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Rat connectome



Trigeminal subnucleus caudalis right


Abbreviation
5SSC
Color       
Superior regionsNuclei of the trigeminal complex

SynonymsAbbr.Language
Medullary dorsal horn  
Trigeminal brainstem nucleus caudalis Eng
Trigeminal subnucleus caudalis5SSCEng
Nucleus caudalisSpVcEng
Trigeminal nucleus caudalis Eng
Pars caudalis of the trigeminal brainstem nuclear complex Eng
Subnucleus caudalis of the trigeminal complex Eng

SubregionsSide
Magnocellular laminae of the trigeminal nucleus caudalisright
Medial margin of the trigeminal subnucleus caudalisright
Trigeminal subnucleus caudalis rostral partright
Ventrolateral of the trigeminal subnucleus caudalisright
Dorsal part of the pars caudalis of the trigeminal nucleusright
Trigeminal subnucleus caudalis layersright
Laminated part of the subnucleus caudalis marginal zoneright
Laminated part of the subnucleus caudalis substantia gelatinosaright
Trigeminal subnucleus caudalis ventral partright
Trigeminal subnucleus caudalis deep dorsal hornright
Ventrocaudal part of the caudal trigeminal subnucleusright
Trigeminal subnucleus caudalis middle partright
Trigeminal subnucleus caudalis caudal partright
Trigeminal subnucleus caudalis dorsomedial partright
Mid-trigeminal subnucleus caudalisright
Trigeminal subnucleus caudalis rostrocaudal levelsright
Dorsoventral extent of the trgemincal subnucleus caudalisright

