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Rat connectome



Mesencephalic trigeminal nucleus caudal pole left


Abbreviation
Me5cp
Color       
Superior regionsMesencephalic trigeminal nucleus caudal part

SynonymsAbbr.Language
Mesencephalic trigeminal nucleus caudal poleMe5cpEng
Caudal part of trigeminal nucleus Eng
Caudal portion part of the nucleus of the mesencephalic tract of the trigeminal nerve Eng
Caudal Me5 Eng
Caudal part of the mesencephalic trigeminal nucleus Eng

Output to

NameSideAbbr.WeightDetails
Nucleus of DarkschewitschipsiDk-0.5
Oculomotor nucleusipsi3-2
Ventral portion of the oculomotor nucleusipsi3Ve-0.5
Dorsomedial portion of the oculomotor nucleusipsi3dm1
Dorsolateral portion of the oculomotor nucleusipsi3dL1
Superior colliculusipsiSC2
Median substantia nigra A9ipsiSNMe-0.5
Interstitial nucleus of CajalipsiInC-0.5
CX-zoneipsiCXZO0.5
X-zoneipsiXZO0.5
Cerebellar lobule 2a zone AipsiCERL2aA0.5
Cerebellar lobule 2a zone BipsiCERL2aB0.5
Cerebellar lobule 2a zone XipsiCERL2aX0.5
Cerebellar lobule 2a zone C1ipsiCERL2aC10.5
Cerebellar lobule 2a zone C2ipsiCERL2aC20.5
Cerebellar lobule 2a zone C3ipsiCERL2aC30.5
Cerebellar lobule 2b zone AipsiCERL2bA0.5
Cerebellar lobule 2b zone BipsiCERL2bB0.5
Cerebellar lobule 2b zone XipsiCERL2bX0.5
Cerebellar lobule 2b zone C1ipsiCERL2bC10.5
Cerebellar lobule 2b zone C2ipsiCERL2bC20.5
Cerebellar lobule 2b zone C3ipsiCERL2bC30.5
Cerebellar lobule 3a zone AipsiCERL3aA0.5
Cerebellar lobule 3a zone BipsiCERL3aB0.5
Cerebellar lobule 3a zone XipsiCERL3aX0.5
Cerebellar lobule 3a zone C1ipsiCERL3aC10.5
Cerebellar lobule 3a zone C2ipsiCERL3aC20.5
Cerebellar lobule 3a zone C3ipsiCERL3aC30.5
Cerebellar lobule 3b zone AipsiCERL3bA0.5
Cerebellar lobule 3b zone BipsiCERL3bB0.5
Cerebellar lobule 3b zone XipsiCERL3bX0.5
Cerebellar lobule 3b zone C1ipsiCERL3bC10.5
Cerebellar lobule 3b zone C2ipsiCERL3bC20.5
Cerebellar lobule 3b zone C3ipsiCERL3bC30.5
Cerebellar lobule 1 zone AipsiCERL1A0.5
Cerebellar lobule 1 zone BipsiCERL1B0.5
Cerebellar lobule 1 zone C1ipsiCERL1C10.5
Cerebellar lobule 1 zone C2ipsiCERL1C20.5
Cerebellar lobule 1 zone C3ipsiCERL1C30.5
Cerebellar lobule 1 zone XipsiCERL1X0.5
Cerebellar lobule 4ipsiCERL40.5
Cerebellar lobule 4 zone AipsiCERL4A0.5
Cerebellar lobule 4 zone BipsiCERL4B0.5
Cerebellar lobule 4 zone XipsiCERL4X0.5
Cerebellar lobule 4 zone C1ipsiCERL4C10.5
Cerebellar lobule 4 zone C2ipsiCERL4C20.5
Cerebellar lobule 4 zone C3ipsiCERL4C30.5
Cerebellar lobule 5ipsiCERL50.5
Cerebellar lobule 5 zone AipsiCERL5A0.5
Cerebellar lobule 5 zone BipsiCERL5B0.5
Cerebellar lobule 5 zone XipsiCERL5X0.5
Cerebellar lobule 5 zone C1ipsiCERL5C10.5
Cerebellar lobule 5 zone C2ipsiCERL5C20.5
Cerebellar lobule 5 zone C3ipsiCERL5C30.5
Cerebellar lobule 8 zone XipsiCERL8X0.5
Cerebellar lobule 9ipsiCERL90.5
Cerebellar lobule 9a zone AipsiCERL9aA1
Cerebellar lobule 9a zone D0ipsiCERL9aD01
Cerebellar lobule 9a zone D1ipsiCERL9aD11
Cerebellar lobule 9a zone D2ipsiCERL9aD21
Cerebellar lobule 9a zone XipsiCERL9aX1
Cerebellar lobule 9b zone AipsiCERL9bA1
Cerebellar lobule 9b zone D0ipsiCERL9bD01
Cerebellar lobule 9b zone D1ipsiCERL9bD11
Cerebellar lobule 9b zone D2ipsiCERL9bD21
Cerebellar lobule 9b zone XipsiCERL9bX1
Cerebellar lobule 9c zone AipsiCERL9cA1
