University of Rostock

Department of Anatomy

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Rat connectome



Substantia nigra compact part dorsal tier left


Abbreviation
SNCD
Color       
Superior regionsSubstantia nigra compact part

SynonymsAbbr.Language
Substantia nigra compact part dorsal tierSNCDEng
Substantia nigra pars compacta dorsal part  
Dorsal tier substantia nigra pars compacta  
Substantia nigra compact part dorsal division Eng

SubregionsSide
Extreme dorsal layers of the substantia nigra compact partleft
Substantia nigra compact part dorsal tier intermediate subdivisionleft
Substantia nigra compact part dorsal tier lateral subsivisionleft
Substantia nigra compact part dorsal tier medial divisionleft
Substantia nigra compact part dorsal surfaceleft

Output to

NameSideAbbr.WeightDetails
Nucleus of DarkschewitschipsiDk0
Oculomotor nucleusipsi33
Substantia nigra reticular part dorsal tieripsiSNRD2
Edinger Westphal nucleusipsiEW2
Paragigantocellular reticular nucleusipsiPGi1
Central medial thalamic nucleusipsiCM1
Parafascicular thalamic nucleus rostral partipsiPFr1
Mediodorsal thalamic nucleusipsiMD2
Ventromedial thalamic nucleusipsiVM2
Reticular thalamic nucleus ventral partipsiRtV2
Zona incerta rostral partipsiZIR1
Amygdaloid complexipsiAC3
Basolateral amygdaloid nucleusipsiBL2
Lateral amygdaloid nucleusipsiLA3
Bed nucleus of the stria terminalisipsiBST0.5
Central amygdaloid nucleusipsiCe1
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC1
Sublenticular extended amygdalaipsiSLEA1
Medial amygdaloid nucleusipsiMe3
Globus pallidusipsiGP2
Caudal globus pallidusipsiGPc2
Medial globus pallidusipsiMGP-0.5
Medial globus pallidus lateral partipsiMGPl1
Medial globus pallidus medial partipsiMGPm2
Rostral globus pallidusipsiGPr2
Ventral pallidumipsiVP2
Ventral pallidum dorsolateral partipsiVPdl2
Ventral pallidum ventromedial partipsiVPvm1
Accumbens nucleus shellipsiAcbSh0.5
Caudate putamenipsiCPu3
Caudal striatum ventrolateral partipsiCPuVL3
Central caudal striatumipsiCPucc-0.5
Central striatumipsiCPuce2
Dorsal striatumipsiCPud3
Dorsal striatum matrix compartmentipsiCPudMat-0.5
Rostral striatumipsiCPur2
Striatal matrix compartmentipsiSMC-0.5
Striatal patch compartmentipsiSPC-0.5
Subcallosal streakipsiSCS-0.5
Ventral striatumipsiCPuv2
Ventrolateral striatumipsiCPuvl2
Ventromedial striatumipsiCPuvm2
Lateral striatumipsiCPul3
Fundus of the striatumipsiFS2
Olfactory tubercle lateral partipsiTuOL-0.5
Locus coeruleus rostral partcontraLCRo1
Dorsal raphe nucleus median partcontraDRM1
Paragigantocellular reticular nucleuscontraPGi-0.5

Input from

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG2
Superior colliculusipsiSC0.5
Tegmental areaipsiTGA2
Peduncularpontine nucleusipsiPPN2
Rostromedial tegmental nucleusipsiRMTg2
Substantia nigra compact part dorsal tier medial divisionipsiSNCDm-0.5
Pedunculopontine tegmental nucleus pars compactaipsiPPNC-0.5
Dorsal raphe nucleusipsiDR2
Median raphe nucleusipsiMnR2
Superior central raphe nucleusipsiCS2
Tuberomammillary nucleus dorsomedial partipsiTBMdm2
Tuberomammillary nucleus ventrolateral partipsiTBMvl3
Bed nucleus of the stria terminalisipsiBST2
Central amygdaloid nucleusipsiCe2
Globus pallidusipsiGP2
Accumbens nucleus coreipsiAcbC2
Rostral coreipsiAcbCr2
Medial accumbens shellipsiAcbShm-0.5
Rostral accumbens shellipsiAcbShr2
Ventral shellipsiAcbShv-0.5
Caudal striatumipsiCPuc1
Dorsal striatumipsiCPud2
Parasubthalamic nucleusipsiPSTh4
Subthalamic nucleus medial capipsiSThMc-0.5
Rostromedial tegmental nucleuscontraRMTg1.5
Tuberomammillary nucleus dorsomedial partcontraTBMdm1
Tuberomammillary nucleus ventrolateral partcontraTBMvl3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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