University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Striatal matrix compartment left


Abbreviation
SMC
Color       
Superior regionsCaudate putamen

SynonymsAbbr.Language
Caudate putamen matrix  
Striatal matrix compartmentSMCEng

Output to

NameSideAbbr.WeightDetails
Substantia nigra compact partipsiSNC0
Substantia nigra reticular partipsiSNR3
Globus pallidusipsiGP-0.5
Medial globus pallidusipsiMGP-0.5

Input from

NameSideAbbr.WeightDetails
Substantia nigra compact partipsiSNC-0.5
Substantia nigra compact part dorsal tieripsiSNCD-0.5
Substantia nigra compact part ventral tieripsiSNCV-0.5
Substantia nigra compact part ventral tier dopaminergic neuron populationipsiSNCVdopa0.5
Substantia nigra reticular partipsiSNR-0.5
Ventral tegmental area A10ipsiVTA-0.5
Retrorubral nucleusipsiRR-0.5
Central medial thalamic nucleusipsiCM-0.5
Centrolateral thalamic nucleusipsiCL-0.5
Paracentral thalamic nucleusipsiPC-0.5
Parafascicular thalamic nucleusipsiPF-0.5
Rhomboid thalamic nucleusipsiRh-0.5
Intermediodorsal thalamic nucleusipsiIMD-0.5
Paratenial thalamic nucleusipsiPT-0.5
Paraventricular thalamic nucleusipsiPV-0.5
Medial globus pallidus caudal partipsiMGPc3
Cingulate cortexipsiCg-0.5
Anterior cingulate cortexipsiACC-0.5
Cingulate cortex layer 3ipsiCgL32
Cingulate cortex layer 5 bipsiCgL5b1
Cingulate cortex layer 6ipsiCgL61
Lateral agranular prefrontal cortexipsiAGl-0.5
Lateral agranular prefrontal cortex layer 3ipsiAGlL32
Lateral agranular prefrontal cortex layer 5aipsiAGlL5a2
Lateral agranular prefrontal cortex layer 5bipsiAGlL5b2
Lateral agranular prefrontal cortex layer 6ipsiAGlL61
Medial agranular prefrontal cortex layer 3ipsiAGmL30
Medial agranular prefrontal cortex layer 5 aipsiAGmL5a3
Medial agranular prefrontal cortex layer 5 bipsiAGmL5b1
Medial agranular prefrontal cortex layer 6ipsiAGmL60
Primary somatosensory cortexipsiS1-0.5
Primary somatosensory cortex layer 5 aipsiS1L5a3
Primary somatosensory cortex layer 5 bipsiS1L5b0
Primary somatosensory cortex layer 6ipsiS1L60
Primary somatosensory cortex layer 4ipsiS1L43
Primary somatosensory cortex layer 3ipsiS1L32
Primary visual cortexipsiV1-0.5
Cingulate cortexcontraCg-0.5
Lateral agranular prefrontal cortexcontraAGl-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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