University of Rostock

Department of Anatomy

Neuroscience Group

 Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Lateral hypothalamic area perifornical part left


Abbreviation
PFx
Color       
Superior regionsLateral hypothalamic area

SynonymsAbbr.Language
Lateral hypothalamic area perifornical partPFx 
Area perifornicalisPF 
Perifornical hypothalamic area [Posterior region]  
Lateral hypothalamic area perifornical partPFx 
Lateral hypothalamic area perifornical part [Lateral hypothalamic area [Region of tuber cinereum]]  
Perifornical region  
Perifornical hypothalamic nucleus  
Perifornical nucleusPForEng
Perifornical hypothalamic areaLHApfEng
Lateral hypothalamic area perifornical zone Eng
Nucleus perifornicalisLHpfLat
Perifornical nucleus  
Perifornical part of the lateral hypothalamusPeFLH 
Perifornical lateral hypothalamic areaPeFLHEng

SubregionsSide
Lateral hypothalamic area perifornical part dorsal aspectleft
Lateral hypothalamic area perifornical part rostral partleft
Anterior perifornical regionleft
Lateral hypothalamic area perifornical part dorsolateral to the fornixleft
More caudal lateral hypothalamic area perifornical partleft
Lateral part of the lateral hypothalamic area perifornical partleft
Medial part of the lateral hypothalamic area perifornical partleft
Dorsomedial perifornical lateral hypothalamic arealeft
Ventromedial perifornical lateral hypothalamic arealeft
Ventral perifornical lateral hypothalamusleft
Lateral hypothalamic area perifornical part rostrodorsal partleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG3
Nuclei of the lateral lemniscusipsiNLL0.5
Nucleus of DarkschewitschipsiDk2
Oculomotor nucleusipsi33
Parabigeminal nucleusipsiPBG1
Periaqueductal grayipsiPAG2
Dorsolateral periaqueductal grayipsiDLPAG0
Lateral periaqueductal grayipsiLPAG3
Ventral periaqueductal grayipsiVPAG3
Ventrolateral periaqueductal grayipsiVLPAG2
Red nucleusipsiR1
Inferior colliculusipsiICOL1
Brachium of the inferior colliculusipsibic1
Central nucleus of the inferior colliculusipsiCIC2
External cortex of the inferior colliculusipsiECIC3
Dorsal cortex of the inferior colliculusipsiDCIC2
Superior colliculusipsiSC1
Anterior tegmental nucleusipsiATg1
Central tegmental fieldipsiTGAC2
Peduncularpontine nucleusipsiPPN3
Dorsal peduncular pontine nucleusipsiDPPn1
Ventral peduncular pontine nucleusipsiVPPn3
Substantia nigra A9ipsiSN1
Substantia nigra compact partipsiSNC3
Substantia nigra lateral partipsiSNL3
Substantia nigra reticular partipsiSNR1
Ventral tegmental area A10ipsiVTA3
Interfascicular nucleusipsiIF3
Parabrachial pigmented nucleusipsiPBP2
Paranigral nucleusipsiPN3
Peripeduncular nucleusipsiPP2
Laterodorsal tegmental nucleusipsiLDTg3
Ventral tegmental nucleusipsiVTg1
Dorsal tegmental nucleusipsiDTg3
Dorsal tegmental nucleus central partipsiDTgC2
Pedunculopontine tegmental nucleusipsiPPTg2
Interstitial nucleus of CajalipsiInC1
CerebellumipsiCERE3
Cerebellar cortexipsiCERC0.5
Deep cerebellar nucleiipsiDNC1
Medial cerebellar nucleusipsiMed1
FlocculusipsiFl2
Middle cerebellar peduncleipsimcp-2
Superior cerebellar peduncleipsisucep-2
A5 noradrenaline cellsipsiA52
Barringtons nucleusipsiBar3