Output to

NameSideAbbr.WeightDetails
Superior colliculuscontraSC0.5
Superior colliculus intermediate white layercontraSAI1.5
Superior colliculus intermediate layerscontraSCi1
Intermediate gray layer of the superior colliculuscontraInG3
Intermediate white layer of the superior colliculuscontraInWh3
Lateral portion of the intermediate white layer of the superior colliculuscontraInWhL2
Lateral part of the stratum griseum intermediale of the superior colliculuscontraSCiL-0.5
Deep gray layer of the superior colliculuscontraDpG3
Lateral portion of the deep gray layer of the superior colliculuscontraDpGL2
Deep white layer of the superior colliculuscontraDpWh3
Lateral portion deep white layer of the superior colliculuscontraDpWhL1.5
Superior colliculus medial partcontramSC1
Mesopontine reticular formationcontraMPRF-0.5
Parabrachial nucleuscontraPB2
Koelliker Fuse nucleuscontraKF1
Caudal Koelliker Fuse nucleuscontraKFc1
Lateral parabrachial nucleuscontraLPB1
Medullary reticular nucleuscontraMdD-0.5
Parvicellular reticular nucleuscontraPCRt-0.5
Accessory abducens nucleuscontraACVI0.5
Dorsal portion of the facial motor nucleuscontra7D0.5
Around facial nucleuscontra7A-0.5
Supratrigeminal nucleus surrounding areacontraSUTsur-0.5
Motor trigeminal nucleus surrounding regioncontraMo5sur-0.5
Motor trigeminal nucleus jaw closing componentcontraMo5jcc0.5
Motor trigeminal nucleus jaw opening componentcontraMo5joc-0.5
Nucleus of the solitary tractcontraSol-0.5
Cuneate nucleuscontraCu3
Tuberomammillary nucleuscontraTuM2
Dorsomedial hypothalamic nucleuscontraDMHy2
Preoptic anterior regioncontraPAreg2
Lateral hypothalamic areacontraLH2
Medial division of the hypothalamuscontraMdH0.5
Anterior hypothalamic areacontraAHA2
Posterior hypothalamic areacontraPHA2
Ventromedial hypothalamic nucleuscontraVMH2
Arcuate nucleuscontraArc2
Paraventricular hypothalamic nucleuscontraPa2
Periventricular hypothalamic nucleuscontraPe2
Suprachiasmatic nucleuscontraSCh2
Supraoptic nucleus [Supraoptic region]contraSO2
Mammillary bodycontraCMAM2
ThalamuscontraT0.5
Lateral group of the dorsal thalamuscontraLAT2
Submedius thalamic nucleus dorsal partcontraSubD1
Ventral posteromedial thalamic nucleuscontraVPM3
Posterior groupcontraPTG2
Dysgranular insular cortex caudal partcontraDIc3
Granular insular cortex caudal partcontraGIC3
Forelimb motor cortexcontraFMCx2
Caudal forelimb motor areacontraCFMA2
Lateral part of the granular cortex of forelimb motor regionscontraLFMCx2
Lumbar segment 2contraL22
Central grayipsiCG-0.5
Periaqueductal grayipsiPAG-0.5
Inferior colliculusipsiICOL-0.5
Superior colliculusipsiSC0
Tegmental areaipsiTGA-0.5
Paravermis areaipsiCERCPA-0.5
VermisipsiVERM-0.5
Probst bundleipsiprb-2
Dorsal reticular formationipsiDRF-0.5
Intermediate reticular nucleusipsiIRt-0.5
Mesopontine reticular formationipsiMPRF-0.5
Cuneiforme nucleusipsiCnF-0.5
Parabrachial nucleusipsiPB3
Koelliker Fuse nucleusipsiKF3
Caudal Koelliker Fuse nucleusipsiKFc3
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus external partipsiLPBE1.5
Lateral parabrachial nucleus internal partipsiLPBI0
