University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Substantia nigra compact part ventral tier left


Abbreviation
SNCV
Color       
Superior regionsSubstantia nigra compact part

SynonymsAbbr.Language
Substantia nigra compact part ventral tierSNCVEng
Substantia nigra pars compacta ventral part  

SubregionsSide
Substantia nigra compact part ventral tier dopaminergic neuron populationleft
Substantia nigra compact part ventral one-halfleft

Output to

NameSideAbbr.WeightDetails
Substantia nigra reticular part caudal tieripsiSNRca2
Substantia nigra reticular part dorsal tieripsiSNRD2
Substantia nigra reticular part dorsocaudal tieripsiSNRdc2
Substantia nigra reticular part rostral tieripsiSNRro2
Substantia nigra reticular part rostroventral tieripsiSNRrv1
Retrorubral nucleus dorsal partipsiRRdo1
Pedunculopontine tegmental nucleusipsiPPTg2
Nucleus subincertusipsiNSI-0.5
Deep mesencephalic nucleusipsiDpMe2
Pontine reticular nucleusipsiPRN1
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
A8 dopamine cells retrorubral groupipsiRRF-0.5
Anteromedial thalamic nucleusipsiAM2
Central medial thalamic nucleusipsiCM2
Paracentral thalamic nucleusipsiPC2
Ventrolateral thalamic nucleusipsiVL2
Ventromedial thalamic nucleusipsiVM2
Reticular thalamic nucleusipsiRt-0.5
Reticular thalamic nucleus lateral partipsiRtL-0.5
Reticular thalamic nucleus ventral partipsiRtV2
Ventral medial nucleus of the thalamusipsiVMT-0.5
Zona incertaipsiZI-0.5
Nucleus of the fields of ForelipsiF2
Zona incerta caudal partipsiZIC2
Internal capsuleipsiic-0.5
Basolateral amygdaloid nucleusipsiBL2
Extended amygdalaipsiEXA2
Bed nucleus of the stria terminalisipsiBST0.5
Central amygdaloid nucleusipsiCe2
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC0.5
Sublenticular extended amygdalaipsiSLEA1
Medial division of the sublenticular extended amygdalaipsiSLEAm-1
Intercalated massesipsiIM-0.5
Globus pallidusipsiGP2
Caudal globus pallidusipsiGPc2
Medial globus pallidusipsiMGP1
Medial globus pallidus rostral partipsiMGPr2
Ventral pallidumipsiVP2
Accumbens nucleus shellipsiAcbSh0.5
Caudate putamenipsiCPu2
Caudal striatum matrix compartmentipsiCPucaMat-0.5
Caudodorsal striatumipsiCPucd2
Dorsal striatumipsiCPud2
Dorsolateral striatum matrix compartmentipsiCPudlMat-0.5
Rostral striatumipsiCPur2
Caudate putamen rostrobasal partipsiCPurb-0.5
Rostrocaudal region of the caudate putamenipsiRCCPu-0.5
Striatal matrix compartmentipsiSMC-0.5
Striatal patch compartmentipsiSPC-0.5
Subcallosal streakipsiSCS-0.5
Transition area between striatum and globus pallidusipsiTSGP-0.5
Subthalamic nucleus caudal partipsiSThc2
Subthalamic nucleus rostral partipsiSThr2
Piriform cortexipsiPir-0.5
Frontal cortex area 2 deep gray matter layersipsiFr2dLa-0.5
Olfactory tubercleipsiTuO-0.5

Input from

NameSideAbbr.WeightDetails
Peduncularpontine nucleusipsiPPN-0.5
Substantia nigra compact part dorsal tier medial divisionipsiSNCDm-0.5
Laterodorsal tegmental nucleusipsiLDTg-0.5
Dorsal raphe nucleus rostral partipsiDRr2
Tuberomammillary nucleus dorsomedial partipsiTBMdm2
Tuberomammillary nucleus ventrolateral partipsiTBMvl3
Accumbens nucleusipsiAc2
Subcallosal streakipsiSCS-0.5
Ventral striatumipsiCPuv2
Tuberomammillary nucleus dorsomedial partcontraTBMdm1
Tuberomammillary nucleus ventrolateral partcontraTBMvl3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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