Cerebellar lobule 9c zone D0ipsiCERL9cD01
Cerebellar lobule 9c zone D1ipsiCERL9cD11
Cerebellar lobule 9c zone D2ipsiCERL9cD21
Cerebellar lobule 9c zone XipsiCERL9cX1
Cerebellar lobule 10b zone AipsiCERL10bA0.5
Cerebellar lobule 10b zone D0ipsiCERL10bD00.5
Cerebellar lobule 10b zone D1ipsiCERL10bD10.5
Cerebellar lobule 10b zone D2ipsiCERL10bD20.5
Cerebellar lobule 10b zone XipsiCERL10bX0.5
Cerebellar lobule 10a zone AipsiCERL10aA0.5
Cerebellar lobule 10a zone D0ipsiCERL10aD00.5
Cerebellar lobule 10a zone D1ipsiCERL10aD10.5
Cerebellar lobule 10a zone D2ipsiCERL10aD20.5
Cerebellar lobule 10a zone XipsiCERL10aX0.5
Cerebellar lobule 6a zone AipsiCERL6aA3
Cerebellar lobule 6a zone BipsiCERL6aB3
Cerebellar lobule 6a zone XipsiCERL6aX3
Cerebellar lobule 6a zone C1ipsiCERL6aC13
Cerebellar lobule 6a zone C2ipsiCERL6aC23
Cerebellar lobule 6a zone C3ipsiCERL6aC33
Cerebellar lobule 6b zone AipsiCERL6bA3
Cerebellar lobule 6b zone BipsiCERL6bB3
Cerebellar lobule 6b zone C1ipsiCERL6bC13
Cerebellar lobule 6b zone C2ipsiCERL6bC23
Cerebellar lobule 6b zone C3ipsiCERL6bC33
Cerebellar lobule 6b zone XipsiCERL6bX3
Cerebellar lobule 6c zone AipsiCERL6cA3
Cerebellar lobule 6c zone BipsiCERL6cB3
Cerebellar lobule 6c zone C1ipsiCERL6cC13
Cerebellar lobule 6c zone C2ipsiCERL6cC23
Cerebellar lobule 6c zone C3ipsiCERL6cC33
Cerebellar lobule 6c zone XipsiCERL6cX3
Cerebellar lobule 6d zone AipsiCERL6dA3
Cerebellar lobule 6d zone BipsiCERL6dB3
Cerebellar lobule 6d zone XipsiCERL6dX3
Locus coeruleusipsiLC-0.5
Probst bundleipsiprb-0.5
Reticular systemipsiRF-0.5
Intermediate reticular nucleusipsiIRt1
Parabrachial nucleus medialipsiPBnMe-2
Lateral reticular nucleus dorsolateral partipsiLRtDL-2
Parvicellular reticular nucleusipsiPCRt3
Dorsolateral parvicellular reticular nucleusipsiPCRtDL-0.5
Parvicellular reticular nucleus alpha partipsiPCRtA-2
Subcoeruleus nucleusipsiSubC-0.5
Ambiguus nucleusipsiAmb3
Ambiguus nucleus external formationipsiAmbEx-0.5
Facial nucleusipsi7-0.5
Hypoglossal nucleusipsi12S1
Intertrigeminal nucleusipsiI53
Supratrigeminal nucleusipsiSu53
Area around the motor nucleus of the trigeminal nerveipsi5aa-0.5
Motor trigeminal nucleusipsiMo54
Motor root of the trigeminal nerveipsim5-0.5
Motor trigeminal nucleus dorsolateral partipsiMo5DL3
Dorsal subdivision of the motor trigeminal nucleusipsiMo5D3
Motor trigeminal nucleus jaw closing componentipsiMo5jcc4
Principal sensory trigeminal nucleus dorsomedial partipsiPr5DM3
Spinal trigeminal nucleus interpolar partipsiSp5I-0.5
Spinal trigeminal nucleus interpolar part dorsomedial partipsiSp5IDM-0.5
Spinal trigeminal nucleus oral partipsiSp5O-0.5
Dorsomedial portion of the spinal trigeminal nucleus oral partipsiSp5ODM3
Peritrigeminal zoneipsiP53
Trochlear nucleusipsi4-0.5
Medial vestibular nucleusipsiMVe0.5
Inferior vestibular nucleusipsiIVN0.5
Dorsal medulla oblongataipsiDMe-0.5
Inferior oliveipsiIO-0.5
Dorsolateral brainstemipsiMYCdL-2
Superior colliculuscontraSC2
Median substantia nigra A9contraSNMe0
Motor trigeminal nucleus jaw closing componentcontraMo5jcc2
Ventrolateral thalamic nucleuscontraVL3
Inferior alveolar nerveipsiialv0.5
Masseteric nerveipsimass3
Periodontal ligamentsipsiOrgPeriLig-0.5
Muscle spindles of the masseter muscleipsiMuscMassSpi-0.5