Lateral parabrachial nucleus ventrolateral partipsiLPBVL-0.5
Parabrachial nucleus external divison lateral partipsiPBeDL0.5
Parabrachial nucleus medialipsiPBnMe0.5
Medial parabrachial nucleus external partipsiMPBE0.5
Medullary reticular nucleusipsiMdD-0.5
Parvicellular reticular nucleusipsiPCRt-0.5
Parvicellular reticular nucleus alpha partipsiPCRtA-0.5
Accessory abducens nucleusipsiACVI-0.5
Dorsal portion of the facial motor nucleusipsi7D0.5
Around facial nucleusipsi7A-0.5
Supratrigeminal nucleusipsiSu5-0.5
Supratrigeminal nucleus surrounding areaipsiSUTsur-0.5
Motor trigeminal nucleusipsiMo5-0.5
Motor trigeminal nucleus surrounding regionipsiMo5sur-0.5
Motor trigeminal nucleus jaw closing componentipsiMo5jcc1
Motor trigeminal nucleus jaw opening componentipsiMo5joc0.5
Principal sensory trigeminal nucleusipsiPr53
Spinal trigeminal nucleus interpolar part dorsomedial partipsiSp5IDM-0.5
Dorsomedial portion of the spinal trigeminal nucleus oral partipsiSp5ODM-0.5
Trigeminal subnucleus caudalis lamina 1ipsi5SSCL13
Trigeminal subnucleus caudalis lamina 2iipsi5SSCL2i3
Trigeminal subnucleus caudalis lamina 2oipsi5SSCL2o1.5
Trigeminal subnucleus caudalis lamina 3ipsi5SSCL33
Trigeminal subnucleus caudalis lamina 4ipsi5SSCL43
Trigeminal subnucleus caudalis lamina 5ipsi5SSCL51
Trigeminal ganglionipsi5Gn-0.5
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract caudal partipsiSolca1
Nucleus of the solitary tract medial partipsiSolM1
Nucleus of the solitary tract rostral partipsiSolro0
Nucleus of the solitary tract rostrolateral partipsiSolRL0
Cuneate nucleusipsiCu1
Tuberomammillary nucleusipsiTuM2
Dorsomedial hypothalamic nucleusipsiDMHy2
Preoptic anterior regionipsiPAreg2
Lateral hypothalamic areaipsiLH2
Medial division of the hypothalamusipsiMdH0.5
Anterior hypothalamic areaipsiAHA2
Posterior hypothalamic areaipsiPHA2
Ventromedial hypothalamic nucleusipsiVMH2
Arcuate nucleusipsiArc2
Paraventricular hypothalamic nucleusipsiPa2
Periventricular hypothalamic nucleusipsiPe2
Suprachiasmatic nucleusipsiSCh2
Supraoptic nucleus [Supraoptic region]ipsiSO2
Mammillary bodyipsiCMAM2
ThalamusipsiT0.5
Centrolateral thalamic nucleusipsiCL1
Parafascicular thalamic nucleusipsiPF1
Lateral group of the dorsal thalamusipsiLAT1
Mediodorsal thalamic nucleus medial partipsiMDM1
Submedius thalamic nucleusipsiSub-0.5
Submedius thalamic nucleus dorsal partipsiSubD2
Ventrobasal complexipsiVB3
Ventral posteromedial thalamic nucleusipsiVPM1
Ventrobasal complex anterior partipsiVBa-0.5
Oval paracentral thalamic nucleusipsiOPC-0.5
Zona incertaipsiZI3
Central amygdaloid nucleusipsiCe-1
Central amygdaloid nucleus lateral divisionipsiCeL1
Posteromedial barrel subfield C1ipsiPMBSFC11
Posteromedial barrel subfield C1 mediolateral partipsiPMBSFC1mL1
Posteromedial barrel subfield C1 dorsoventral partipsiPMBSFC1dv1
Dorsal horn C1ipsiDHC12.5
Spinal cord layer 1 C1ipsiSCL1C10
Spinal cord layer 2 C1ipsiSCL2C10
Dorsal horn C1 rostrocaudal columnipsiDHC1rcc2.5
Dorsal horn C1 magnocellular zoneipsiDHC1mc2.5
Lumbar segment 2ipsiL22

