University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Caudal striatum left


Abbreviation
CPuc
Color       
Superior regionsCaudate putamen

SynonymsAbbr.Language
 Strc 
Striatum caudal regionSTRc 
Striatum like amygdalar nucleisAMY 
Caudate putamen caudal  
Caudal striatumCPucEng
Caudally part of the caudate nucleus Eng
Caudal caudate putamen Eng
Caudal neostriatum Eng

SubregionsSide
Caudal one-fourth of striatumleft
Caudal one-third of the striatumleft
Caudal striatum chemoarchitectonic compartmentsleft
Caudal striatum mediodorsal partleft
Caudal striatum ventrolateral partleft
Caudal striatum ventromedial partleft
Caudal two thirds of the striatumleft
Caudalmost striatumleft
Central caudal striatumleft
Dorsomedial caudate putamen caudal partleft
Medial region of the caudal striatumleft
Rostral part of the caudal striatumleft
Ventral region of the caudal striatumleft
Mediolateral caudal striatumleft
Caudal basal caudate putamenleft
Caudate putamen caudolateral partleft
Caudodorsal striatumleft
Caudolateral part of the caudate putamenleft
Caudomedial striatumleft
Caudoventral striatumleft

Output to

NameSideAbbr.WeightDetails
Central gray mesencephalic partipsiCGM-2
Red nucleus lateral partipsiRedLa1
Substantia nigra A9ipsiSN2
Substantia nigra A9 dorsal partipsiSND1
Substantia nigra compact partipsiSNC1
Substantia nigra compact part dorsal tieripsiSNCD1
Substantia nigra lateral partipsiSNL-2
Substantia nigra medial partipsiSNM1
Substantia nigra reticular partipsiSNR1
Substantia nigra reticular part dorsolateral tieripsiSNRDL3
Substantia nigra reticular part ventrolateral tieripsiSNRVL3
Substantia nigra rostral partipsiSNrp1
Ventral tegmental area A10ipsiVTA3
Peripeduncular nucleusipsiPP-2
Peribrachial regionipsiPBR2
Basal forebrainipsiBAF-0.5
Nucleus of the ansa lenticularisipsiAL3
Lateral hypothalamic areaipsiLH1
A8 dopamine cells retrorubral groupipsiRRF3
Lateral group of the dorsal thalamusipsiLAT1
Ventral thalamusipsiVNT3
Zona incertaipsiZI3
Nucleus of the fields of ForelipsiF1
Optic tractipsiopt1
Pineal glandipsiPi-2
Internal capsuleipsiic1
Cerebral peduncle basal partipsicp1
Lateral portion of the cerebral peduncleipsiLpcp3
Medial lemniscusipsiml3
Caudal globus pallidusipsiGPc-0.5
Medial globus pallidusipsiMGP1
Medial globus pallidus caudal partipsiMGPc-0.5
Subthalamic nucleusipsiSTh3
Primary visual cortexipsiV1-0.5