Input from

NameSideAbbr.WeightDetails
Locus coeruleusipsiLC-2
Pontine reticular nucleusipsiPRN1
Parabrachial nucleus medialipsiPBnMe-2
Gigantocellular reticular nucleusipsiGi1
Parvicellular reticular nucleusipsiPCRt-0.5
Principal sensory trigeminal nucleusipsiPr51
Spinal trigeminal nucleus oral partipsiSp5O1
Spinomedullary junctionipsiSMJ2
Substantia innominataipsiSI-0.5
Preoptic regionipsiPREO-0.5
Lateral zoneipsiLHA-0.5
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area perifornical partipsiPFx1
Posterior tuberal lateral hypothalamusipsiPTuLH-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Arcuate nucleusipsiArc-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Bed nucleus of the stria terminalisipsiBST-0.5
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus lateral divisionipsiCeL1
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM1
Medial amygdaloid nucleusipsiMe1
ClaustrumipsiCl-0.5
Ventral pallidumipsiVP-0.5
Accumbens nucleus shellipsiAcbSh-0.5
Anterior cingulate cortexipsiACC2
Anterior cingulate cortex layer 5ipsiACCL52
Prelimbic cortexipsiPrL3
Prelimbic cortex rostral partipsiPrLr2
Prelimbic cortex rostral part layer 5ipsiPrLrL52
Infralimbic cortexipsiIL3
Infralimbic cortex layer 5ipsiILL52
Insular cortexipsiICX3
Agranular insular cortexipsiAI2
Agranular insular cortex layer 5ipsiAIL52
Rostromedial part of the lateral agranular insular cortex lateral partipsiAiLarm0.5
Dysgranular insular cortexipsiDI3
Dysgranular insular cortex layer 5ipsiDIL53
Granular insular cortexipsiGI1
Granular insular cortex layer 5ipsiGIL51
Insular cortex caudal partipsiICXca4
Insular cortex layer 5ipsiICXL52
Insular cortex layer 6ipsiICXL61
Insular cortex rostral partipsiICXR4
Dorsal peduncular cortexipsiDP4
Dorsal peduncular cortex layer 5ipsiDPL52
Dorsal peduncular cortex layer 6ipsiDPL61
Prefrontal cortex layer 5ipsiPFCL53
Rostromedial border of the lateral agranular prefrontal cortexipsiAGlrm0.5
Medial agranular prefrontal cortexipsiAGm3
Medial agranular prefrontal cortex layer 5ipsiAGmL54
Medial agranular prefrontal cortex rostral partipsirAGm2
Medial agranular prefrontal cortex rostralmost partipsirmAGm2
Primary somatosensory cortexipsiS10
Secondary somatosensory cortexipsiS20
Substantia innominatacontraSI1
Preoptic regioncontraPREO-0.5
Lateral zonecontraLHA-0.5
Arcuate nucleuscontraArc-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Amygdaloid complexcontraAC0
ClaustrumcontraCl-0.5
Anterior cingulate cortexcontraACC1
Anterior cingulate cortex layer 5contraACCL51
Prelimbic cortexcontraPrL1.5
Prelimbic cortex rostral partcontraPrLr1
Prelimbic cortex rostral part layer 5contraPrLrL51
Infralimbic cortexcontraIL1.5
Infralimbic cortex layer 5contraILL51
Insular cortexcontraICX1.5
Agranular insular cortexcontraAI1
Agranular insular cortex layer 5contraAIL51
Rostromedial part of the lateral agranular insular cortex lateral partcontraAiLarm0.5
Dysgranular insular cortexcontraDI1
Dysgranular insular cortex layer 5contraDIL51.5
Granular insular cortexcontraGI0.5
Granular insular cortex layer 5contraGIL50.5
Insular cortex caudal partcontraICXca1
Insular cortex layer 5contraICXL51
Insular cortex layer 6contraICXL60.5
Insular cortex rostral partcontraICXR0.5
Dorsal peduncular cortexcontraDP1.5
Dorsal peduncular cortex layer 5contraDPL51
Dorsal peduncular cortex layer 6contraDPL60.5
Prefrontal cortex layer 5contraPFCL51.5
Rostromedial border of the lateral agranular prefrontal cortexcontraAGlrm0.5
Medial agranular prefrontal cortexcontraAGm1
Medial agranular prefrontal cortex layer 5contraAGmL52
Medial agranular prefrontal cortex rostral partcontrarAGm1
Medial agranular prefrontal cortex rostralmost partcontrarmAGm1.5
Primary somatosensory cortexcontraS10
Secondary somatosensory cortexcontraS20
Anterior ethmoidal nerveipsiaemn-0.5
Inferior alveolar nerveipsiialv-2
Mandibulary nerveipsi5V3-0.5
Masseteric nerveipsimass3
Masseteric nervecontramass0
Jaw muscle spindlesipsiMuscJawS-0.5
Muscle spindles of the masseter muscleipsiMuscMassSpi-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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