Input from

NameSideAbbr.WeightDetails
Rostral to the nucleus of DarkschewitschcontraRVMMM-0.5
Spinal trigeminal nucleuscontraSp5nc0.5
Mandibular region of the trigeminal ganglioncontra5GnMa2
Raphe magnus nucleuscontraRMg3
Raphe obscurus nucleuscontraROb1
Raphe pallidus nucleuscontraRPa2
Paragigantocellular reticular nucleuscontraPGi-0.5
Forelimb motor cortexcontraFMCx2
Caudal forelimb motor areacontraCFMA2
Lateral part of the granular cortex of forelimb motor regionscontraLFMCx2
Primary somatosensory cortexcontraS13
Primary somatosensory cortex rostral most partcontraS1rm-0.5
Dorsal root ganglion C2contraDRGC21
Dorsal root ganglion C3contraDRGC31
Dorsal root ganglion C4contraDRGC41
Dorsal root ganglion C5contraDRGC51
Rostral to the nucleus of DarkschewitschipsiRVMMM0.5
Prepositus nucleusipsiPr-0.5
Ventral reticular formationipsiVRF-0.5
Spinal trigeminal nucleusipsiSp5nc1
Sensory root of the trigeminal nerveipsiS5-0.5
Trigeminal ganglionipsi5Gn3
Mandibular region of the trigeminal ganglionipsi5GnMa4
Mandibular region of the trigeminal ganglion at the level of the entry of the mandibular nerveipsi5GnMaEm3
Caudal area of the ophthalmomaxillary region of the trigeminal ganglionipsi5GnCOM3
Rostral area of the ophthalmomaxillary region of the trigeminal ganglionipsi5GnROM3
Superficial part of the trigeminal ganglionipsi5GnS3
Vestibular nucleiipsiVnc1
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract medial partipsiSolM-0.5
Dorsal motor nucleus of vagusipsi10-0.5
Dorsal raphe nucleusipsiDR0
Nucleus raphe alatusipsiRANA3
Pontine raphe nucleusipsiPnR0
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb2
Raphe pallidus nucleusipsiRPa2
Raphe pallidus nucleus rostral partipsiRParo1
Paragigantocellular reticular nucleusipsiPGi-0.5
Lateral hypothalamic areaipsiLH0
A11 dopamine cellsipsiA11-0.5
Submedius thalamic nucleus dorsal partipsiSubD-0.5
Primary somatosensory cortexipsiS10.5
Primary somatosensory cortex rostral most partipsiS1rm-0.5
Dorsal root ganglion C2ipsiDRGC21
Dorsal root ganglion C3ipsiDRGC31
Dorsal root ganglion C4ipsiDRGC41
Dorsal root ganglion C5ipsiDRGC51
Inferior alveolar nervecontraialv1
Infraorbital nervecontraiobn-0.5
Auriculotemporal nervecontra5V3Aute0
Lingual nervecontra5V3Li0
Mylohyoid nervecontramyhy0
Auricolotemporal nervecontraautemp0
Infraorbital nerveipsiiobn-0.5
Mandibulary nerveipsi5V3-0.5
Lingual nerveipsi5V3Li2
Auriculotemporal nerveipsi5V3Aute0
Myelinated axons of mechanoreceptors of the skinipsimams-0.5
Mylohyoid nerveipsimyhy0
Inferior alveolar nerveipsiialv4
Vibrissa nerveipsivibn-0.5
Supraorbital nerveipsisuon3
Auricolotemporal nerveipsiautemp0
1st molaripsiOrg1mol1
Anterior portion of the tongueipsiOrgOCAT-0.5
CorneacontraOrgsCorn3
Vibrissal follicle complex A1contraVFCA1-0.5
Vibrissal follicle complex A2contraVFCA20
Vibrissal follicle complex A3contraVFCA30
Vibrissal follicle complex A4contraVFCA4-0.5
Vibrissal follicle complex B1contraVFCB10
Vibrissal follicle complex B2contraVFCB20
Vibrissal follicle complex B3contraVFCB30
Vibrissal follicle complex B4contraVFCB40
Vibrissal follicle complex C1contraVFCC10
Vibrissal follicle complex C2contraVFCC20
Vibrissal follicle complex C3contraVFCC30
Vibrissal follicle complex C4contraVFCC40
Vibrissal follicle complex C5contraVFCC50
Vibrissal follicle complex D1contraVFCD10
Vibrissal follicle complex D2contraVFCD20
Vibrissal follicle complex D3contraVFCD30
Vibrissal follicle complex D4contraVFCD40
Vibrissal follicle complex D5contraVFCD50
Vibrissal follicle complex D6contraVFCD60
Vibrissal follicle complex E1contraVFCE1-0.5
Vibrissal follicle complex E2contraVFCE20
Vibrissal follicle complex E3contraVFCE30
Vibrissal follicle complex E4contraVFCE40
Vibrissal follicle complex E5contraVFCE50
Vibrissal follicle complex E6contraVFCE60
Vibrissal follicle complex E7contraVFCE70
Postero orbital sinus haircontraposh2
Jaw muscle spindlescontraMuscJawS1
CorneaipsiOrgsCorn-0.5
Fascial vibrissal follicle complexesipsiFVFC-0.5
Vibrissal follicle complex quadrant between a1 a2 b1 b2ipsiVFCQa1a2b1b21.5
Vibrissal follicle complex A1ipsiVFCA13
Vibrissal follicle complex A2ipsiVFCA23
Vibrissal follicle complex A3ipsiVFCA33
Vibrissal follicle complex A4ipsiVFCA43
Vibrissal follicle complex B1ipsiVFCB13
Vibrissal follicle complex B2ipsiVFCB23
Vibrissal follicle complex B3ipsiVFCB33
Vibrissal follicle complex B4ipsiVFCB43
Vibrissal follicle complex C1ipsiVFCC13
Vibrissal follicle complex C2ipsiVFCC23
Vibrissal follicle complex C3ipsiVFCC33
Vibrissal follicle complex C4ipsiVFCC43
Vibrissal follicle complex C5ipsiVFCC53
Vibrissal follicle complex D1ipsiVFCD13
Vibrissal follicle complex D2ipsiVFCD23
Vibrissal follicle complex D3ipsiVFCD33
Vibrissal follicle complex D4ipsiVFCD43
Vibrissal follicle complex D5ipsiVFCD53
Vibrissal follicle complex D6ipsiVFCD63
Vibrissal follicle complex E1ipsiVFCE13
Vibrissal follicle complex E2ipsiVFCE23
Vibrissal follicle complex E3ipsiVFCE33
Vibrissal follicle complex E4ipsiVFCE43
Vibrissal follicle complex E5ipsiVFCE53
Vibrissal follicle complex E6ipsiVFCE63
Vibrissal follicle complex E7ipsiVFCE73
Mandibular auriculotemporal vibrissaipsiFVFCmat-0.5
Auriculotemporal vibrissaipsiFVFCaut-0.5
Upper lipipsiOrgUL-0.5
Postero orbital sinus hairipsiposh2
Jaw muscle spindlesipsiMuscJawS1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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