University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Internal capsule left


Abbreviation
ic
Color       
Superior regionsCapsules

SynonymsAbbr.Language
Capsula interna Lat
Internal capsuleicEng

SubregionsSide
Adjacent and dorsomedial to the internal capsuleleft
Anterior limb of the internal capsuleleft
Anteromedial edge of the internal capsuleleft
Around internal capsuleleft
Caudal internal capsuleleft
Dorsal internal capsuleleft
Dorsal to dorsolateral half of the internal capsuleleft
Dorsolateral half of the internal capsuleleft
Dorsomedial part of the internal capsuleleft
Lateral portion of the internal capsuleleft
Medial border of the internal capsuleleft
Medial border Of the internal capsuleleft
Medial internal capsuleleft
Mediolateral surroundingof the internal capsuleleft
Middle part of the internal capsuleleft
Narrow band bordered dorsally by the internal capsule and ventrally by optic tractleft
Narrow strip betweeen internal capsule and optic tractleft
Tip of the internal capsuleleft
Ventral part of internal capsuleleft
Ventral portion of the internal capsuleleft
Ventrolateral portion of the internal capsuleleft
Internal capsule rostromedial portionleft
Ventromedial part of the internal capsuleleft
Internal capsule central partleft
Internal capsule central lateral partleft
Posterior limb of the internal capsuleleft

Output to

NameSideAbbr.WeightDetails
Parabrachial nucleus medialipsiPBnMe-0.5
Dorsal column nucleiipsiDCN-0.5
Lateral preoptic areaipsiLPO-2
Medial preoptic areaipsiMPA-2
Lateral hypothalamic areaipsiLH-2
Anterior hypothalamic areaipsiAHA-2
Area periventricularis hypothalamica communis [Regio hypothalamus caudalis]ipsiPeRHC-2
Dorsal hypothalamic areaipsiDA-2
Ventromedial hypothalamic nucleusipsiVMH-2
Arcuate nucleusipsiArc-2
Paraventricular nucleus of the hypothalamus magnocellular division anterior magnocellular partipsiPaAMa-2
Paraventricular hypothalamic nucleus parvicellular division dorsal partipsiPaPcD-2
Paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPa-2
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP-2
Posterior magnocellular subdivision of the paraventricular hypothalamic nucleusipsiPaPoM-2
Paraventricular nucleus medial parvocellular partipsiPaMep-2
Suprachiasmatic nucleusipsiSCh-2
Supraoptic nucleus [Supraoptic region]ipsiSO-2
Perifornical nucleusipsiPeF-2
Retrochiasmatic areaipsiRCh-2
ThalamusipsiT-2
Central medial thalamic nucleusipsiCM-0.5
Centrolateral thalamic nucleusipsiCL-0.5
Parafascicular thalamic nucleusipsiPF-0.5
Ventral posterior thalamic complex medial partipsiVPTm-2
Rostral half of the ventral posterior thalamic complex medial partipsiVPTmrh-2
Ventrobasal complexipsiVB0
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Dorsolateral ventral posteromedial thalamic nucleusipsiVPMdL-0.5
Ventromedial thalamic nucleusipsiVM-0.5
Reticular thalamic nucleusipsiRt2
Tuber cinereum areaipsiTC-2
Lateral habenular nucleus lateral partipsiLHbL3
Posterior lobe of pituitaryipsiPPit-2
Amygdaloid complexipsiAC-1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL-2
Bed nucleus of the stria terminalis medial divisionipsiBSTM-2
Globus pallidusipsiGP-2
Medial globus pallidusipsiMGP-0.5
Globus pallidus rostrocaudal middleipsiGPrcm-2
Medial striatumipsiCPum-2
Cerebral cortexipsiCEC2
NeocortexipsiNEOCX0
Frontal association cortexipsiFrA-2
Parietal association cortexipsiPtA-2
Temporal association cortex 1ipsiTeA-2
Frontal polar cortexipsiFP0
Somatomotoric regionsipsiSMR-2
Motoric regionsipsiM3
Lateral agranular prefrontal cortexipsiAGl-2
Medial agranular prefrontal cortexipsiAGm-2
Sensory regionsipsiSR-2
Anterolateral somatosensory cortex layer 2ipsiALSRL2-0.5
Anterolateral somatosensory cortex layer 3ipsiALSRL3-0.5
Anterolateral somatosensory cortex layer 4ipsiALSRL4-0.5
Anterolateral somatosensory cortex layer 5ipsiALSRL5-0.5
Anterolateral somatosensory cortex layer 6ipsiALSRL6-0.5
Primary somatosensory cortexipsiS1-0.5
Primary somatosensory cortex trunk regionipsiS1Tr-0.5
Primary somatosensory cortex trunk region layer 3ipsiS1TrL3-0.5
Primary somatosensory cortex trunk region layer 4ipsiS1TrL4-0.5
Primary somatosensory cortex trunk region layer 5ipsiS1TrL5-0.5
Primary somatosensory cortex trunk region layer 6ipsiS1TrL6-0.5
Primary somatosensory cortex posteromedial partipsiS1PM-0.5
Primary somatosensory cortex posteromedial part layer 2ipsiS1PML2-0.5
Primary somatosensory cortex posteromedial part layer 3ipsiS1PML3-0.5
Primary somatosensory cortex posteromedial part layer 4ipsiS1PML4-0.5
Primary somatosensory cortex posteromedial part layer 5ipsiS1PML5-0.5
Primary somatosensory cortex posteromedial part layer 6ipsiS1PML6-0.5
Visual regionsipsiVR0
Anterior commissureipsiac-2
Lateral geniculate complexipsiLG0