Locus coeruleusipsiLC4
Locus coeruleus caudal partipsiLCca1
Locus coeruleus rostral partipsiLCRo1.5
Medial dendritic zone of the locus coeruleusipsiLCmd-0.5
Pontine grayipsiPG1
Reticulotegmental nucleusipsiRETn1
Pontine nucleiipsiPn0
Prepositus nucleusipsiPr3
Caudoventrolateral reticular nucleusipsiCVLR-0.5
Intermediate reticular nucleusipsiIRt3
Paramedian reticular nucleusipsiPMn2
Mesencephalic reticular formationipsiMRF2
Deep mesencephalic nucleusipsiDpMe1
Pontine reticular nucleusipsiPRN1
Pontine reticular nucleus oral partipsiPnO1
Cuneiforme nucleusipsiCnF2
Parabrachial nucleusipsiPB2
Koelliker Fuse nucleusipsiKF3
Lateral parabrachial nucleusipsiLPB3
Parabrachial nucleus medialipsiPBnMe3
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA3
Gigantocellular reticular nucleus ventral partipsiGiV4
Lateral reticular nucleusipsiLRt2
Medullary reticular nucleusipsiMdD1
Medullary reticular nucleus dorsal partipsiMdDd4
Medullary reticular nucleus ventral partipsiMdV2
Parvicellular reticular nucleusipsiPCRt3
Trapezoid bodyipsitz1
Nucleus of the trapezoid bodyipsiTz1
Ambiguus nucleusipsiAmb1
Ambiguus nucleus caudal partipsiAmbc-0.5
Area postremaipsiAP3
Area postrema dorsolateral partipsiAPdL-0.5
Abducens nucleusipsi61
Facial nucleusipsi72
Hypoglossal nucleusipsi12S1
Mesencephalic trigeminal nucleusipsiMe52
Mesencephalic trigeminal nucleus mesencephalic pontine junctionipsiMe5mpj2
Mesencephalic trigeminal nucleus midbrain portionipsiMe5mp3
Mesencephalic trigeminal nucleus rostral ponsipsiMe5rp1
Mesencephalic trigeminal nucleus caudal poleipsiMe5cp1
Motor trigeminal nucleusipsiMo52
Principal sensory trigeminal nucleusipsiPr52
Spinal trigeminal nucleusipsiSp5nc3
Spinal trigeminal nucleus caudal partipsiSp5C1
Spinal trigeminal nucleus oral partipsiSp5O2
Gelatinous layer of the caudal spinal trigeminal nucleusipsiGe53
Trochlear nucleusipsi41
Cochlear systemipsiCOS1
Dorsal cochlear nucleusipsiDC4
Ventral cochlear nucleusipsiVC2
Vestibular systemipsiVES1
Vestibular nucleiipsiVnc1
Superior vestibular nucleusipsiSuVe-0.5
Lateral vestibular nucleusipsiLVe1
Nucleus of the solitary tractipsiSol3
Nucleus of the solitary tract caudal partipsiSolca3
Lateral part of caudal solitary tract nucleusipsiSolcaL-0.5
Nucleus of the solitary tract intermediate part parvicellular subdivisionipsiSoliMp3
Nucleus of the solitary tract lateral partipsiSolL1
Nucleus of the solitary tract medial partipsiSolM3
Nucleus of the solitary tract ventrolateral partipsiSolVL1
Medio-caudal nucleus of the solitary tractipsiSolmc-0.5
Dorsal motor nucleus of vagusipsi104
Raphe nucleiipsiRAN2
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal partipsiDRC0
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm2
Dorsal raphe nucleus dorsomedian partipsiDRdmm2
Dorsal raphe nucleus interfascicular partipsiDRI3
Dorsal raphe nucleus intermediate partipsiDRim2
Dorsal raphe nucleus lateral wingipsiDRlw3
Dorsal raphe nucleus median partipsiDRM1.5
Dorsal raphe nucleus caudal midlineipsiDRcmip2
Dorsal raphe nucleus rostral partipsiDRr0
Dorsal raphe nucleus ventromedial subdivisionipsiDRvme2
Linear nucleus of the rapheipsiLIR2
Rostral linear nucleus of the rapheipsiRLi3