Input from

NameSideAbbr.WeightDetails
Substantia nigra A9ipsiSN3
Substantia nigra compact partipsiSNC3
Substantia nigra compact part lateral tieripsiSNCL1
Medial third of the substantia nigra compact partipsiSNCMt-0.5
Substantia nigra compact part mediolateral tieripsiSNCML-0.5
Substantia nigra compact part middle partipsiSNCmi1
Substantia nigra lateral partipsiSNL2
Mid-dorsal sheet of the middle lateral substantia nigraipsiSNmidL-0.5
Substantia nigra medial partipsiSNM-0.5
Substantia nigra reticular partipsiSNR1
Substantia nigra reticular part caudal tieripsiSNRca2
Substantia nigra reticular part lateral tieripsiSNRL-0.5
Substantia nigra intermediate partipsiSNim-0.5
Ventral tegmental area A10ipsiVTA3
Ventral tegmental area A10 caudal partipsiVTAcp-0.5
Ventral tegmental area A10 dorsal partipsiVTAd-0.5
Ventral tegmental area A10 dorsolateral partipsiVTAdL1
Ventral tegmental area rostral partipsiVTAR-0.5
Peripeduncular areaipsiPPA3
Peripeduncular nucleusipsiPP1
Retrorubral nucleusipsiRR2
Locus coeruleusipsiLC0.5
Reticular systemipsiRF1
MyelencephalonipsiMYC2
Dorsal raphe nucleusipsiDR2
Dorsal raphe nucleus central partipsiDRcep2
Dorsal raphe nucleus dorsolateral partipsiDRdL1
Dorsal raphe nucleus lateral partipsiDRLa1
Dorsal raphe nucleus median partipsiDRM1
Dorsal raphe nucleus rostral partipsiDRr2
Dorsal raphe nucleus ventrolateral partipsiDRVL1
Dorsoventral extent of the dorsal raphe nucleusipsiDRdv-0.5
Dorsal raphe nucleus mediolateral partipsiDRML-0.5
Median raphe nucleusipsiMnR2
Intralaminar nuclei of the dorsal thalamusipsiILM1
Central medial thalamic nucleusipsiCM3
Central medial thalamic nucleus caudal partipsiCMca1
Centrolateral thalamic nucleusipsiCL3
Centrolateral thalamic nucleus caudal partipsiCLc2
Paracentral thalamic nucleusipsiPC3
Parafascicular thalamic nucleusipsiPF3
Posterior thalamic nuclear groupipsiPo3
Posterior thalamic nuclear group triangular part nociceptive specific neuronsipsiPoTS2
Suprageniculate thalamic nucleusipsiSG-0.5
Mediodorsal thalamic nucleus caudal poleipsiMDCaP0
Midline group of the dorsal thalamus caudal regionsipsiMCTN1
Ventrolateral thalamic nucleusipsiVL1
Ventral posterolateral thalamic nucleusipsiVPL1.5
Ventral posteromedial thalamic nucleusipsiVPM3
Ventromedial thalamic nucleusipsiVM1
Ethmoid thalamic nucleusipsiEth1
Intralaminar nuclei caudal partipsiILNc1
Posterior intralaminar thalamic nucleusipsiPIL1
Parafascicular nucleusipsiPFa-0.5
Lateral posterior thalamic nucleusipsiLP-0.5
Caudomedial lateral posterior thalamic nucleusipsiLPcm-0.5
Medial part of the mediocaudal part of the lateral posterior thalamic nucleusipsiLPcmm-0.5
Medial part of the lateral posterior thalamic nucleus mediocaudal partipsiLPMCM-0.5
Posterior groupipsiPTG2.5
Posterior group caudal partipsiPTGC-0.5
Subparafascicular thalamic nucleusipsiSPF-0.5
Lateral subparafascicular thalamic nucleusipsiSPFL-0.5
Ventral thalamus caudal partipsiVNTC-0.5
Ventral thalamus dorsomedial partipsiVNTdm-0.5
Lateral aspect of the ventral thalamic nucleusipsiVNTL-0.5
Amygdaloid complexipsiAC2
Basolateral amygdaloid nucleusipsiBL2
Basolateral nucleus lateral partipsiBLLP2
Basolateral nucleus medial portionipsiBLmp2
Basolateral nucleus rostral partipsiBLRP2
Basomedial amygdaloid nucleusipsiBM1
Globus pallidusipsiGP1
Ventral pallidumipsiVP1
Rostral striatumipsiCPur0
Subiculum ventral partipsiSv3
Retrosplenial agranular cortexipsiRSA3
Anterior cingulate cortexipsiACC2
Cingulate cortex area 1 caudal partipsiCg1c1
Frontal association cortexipsiFrA2
Temporal association area 2 dorsal partipsiTe2D-0.5
Temporal association area 3 ventral partipsiTe3V3
Temporal association cortex 1ipsiTeA2
Dorsal temporal association cortex 1ipsiTed3
Ventral temporal association cortexipsiTev-0.5
Auditory regionsipsiAU-0.5
Motoric regionsipsiM3
Rostral forelimb motor areaipsiRFMA1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS13
Posteromedial barrel subfield C2ipsiPMBSFC23
Posteromedial barrel subfield D1ipsiPMBSFD13
Posteromedial barrel subfield D2ipsiPMBSFD23
Posteromedial barrel subfield D5ipsiPMBSFD53
Primary visual cortexipsiV10
Secondary visual cortexipsiV20
Dorsoventral extent of the secondary visual cortex lateral area layersipsiV2LDVL3
Secondary visual cortex lateral area layer 2ipsiV2LL21
Secondary visual cortex lateral area layer 3ipsiV2LL31
Ventrolateral orbital areaipsiVLO1
Dorsal geniculate nucleus lateral partipsiDLGl-0.5
Medial geniculate nucleusipsiMG-0.5
Medial geniculate nucleus medial partipsiMGM-0.5
Medial geniculate nucleus medial part marginal zoneipsiMGMMa1
Substantia nigra A9contraSN0.5
Substantia nigra compact partcontraSNC0.5
Substantia nigra lateral partcontraSNL2
Substantia nigra reticular partcontraSNR0.5
Ventral tegmental area A10contraVTA0.5
Peripeduncular areacontraPPA0
Retrorubral nucleuscontraRR0.5
Basolateral amygdaloid nucleuscontraBL1
Basolateral nucleus lateral partcontraBLLP1
Basolateral nucleus medial portioncontraBLmp1
Basolateral nucleus rostral partcontraBLRP0.5
Retrosplenial agranular cortexcontraRSA1
Anterior cingulate cortexcontraACC2
Frontal association cortexcontraFrA2
Dorsal temporal association cortex 1contraTed3
Rostral forelimb motor areacontraRFMA1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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