Input from

NameSideAbbr.WeightDetails
Inferior colliculusipsiICOL1
Substantia nigra compact partipsiSNC-0.5
Substantia nigra compact part ventral tieripsiSNCV-0.5
Deep cerebellar nucleiipsiDNC-0.5
Pontine taste areaipsiPTA-2
Raphe magnus nucleus rostral partipsiRMgR-0.5
Dorsal column nucleiipsiDCN-0.5
Basal forebrainipsiBAF-2
Lateral hypothalamic areaipsiLH-2
Mammillary bodyipsiCMAM0
Dorsal thalamusipsiDOR-2
Central medial thalamic nucleusipsiCM-0.5
Centrolateral thalamic nucleusipsiCL-0.5
Gelatinosus thalamic nucleusipsiG-2
Paracentral thalamic nucleusipsiPC-2
Parafascicular thalamic nucleusipsiPF-0.5
Lateral group of the dorsal thalamusipsiLAT-2
Mediodorsal thalamic nucleusipsiMD-2
Ventral group of the dorsal thalamusipsiVENT-2
Ventral posterior thalamic complex medial partipsiVPTm3
Ventrobasal complexipsiVB-0.5
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Ventromedial thalamic nucleusipsiVM-0.5
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt-2
Ventromedial thalamic nucleus lateral partipsiVML-2
Lateral posterior thalamic nucleusipsiLP-2
Central amygdaloid nucleusipsiCe-2
Globus pallidusipsiGP-0.5
Medial globus pallidusipsiMGP1
Caudate putamenipsiCPu1.5
Medial striatumipsiCPum-0.5
Caudal striatumipsiCPuc1
Dorsal striatumipsiCPud3
Rostral striatumipsiCPur-0.5
Ventral striatumipsiCPuv2
Subthalamic nucleusipsiSTh-0.5
Subthalamic nucleus medial two-thirdsipsiSThMtt0
Retrosplenial agranular cortexipsiRSA-0.5
Retrosplenial granular cortex b region rostrocaudal middle layersipsiRSGbrcmL-2
Cingulate cortex area 3 layer 5ipsiCg3L5-2
Posterior cingulate cortexipsiPCC-10
Posterior cingulate cortex granular partipsiPCCg-10
Posterior cingulate cortex agranular partipsiPCCag-10
Prelimbic cortexipsiPrL-2
Frontal association cortexipsiFrA-0.5
Frontal association cortex layer 5ipsiFrALL5-2
Parietal cortex area 1 caudal partipsiPar1c-2
Parietal cortex area 1 rostral partipsiPar1R-2
Granular insular cortex layer 6ipsiGIL6-0.5
Dorsal peduncular cortex deep layersipsiDPdL-2
Somatomotoric regionsipsiSMR-2
Motoric regionsipsiM-0.5
Lateral prefrontal cortexipsilPFC-2
Rostral part of lateral agranular prefrontal cortex layer 5ipsiAGlrL5-2
Whiskers motor cortex layer 5ipsiWMCxL51
Whiskers motor cortex layer 6ipsiWMCxL61
Medial prefrontal cortexipsimPFC-2
Medial agranular prefrontal cortex rostral part layer 5ipsirAGmL5-2
Primary somatosensory cortexipsiS1-0.5
Posteromedial barrel subfieldipsiPMBSF-0.5
Posteromedial barrel subfield C2ipsiPMBSFC2-2
Posteromedial barrel subfield D1ipsiPMBSFD1-2
Posteromedial barrel subfield D2ipsiPMBSFD2-2
Posteromedial barrel subfield D5ipsiPMBSFD5-2
Primary somatosensory cortex barrel field bottom of layer 3ipsiS1BbF3-2
Primary somatosensory cortex barrel field layer 5ipsiS1BF5-2
Somatosensory cortex layer 5bipsiSRL5b1
Lateral orbital cortex deep layersipsiLOLad-2
Principal sensory trigeminal nucleuscontraPr53
Nucleus of the solitary tractcontraSol3
Cuneate nucleuscontraCu3
GracilecontraGra3
Hindlimb motor cortexcontraHMCx-2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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