Median raphe nucleusipsiMnR4
Pontine raphe nucleusipsiPnR2
Raphe magnus nucleusipsiRMg4
Raphe obscurus nucleusipsiROb2
Raphe pallidus nucleusipsiRPa2
B9 serotonin cellsipsiB93
Ventral lateral medulla oblongataipsiMVL1
Caudal ventrolateral medullaipsiCVLM2
Caudal ventrolateral medulla lateral partipsiCVLMl1
Rostral ventrolateral medullaipsiRVLM3
Rostral ventrolateral medulla sympathetic premotor neuronsipsiRVLMspn-0.5
Gracile nucleus dorsal partipsiGraD1
Nucleus of RolleripsiRo1
Olivary nucleusipsiON1
Superior oliveipsiSuOLi1
Paragigantocellular reticular nucleusipsiPGi2
Dorsal paragigantocellular nucleusipsiDPGi2
Lateral paragigantocellular nucleusipsiLPGi3
Retrotrapezoid nucleusipsiRTN3
Median eminenceipsiME3
Endopiriform systemipsiEnN2
Dorsal endopiriform nucleusipsiDEn2
Islands of CallejaipsiICj1
Diagonal band of BrocaipsiDBB1
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Medial septal nucleusipsiMS2
Substantia innominataipsiSI2
Substantia innominata dorsal partipsiSID-0.5
Lateral preoptic areaipsiLPO3
Medial preoptic areaipsiMPA3
Lateral preoptic nucleusipsiLPN3
Magnocellular preoptic nucleusipsiMCPO3
Medial preoptic nucleusipsiMPO3
Median preoptic nucleusipsiMnPO2
Posterodorsal preoptic nucleusipsiPDP2
Tenia tectaipsiTT2
Tuberomammillary nucleusipsiTuM4
Ventral tuberomammillary nucleusipsiVTM2
Subcommissural organipsiSCO1
Dorsomedial hypothalamic nucleusipsiDMHy0
Lateral hypothalamic areaipsiLH3
Tuberal region of lateral hypothalamusipsiTuLH2
Lateroanterior hypothalamic nucleusipsiLAH3
Posterolateral hypothalamusipsiPLHY3
Supraoptic nucleus [Lateral zone]ipsiSOLZ2
Anterior hypothalamic areaipsiAHA1
Anterior hypothalamic area anterior partipsiAHAA2
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe2
Anterior hypothalamic nucleusipsiAHn3
Dorsal hypothalamic areaipsiDA1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsal partipsiDMD3
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Parastriatal nucleusipsiPS2
Posterior hypothalamic areaipsiPHA3
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus anterior partipsiVMHA2
Ventromedial hypothalamic nucleus posterior partipsiVMHP4
Arcuate nucleusipsiArc4
Arcuate nucleus lateral partipsiArcL1
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR2
Paraventricular hypothalamic nucleus magnocellular part [Periventricular zone anterior region]ipsiPaAM1
Paraventricular hypothalamic nucleus parvicellular part [Periventricular zone anterior region]ipsiPaPc3
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP3
Paraventricular hypothalamic nucleus medial parvocellular partipsiMPPa3
Paraventricular hypothalamic nucleusipsiPa2
Periventricular hypothalamic nucleusipsiPe1
Posterior periventricular nucleusipsiPeP2
Preoptic periventricular nucleusipsiPePO3
Suprachiasmatic nucleusipsiSCh2
Supraoptic nucleus [Supraoptic region]ipsiSO3
Mammillary bodyipsiCMAM0
Lateral mammillary nucleusipsiLM4
Medial mammillary nucleusipsiMMn0.5
Medial mammillary nucleus lateral partipsiML0
Medial mammillary nucleus medial partipsiMM2
Medial mammillary nucleus median partipsiMMnm1
Premammillary nucleus dorsal partipsiPMD2
Premammillary nucleus ventral partipsiPMV1
