primary somatosensory cortex layer 1	ipsi	S1FLeL1	3
Leg region of the primary somatosensory cortex layer 2	ipsi	S1FLeL2	3
Leg region of the primary somatosensory cortex layer 3	ipsi	S1FLeL3	3
Leg region of the primary somatosensory cortex layer 4	ipsi	S1FLeL4	2.5
Leg region of the primary somatosensory cortex layer 5	ipsi	S1FLeL5	2.5
Leg region of the primary somatosensory cortex layer 6	ipsi	S1FLeL6	2.5
Primary somatosensory cortex hindlimb region	ipsi	S1HL	3
Secondary somatosensory cortex	ipsi	S2	2
Secondary somatosensory cortex layer 1	ipsi	S2L1	0.5
Secondary somatosensory cortex layer 2	ipsi	S2L2	0.5
Secondary somatosensory cortex layer 3	ipsi	S2L3	0.5
Secondary somatosensory cortex layer 4	ipsi	S2L4	0.5
Secondary somatosensory cortex layer 5	ipsi	S2L5	1
Secondary somatosensory cortex layer 6	ipsi	S2L6	1
Medial dysgranular cortex	ipsi	MdyC	3
Orbital cortex	ipsi	OrC	-0.5
Commissural systems	ipsi	cos	0.5
Dorsal geniculate nucleus lateral part	ipsi	DLGl	0
Ventral horn of spinal cord	ipsi	VHMES	-0.5
Intermediate gray layer of the superior colliculus	contra	InG	0
Superior colliculus medial part	contra	mSC	0
Culmen	contra	CUL	2
Caudal part of cerebellum	contra	CERCca	1
Ventral region of the ventral part of the pontine nucleus	contra	VBPNv	-0.5
Spinal vestibular nucleus rostral part	contra	SpVeR	1.5
Cuneate nucleus	contra	Cu	-0.5
Gracile	contra	Gra	-0.5
Inferior olive dorsal nucleus	contra	IOD	1
Inferior olive principal nucleus ventral leaf	contra	IOPrvl	1
Ventrolateral thalamic nucleus	contra	VL	2
Ventrobasal complex	contra	VB	2
Striatum	contra	STR	2
Dorsomedial striatum	contra	CPudm	1
Dorsomedial striatum rostral part	contra	CPudmr	1
Medial striatum	contra	CPum	1
Dorsolateral striatum	contra	CPudl	2
Dorsolateral striatum dorsal part	contra	CPudlD	2
Frontal cortex area 1	contra	Fr1	2
Medial prefrontal cortex layer 5	contra	mPFCL5	1.5
Medial prefrontal cortex layer 6	contra	mPFCL6	1.5
Medial prefrontal cortex layer 3	contra	mPFCL3	1.5
Medial prefrontal cortex layer 4	contra	mPFCL4	1.5
Primary somatosensory cortex forelimb region	contra	S1FL	2
Primary somatosensory cortex hindlimb region	contra	S1HL	2
Secondary somatosensory cortex	contra	S2	2
Lumbar segments	contra	LSeg	-0.5
Lumbar segment 4	contra	L4	-0.5
Lumbar segment 5	contra	L5	-0.5
Lumbar segment 6	contra	L6	-0.5
Sacral segment 1	contra	Sa1	-0.5
Ventral horn of spinal cord	contra	VHMES	3

Input from

Name	Side	Abbr.	Weight
Basal nucleus Meynert	ipsi	B	-3
Central medial thalamic nucleus	ipsi	CM	2
Centrolateral thalamic nucleus	ipsi	CL	2
Paracentral thalamic nucleus	ipsi	PC	2
Posterior thalamic nuclear group	ipsi	Po	3
Mediodorsal part of posterior thalamic nuclear group	ipsi	Pomd	2
Posterior thalamic nuclear group dorsal part	ipsi	PoDo	3
Ventral anterior-lateral complex of the thalamus	ipsi	VAL	3
Ventro anterior thalamic nucleus	ipsi	VA	2
Ventrolateral thalamic nucleus	ipsi	VL	3
Ventrobasal complex	ipsi	VB	3
Ventral posterolateral thalamic nucleus	ipsi	VPL	3
Lateral posterior thalamic nucleus	ipsi	LP	2
Laterodorsal thalamic nucleus	ipsi	LD	2
Laterodorsal thalamic nucleus ventrolateral part medial region	ipsi	LDVLm	1
Reticular thalamic nucleus dorsal part	ipsi	RtD	3
Frontal cortex area 1	ipsi	Fr1	-1
Frontal cortex area 2	ipsi	Fr2	-1
Parietal cortex posterior area	ipsi	ParP	-1
Parietal cortex area 1	ipsi	Par1	2
Parietal cortex area 2	ipsi	Par2	2.5
Parietal cortex ventral area layer 5	ipsi	ParVL5	1.5
Parietal cortex ventral area layer 6	ipsi	ParVL6	1.5
Parietal cortex ventral area layer 4	ipsi	ParVL4	1
Parietal cortex ventral area layer 1	ipsi	ParVL1	0.5
Parietal cortex ventral area layer 2	ipsi	ParVL2	0.5
Parietal cortex ventral area layer 3	ipsi	ParVL3	1
Agranular insular cortex	ipsi	AI	2
Perirhinal cortex	ipsi	A35	2
Primary somatosensory cortex medial intercalated zone	ipsi	S1iZm	-0.5
Primary somatosensory cortex forelimb region	ipsi	S1FL	0
Primary somatosensory cortex hindlimb region	ipsi	S1HL	3
Primary somatosensory cortex hindlimb leg region layer 2	ipsi	S1HLLeL2	3
Primary somatosensory cortex hindlimb leg region layer 3	ipsi	S1HLLeL3	3
Primary somatosensory cortex hindlimb leg region layer 4	ipsi	S1HLLeL4	2
Primary somatosensory cortex hindlimb leg region layer 5	ipsi	S1HLLeL5	1.5
Primary somatosensory cortex hindlimb leg region layer 6	ipsi	S1HLLeL6	1.5
Secondary somatosensory cortex caudal part	ipsi	S2C	-0.5
Secondary somatosensory cortex layer 1	ipsi	S2L1	0.5
Secondary somatosensory cortex layer 2	ipsi	S2L2	0.5
Secondary somatosensory cortex layer 3	ipsi	S2L3	0.5
Secondary somatosensory cortex layer 4	ipsi	S2L4	0.5
Secondary somatosensory cortex layer 5	ipsi	S2L5	1
Secondary somatosensory cortex layer 6	ipsi	S2L6	1
Medial geniculate nucleus	ipsi	MG	-1
Frontal cortex area 1	contra	Fr1	2
Frontal cortex area 2	contra	Fr2	2
Frontal cortex area 3	contra	Fr3	2
Primary somatosensory cortex	contra	S1	0
Primary somatosensory cortex forelimb region	contra	S1FL	2
Primary somatosensory cortex hindlimb region	contra	S1HL	2
Lumbar segment 1	contra	L1	3
Lumbar segment 2	contra	L2	3
Lumbar segment 3	contra	L3	3

Key for weights

Value	Weight
-3	unknown
-2	fibers of passage
-1	not clear
-0.5	exists
0	not present
0.5	very light
1	light / sparse
1.5	light / moderate
2	moderate / dense
2.5	moderate / strong
3	strong
4	very strong