Submammillothalamic nucleusipsiSMT4
Supramammillar nucleusipsiSuM3
Perifornical nucleusipsiPeF2
Retrochiasmatic areaipsiRCh2
Subincertal nucleusipsiSubI4
Anterodorsal thalamic nucleusipsiAD1
Anteromedial thalamic nucleusipsiAM2
Anteroventral thalamic nucleusipsiAV1
Interoanterodorsal thalamic nucleusipsiIAD0
Interoanteromedial thalamic nucleusipsiIAM3
Central medial thalamic nucleusipsiCM3
Central medial thalamic nucleus anterior partipsiCMA1
Central medial thalamic nucleus posterior partipsiCMP3
Centrolateral thalamic nucleusipsiCL2
Gelatinosus thalamic nucleusipsiG1
Paracentral thalamic nucleusipsiPC1
Parafascicular thalamic nucleusipsiPF1
Rhomboid thalamic nucleusipsiRh1
Posterior thalamic nuclear groupipsiPo2
Medial group of the dorsal thalamusipsiMED4
Mediodorsal thalamic nucleusipsiMD4
Intermediodorsal thalamic nucleusipsiIMD4
Mediodorsal thalamic nucleus central partipsiMDC1
Mediodorsal thalamic nucleus lateral partipsiMDL1
Mediodorsal thalamic nucleus medial partipsiMDM1
Submedius thalamic nucleusipsiSub0
Paratenial thalamic nucleusipsiPT1
Paraventricular thalamic nucleusipsiPV4
Paraventricular thalamic nucleus anterior partipsiPVA3
Paraventricular thalamic nucleus middle divisionipsiPVMiD-0.5
Paraventricular thalamic nucleus posterior partipsiPVP4
Reuniens thalamic nucleusipsiRe3
Subfornical organipsiSFO2
Ventrolateral thalamic nucleusipsiVL1
Ventral posterolateral thalamic nucleusipsiVPL0
Ventral posteromedial thalamic nucleusipsiVPM0
Ventromedial thalamic nucleusipsiVM0
Intralaminar nucleiipsiILN3
Lateral posterior thalamic nucleusipsiLP2
Laterodorsal thalamic nucleusipsiLD1
Reticular thalamic nucleusipsiRt1
Subparafascicular thalamic nucleusipsiSPF4
Zona incertaipsiZI3
Nucleus of the fields of ForelipsiF1
Zona incerta dorsal partipsiZID4
Zona incerta ventral partipsiZIV2
Tuber cinereum areaipsiTC4
Nucleus of the optic tractipsiOT0.5
Lateral habenular nucleusipsiLHb1
Medial habenular nucleusipsiMHb0.5
Anterior pretectal nucleusipsiAPT4
Medial pretectal nucleusipsiMPT1
Posterior pretectal nucleusipsiPPT1
Pineal glandipsiPi0
Anterior lobe of pituitaryipsiAPit1
Intermediate lobe of pituitaryipsiIPit2
Posterior lobe of pituitaryipsiPPit3
Lateral lemniscusipsill3
Stria medullaris of the thalamusipsism2
Amygdaloid complexipsiAC2
Basal dorsal nucleusipsiBnD0.5
Basal nucleus ventral divisonipsiBncV0.5
Basolateral amygdaloid nucleusipsiBL2
Anterior basolateral nucleusipsiBLA2
Posterior basolateral nucleusipsiBLP2
Ventral basolateral nucleusipsiBLV2
Basomedial amygdaloid nucleusipsiBM1
Anterior basomedial nucleusipsiBMA2
Posterior basomedial nucleusipsiBMP2
Lateral amygdaloid nucleusipsiLA1
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM3
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA3
Bed nucleus of the stria terminalis lateral divisionipsiBSTL3
Bed nucleus of the stria terminalis lateral division dorsal partipsiBSTLD2
Bed nucleus of the stria terminalis lateral division intermediate partipsiBSTLI2
Bed nucleus of the stria terminalis lateral division juxtacapsular partipsiBSTLJ1
Bed nucleus of the stria terminalis lateral division posterior partipsiBSTLP3
Bed nucleus of the stria terminalis lateral division rostral partipsiBSTrL2
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV1
Bed nucleus of the stria terminalis medial divisionipsiBSTM3
Bed nucleus of the stria terminalis medial division anterior partipsiBSTMA3
Bed nucleus of the stria terminalis medial division posterointermediate partipsiBSTMPI2
Bed nucleus of the stria terminalis medial division posterolateral partipsiBSTMPL2
Bed nucleus of the stria terminalis medial division posteromedial partipsiBSTMPM3
Bed nucleus of the stria terminalis medial division rostral partipsiBSTrm3
Bed nucleus of the stria terminalis medial division ventral partipsiBSTMV3
Bed nucleus of the stria terminalis posterior divisionipsiBSTP2
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd2
Bed nucleus of the stria terminalis posterior division ventral nucleusipsiBSTV3
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus lateral divisionipsiCeL3
Central amygdaloid nucleus lateral division capsular partipsiCeC3
Central amygdaloid nucleus medial divisionipsiCeM3
Central amygdaloid nucleus ventral partipsiCeV2
Anterior amygdaloid areaipsiAA3
Anterior amygdaloid area dorsal partipsiAAD3
Anterior amygdaloid area shell areaipsiAASh3
Anterior amygdaloid area ventral partipsiAAV3
Cortical amygdaloid nucleusipsiCAn2
Anterior cortical amygdaloid nucleusipsiACo2
Posterior amygdaloid nucleusipsiCOAp-0.5
Posterolateral cortical nucleusipsiPLCo2
Nucleus of the lateral olfactory tractipsiLOT2
Periamygdaloid complexipsiPAC2
Medial amygdaloid nucleusipsiMe2
Medial amygdaloid nucleus anterodorsal partipsiMeAD3
Medial amygdaloid nucleus posterior partipsiMePo-0.5
Medial amygdaloid nucleus posterodorsal partipsiMePD3
Medial amygdaloid nucleus posteroventral partipsiMePV3
Amygdalohippocampal areaipsiAHi2
Posteromedial cortical nucleusipsiPMCo2
Amygdalostriatal transition areaipsiAStr2
Intercalated amygdaloid nucleus main partipsiIcaM1
Intercalated nuclei of the amygdalaipsiI2
ClaustrumipsiCl3
Globus pallidusipsiGP1
Lateral globus pallidusipsiLGP1
Medial globus pallidusipsiMGP3
Ventral pallidumipsiVP1
Accumbens nucleusipsiAc1
Accumbens nucleus coreipsiAcbC1
Accumbens nucleus shellipsiAcbSh2
Caudate putamenipsiCPu1
Fundus of the striatumipsiFS2
Subthalamic nucleusipsiSTh3
Parasubthalamic nucleusipsiPSTh0
Bed nucleus of the anterior commissureipsiBAC3
HippocampusipsiHIPP1
Dorsal hippocampusipsiHIPPd-0.5
Dentate gyrusipsiDG1
Field CA1 of hippocampusipsiCA11
Field CA2 of hippocampusipsiCA21
Field CA3 of hippocampusipsiCA31
SubiculumipsiS1
Septohippocampal nucleusipsiSHi1
Indusium griseumipsiIG3
Entorhinal cortexipsiEnt1
Piriform cortexipsiPir2
Cerebral cortex layer 4ipsiCCL41
Cerebral cortex layer 1ipsiCCL12
Cerebral cortex layer 2ipsiCCL22
Cerebral cortex layer 3ipsiCCL32
Cerebral cortex layer 5ipsiCCL52
Cerebral cortex layer 6ipsiCCL62
Cerebral cortex layer 6bipsiCCL6b3
Cingulate cortexipsiCg3
Prelimbic cortexipsiPrL-0.5
Infralimbic cortexipsiIL-0.5
Frontal association cortexipsiFrA1
Parietal association cortexipsiPtA1
Agranular insular cortexipsiAI1
Agranular insular cortex dorsal part superficial layersipsiAIDsL0.5
Granular insular cortexipsiGI2
Lateral neocortexipsiLCX2
Perirhinal cortexipsiA351
Frontoparietal cortex layersipsiFPC3
Lateral agranular prefrontal cortexipsiAGl1
Medial prefrontal cortexipsimPFC2
Primary somatosensory cortexipsiS11
Visual regionsipsiVR1
Primary visual cortexipsiV13
Anterior medial frontal cortexipsiAMFC0
Orbital cortexipsiOrC1
Lateral orbital cortexipsiLO0.5
Ventrolateral orbital area posterior partipsiVLOp0
Nucleus of the posterior commissureipsiPCom1
Precommissural nucleusipsiPrC1
Geniculate bodyipsiGB0
Dorsal geniculate nucleus lateral partipsiDLGl2
Lateral geniculate complexipsiLG2
Intergeniculate leafipsiIGL2
Ventral lateral geniculate nucleusipsiVLG2
Medial geniculate nucleusipsiMG2
Interpeduncular nucleusipsiIP2
Interpeduncular nucleus apical subnucleusipsiIPA3
Interpeduncular nucleus central subnucleusipsiIPRc1
Interpeduncular nucleus dorsomedial subnucleusipsiIPDM3
Interpeduncular nucleus intermediate subnucleusipsiIPI1
Interpeduncular nucleus lateral subnucleusipsiIPL3
Interpeduncular nucleus rostral subnucleusipsiIPR1
Olfactory bulb A16ipsiMOB2
Olfactory nucleiipsiONn1
Anterior olfactory nucleusipsiAON2
Olfactory tubercleipsiTuO1
Lateral septal nucleusipsiLS3
Lateral septal nucleus caudal partipsiLSc-0.5
Lateral septal nucleus dorsal partipsiLSD3
Lateral septal nucleus intermediate partipsiLSI2
Lateral septal nucleus rostral partipsiLSr2
Lateral septal nucleus rostral part dorsolateral zoneipsiLSrdl3
Lateral septal nucleus ventral partipsiLSV1
Septofimbrial nucleusipsiSFi1
Triangular septal nucleusipsiTS1
Septohypothalamic nucleusipsiSHy2
Stria terminalisipsist0.5
Choroid plexus 3d ventricleipsicpv31
Choroid plexus 4th ventricleipsicpv41
Ependyma and subependymal layeripsiE2
Intermediolateral cell column C1ipsiIMLC1-0.5
Intermediolateral cell column C2ipsiIMLC2-0.5
Intermediolateral cell column C3ipsiIMLC3-0.5
Thoracal segmentsipsiTSeg-0.5
Thoracal segment 1ipsiT1-0.5
Thoracal segment 2ipsiT2-0.5
Thoracal segment 3ipsiT3-0.5
Thoracal segment 4ipsiT4-0.5
Lumbar segment 6ipsiL62
Sacral segment 1ipsiSa12
Dorsolateral periaqueductal graycontraDLPAG0
Lateral periaqueductal graycontraLPAG1
Ventrolateral periaqueductal graycontraVLPAG1
Central nucleus of the inferior colliculuscontraCIC-0.5
Ventral tegmental area A10contraVTA2
CerebellumcontraCERE1
Middle cerebellar pedunclecontramcp-2
Superior cerebellar pedunclecontrasucep-2
A5 noradrenaline cellscontraA52
Locus coeruleuscontraLC0.5
Ambiguus nucleus caudal partcontraAmbc-0.5
Area postremacontraAP-0.5
Area postrema dorsolateral partcontraAPdL-0.5
Nucleus of the solitary tractcontraSol-0.5
Lateral part of caudal solitary tract nucleuscontraSolcaL-0.5
Medio-caudal nucleus of the solitary tractcontraSolmc-0.5
Dorsal motor nucleus of vaguscontra10-0.5
Dorsal raphe nucleus lateral wingcontraDRlw-0.5
Ventral lateral medulla oblongatacontraMVL0.5
Rostral ventrolateral medullacontraRVLM2
Paragigantocellular reticular nucleuscontraPGi-0.5
Lateral paragigantocellular nucleuscontraLPGi0.5
Retrotrapezoid nucleuscontraRTN1
Medial septal nucleuscontraMS0.5
Substantia innominatacontraSI0.5
Medial preoptic areacontraMPA0.5
Paraventricular thalamic nucleuscontraPV3
Lateral habenular nucleuscontraLHb-0.5
HippocampuscontraHIPP-0.5
Intermediolateral cell column C1contraIMLC1-0.5
Intermediolateral cell column C2contraIMLC2-0.5
Intermediolateral cell column C3contraIMLC3-0.5
Stellate ganglionipsiAutoSteG-0.5
Celiac ganglionipsiAutoCel-0.5
Sympathetic nervous systemipsiSNS1
Parasympathetic nervous systemipsiPaNS2
Stellate ganglioncontraAutoSteG-0.5
Celiac ganglioncontraAutoCel-0.5
Ventral stomach wallipsiOrgsStomVWS-0.5
Ventral stomach wallcontraOrgsStomVWS-0.5
Intercapsular brown adipose tissueipsiOrgBATi-10
Adrenal glandipsiADRE-0.5
Bulbospongiosus muscleipsiMuscbsp1
Femoral bone marrowipsiOrgSkFemM2
OvaryipsiOrgOvar1
Epididymis caputipsiOrgEpiCa1
Epididymis caudaipsiOrgEpiCau2
TestisipsiOrgTest2
KidneyipsiOrgsKid-0.5
Adrenal glandcontraADRE-0.5
Bulbospongiosus musclecontraMuscbsp1
OvarycontraOrgOvar-0.5
TestiscontraOrgTest-0.5
KidneycontraOrgsKid-0.5
Pancreas sideipsiOrgsPancs2

Input from

NameSideAbbr.WeightDetails
Lateral periaqueductal grayipsiLPAG4
Ventral periaqueductal grayipsiVPAG3
Ventrolateral periaqueductal grayipsiVLPAG3
Substantia nigra A9ipsiSN2
Ventral tegmental area A10ipsiVTA1.5
Laterodorsal tegmental nucleusipsiLDTg4
Dorsal tegmental nucleusipsiDTg-0.5
Pedunculopontine tegmental nucleusipsiPPTg1
Edinger Westphal nucleusipsiEW1.5
CerebellumipsiCERE3
Superior cerebellar peduncleipsisucep-2
A5 noradrenaline cellsipsiA51
A7 noradrenaline cellsipsiA71
Locus coeruleusipsiLC2
Prelocus coeruleus nucleusipsiPLC3
Pontine sublaterodorsal nucleusipsiPsLdn3
Mesencephalic reticular formationipsiMRF-0.5
Parabrachial nucleusipsiPB-0.5
Lateral parabrachial nucleusipsiLPB4
Lateral parabrachial nucleus external part inner portionipsiLPBEip0.5
Dorsal lateral parabrachial nucleusipsiPBDoL3
C1 adrenaline cellsipsiC13
C1 adrenaline cells rostral partipsiC1ro1
C1 adrenaline cells medial partipsiC1m3
C2 adrenaline cellsipsiC21
C3 adrenaline cellsipsiC31
Nucleus of the solitary tractipsiSol-0.5
Dorsal raphe nucleusipsiDR4
Median raphe nucleusipsiMnR1.5
Raphe magnus nucleus rostral partipsiRMgR3
Rostral ventrolateral medullaipsiRVLM3
A1 noradrenergic cellsipsiA13
A2 noradrenergic cellsipsiA2-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Medial septal nucleusipsiMS3
Substantia innominataipsiSI3
Substantia innominata dorsal partipsiSID1
Lateral preoptic areaipsiLPO2.5
Medial preoptic areaipsiMPA4
Medial preoptic nucleusipsiMPO-0.5
Median preoptic nucleusipsiMnPO3
Median preoptic nucleus caudal levelipsiMnPOC4
Median preoptic nucleus rostral levelipsiMnPOR3
Ventrolateral preoptic nucleusipsiVLPO4
HypothalamusipsiHYPO3
Dorsomedial hypothalamic nucleusipsiDMHy4
Lateral hypothalamic areaipsiLH4
Posterolateral hypothalamusipsiPLHY-0.5
Tuberal nucleusipsiTU2
Anterior hypothalamic areaipsiAHA3
Anterior hypothalamic nucleusipsiAHn-2
Anterior part of the anterior hypothalamic nucleusipsiAHna1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2.5
Parastriatal nucleusipsiPS4
Posterior hypothalamic areaipsiPHA4
Ventromedial hypothalamic nucleusipsiVMH4
Ventromedial hypothalamic nucleus anterior partipsiVMHA1
Ventromedial hypothalamic nucleus central partipsiVMHC2
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM2
Ventromedial hypothalamic nucleus posterior partipsiVMHP-0.5
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL3
Arcuate nucleusipsiArc3
Paraventricular hypothalamic nucleusipsiPa2.5
Preoptic periventricular nucleusipsiPePO3
Suprachiasmatic nucleusipsiSCh1.5
Suprachiasmatic preoptic nucleusipsiPSCh3
Incerto hypothalamic areaipsiicHYPO-0.5
Premammillary nucleus dorsal partipsiPMD-0.5
Premammillary nucleus ventral partipsiPMV-0.5
Paraventricular thalamic nucleusipsiPV1.5
Basolateral amygdaloid nucleusipsiBL2
Bed nucleus of the stria terminalisipsiBST3
Bed nucleus of the stria terminalis anterior dorsal areaipsiBSTAD-0.5
Bed nucleus of the stria terminalis fusiform partipsiFu4
Bed nucleus of the stria terminalis lateral divisionipsiBSTL1.5
Bed nucleus of the stria terminalis lateral division posterior partipsiBSTLP2.5
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV4
Bed nucleus of the stria terminalis medial division anterior partipsiBSTMA4
Bed nucleus of the stria terminalis medial division posterolateral partipsiBSTMPL3
Bed nucleus of the stria terminalis medial division ventral partipsiBSTMV2.5
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus intermediate divisionipsiCeI3
Central amygdaloid nucleus lateral divisionipsiCeL4
Central amygdaloid nucleus lateral division rostral partipsiCeLR3
Central amygdaloid nucleus medial divisionipsiCeM4
Central amygdaloid nucleus rostral partipsiCerp2
Medial extended amygdalaipsiMEXA2.5
ClaustrumipsiCl3
Ventral pallidumipsiVP3
Accumbens nucleus shellipsiAcbSh2
Dorsolateral accumbensipsiAcbDL4
Dentate gyrusipsiDG1.5
SubiculumipsiS4
Anterior cingulate cortexipsiACC1
Prelimbic cortexipsiPrL4
Prelimbic cortex caudal partipsiPrLc3
Prelimbic cortex rostral partipsiPrLr3
Infralimbic cortexipsiIL4
Parietal association cortexipsiPtA1.5
Agranular insular cortexipsiAI2.5
Agranular insular cortex dorsal partipsiAID1
Granular insular cortexipsiGI2.5
Dorsal peduncular cortexipsiDP4
Dorsolateral orbital cortexipsiDLO1
Medial orbital cortexipsiMO3
Ventral lateral geniculate nucleusipsiVLG-3
Interpeduncular nucleusipsiIP1.5
Interpeduncular nucleus rostral subnucleus midrostrocaudal partipsiIPRmrc-0.5
Lateral septal nucleusipsiLS-0.5
Lateral septal nucleus caudal partipsiLSc3
Lateral septal nucleus dorsal partipsiLSD2.5
Lateral septal nucleus intermediate partipsiLSI4
Lateral septal nucleus rostral part dorsolateral zoneipsiLSrdl-0.5
Lateral septal nucleus rostral part medial zoneipsiLSrm-0.5
Ventrally lateral septal nucleus rostral part medial zoneipsiLSrmV1
Lateral septal nucleus ventral partipsiLSV1
CerebellumcontraCERE1
A5 noradrenaline cellscontraA5-0.5
Pontine sublaterodorsal nucleuscontraPsLdn3
Rostral ventrolateral medullacontraRVLM-0.5
Tuberal nucleuscontraTU1
Ventromedial hypothalamic nucleus anterior partcontraVMHA0.5
Ventromedial hypothalamic nucleus central partcontraVMHC0.5
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM1
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL1.5
Paraventricular thalamic nucleuscontraPV0
Dentate gyruscontraDG0
Infralimbic cortexcontraIL0
Parietal association cortexcontraPtA0
Interpeduncular nucleuscontraIP0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications