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Rat connectome



Spinal cord layer 8 S1 left


Abbreviation
SCL8S1
Color       
Superior regionsIntermediate zone S1

SynonymsAbbr.Language
Spinal cord layer 8 S1SCL8S1Eng

SubregionsSide
Posterior biceps interneurons of spinal cord layer 8 S1left
Quadriceps interneurons of spinal cord layer 8 S1left

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC3
Dorsal periaqueductal grayipsiDPAG1
Lateral periaqueductal grayipsiLPAG1
Ventrolateral periaqueductal grayipsiVLPAG0.5
Laterodorsal tegmental nucleusipsiLDTg-0.5
Anterior lobeipsiAnL3
Reticular systemipsiRF3
Medial pontomedullary reticular formationipsiMPomRF-0.5
Pontine reticular nucleus oral partipsiPnO1
Parabrachial nucleusipsiPB-0.5
Lateral parabrachial nucleus lateral partipsiLPBL0
Parabrachial nucleus central lateral partipsiPBCeL0
Parabrachial nucleus dorsolateral partipsiPBDL0
Parabrachial nucleus superior lateralipsiPBSL0
Gigantocellular reticular nucleusipsiGi1
Lateral reticular nucleusipsiLRt3
Caudal part to the midportion of the lateral reticular nucleusipsiCaLRtMp-0.5
Caudal third of the caudomedial part of the lateral reticular nucleusipsiLRtcmCt-0.5
Subnucleus reticularis ventralis medullae oblongataeipsiSRV-0.5
Medullary reticular nucleus dorsal partipsiMdDd-0.5
Spinal vestibular nucleusipsiSpVe-0.5
Vestibular nucleiipsiVnc1
Nucleus of the solitary tractipsiSol3
Raphe pallidus nucleusipsiRPa1
Paragigantocellular reticular nucleusipsiPGi1
Lateral paragigantocellular nucleusipsiLPGi-0.5
HypothalamusipsiHYPO1
Lateral hypothalamic areaipsiLH-0.5
Posterior hypothalamic areaipsiPHA-0.5
ThalamusipsiT3
Lateral group of the dorsal thalamusipsiLAT0
Ventrobasal complexipsiVB-0.5
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Medial thalamic zoneipsiMTZ0
Central amygdaloid nucleus anterior partipsiCeAn-0.5
Cervical segment 1ipsiCS12
Ventral horn C1ipsiVHC11
Cervical segment 2ipsiCS22
Ventral horn C2ipsiVHC21
Cervical segment 3ipsiCS32
Ventral horn C3ipsiVHC31
Cervical segment 4ipsiCS42
Cervical segment 5ipsiCS52
Cervical segment 6ipsiCS62
Spinal cord layer 7 C6ipsiSCL7C63
Spinal cord layer 8 C6ipsiSCL8C63
Cervical segment 7ipsiCS72
Spinal cord layer 7 C7ipsiSCL7C73
Spinal cord layer 8 C7ipsiSCL8C73
Spinal cord layer 9 C7ipsiSCL9C7-0.5
Cervical segment 8ipsiCS82
Thoracal segment 1ipsiT12
Thoracal segment 2ipsiT22
Thoracal segment 3ipsiT32
Thoracal segment 4ipsiT42
Thoracal segment 5ipsiT52
Thoracal segment 6ipsiT62
Thoracal segment 7ipsiT72
Thoracal segment 8ipsiT82
Thoracal segment 9ipsiT92
Spinal cord layer 7 T9ipsiSCL7T93
Spinal cord layer 8 T9ipsiSCL8T93
Thoracal segment 10ipsiT102
Thoracal segment 11ipsiT112
Thoracal segment 12ipsiT122
Thoracal segment 13ipsiT132
Lumbar segment 1ipsiL12
Lumbar segment 2ipsiL22
Lumbar segment 3ipsiL32
Lumbar segment 4ipsiL42
Area X L4ipsiSCL10L41
Spinal cord layer 8 L4ipsiSCL8L41
Lumbar segment 5ipsiL52
Interneuron groups of layer 9 L5ipsiiGL9L5-0.5
Motoneuron groups of layer 9 L5ipsiMGL9L5-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Lumbar segment 6ipsiL62
Interneuron groups of layer 9 L6ipsiiGL9L6-0.5
Motoneuron groups of layer 9 L6ipsiMGL9L6-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Sacral segment 1ipsiSa12
Interneuron groups of layer 9 S1ipsiiGL9S1-0.5
Motoneuron groups of layer 9 S1ipsiMGL9S1-0.5
Sacral segment 2ipsiSa22
Interneuron groups of layer 9 S2ipsiiGL9S2-0.5
Motoneuron groups of layer 9 S2ipsiMGL9S2-0.5
Sacral segment 3ipsiSa32
Interneuron groups of layer 9 S3ipsiiGL9S3-0.5
Motoneuron groups of layer 9 S3ipsiMGL9S3-0.5
Sacral segment 4ipsiSa42
MesencephaloncontraMEC3
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Dorsal periaqueductal graycontraDPAG3
Lateral periaqueductal graycontraLPAG3
Ventrolateral periaqueductal graycontraVLPAG0.5
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Laterodorsal tegmental nucleuscontraLDTg-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Anterior lobecontraAnL0.5
Reticular systemcontraRF3
Pontine reticular nucleus oral partcontraPnO3
Lateral parabrachial nucleus lateral partcontraLPBL0
Parabrachial nucleus central lateral partcontraPBCeL0
Parabrachial nucleus dorsolateral partcontraPBDL0
Parabrachial nucleus superior lateralcontraPBSL0
Gigantocellular reticular nucleuscontraGi3
Gigantocellular reticular nucleus lateral partcontraGirL3
Lateral reticular nucleuscontraLRt3
Caudal part to the midportion of the lateral reticular nucleuscontraCaLRtMp-0.5
Caudomedial part of the lateral reticular nucleuscontraLRtcm-0.5
Caudal third of the caudomedial part of the lateral reticular nucleuscontraLRtcmCt-0.5
Subnucleus reticularis ventralis medullae oblongataecontraSRV-0.5
Spinal vestibular nucleuscontraSpVe-0.5
Vestibular nucleicontraVnc3
Nucleus of the solitary tractcontraSol3
Raphe pallidus nucleuscontraRPa1
Paragigantocellular reticular nucleuscontraPGi3
Lateral paragigantocellular nucleuscontraLPGi-0.5
Paragigantocellular reticular nucleus medial partcontraPGiM-0.5
HypothalamuscontraHYPO3
ThalamuscontraT3
Lateral group of the dorsal thalamuscontraLAT0
Ventrobasal complexcontraVB-0.5
Ventral posterolateral thalamic nucleuscontraVPL-0.5
Ventral posteromedial thalamic nucleuscontraVPM-0.5
Medial thalamic zonecontraMTZ0
Pretectal regioncontraPRT-0.5
Lateral funiculuscontralf-2
Cervical segment 1contraCS11.5
Ventral horn C1contraVHC14
Cervical segment 2contraCS21.5
Ventral horn C2contraVHC24
Cervical segment 3contraCS31.5
Ventral horn C3contraVHC34
Cervical segment 4contraCS41.5
Cervical segment 5contraCS51.5
Cervical segment 6contraCS61.5
Spinal cord layer 7 C6contraSCL7C63
Spinal cord layer 8 C6contraSCL8C63
Cervical segment 7contraCS71.5
Spinal cord layer 7 C7contraSCL7C73
Spinal cord layer 8 C7contraSCL8C73
Spinal cord layer 9 C7contraSCL9C7-0.5
Cervical segment 8contraCS81.5
Thoracal segment 1contraT11.5
Thoracal segment 2contraT21.5
Thoracal segment 3contraT31.5
Thoracal segment 4contraT41.5
Thoracal segment 5contraT51.5
Thoracal segment 6contraT61.5
Thoracal segment 7contraT71.5
Thoracal segment 8contraT81.5
Thoracal segment 9contraT91.5
Spinal cord layer 7 T9contraSCL7T93
Spinal cord layer 8 T9contraSCL8T93
Thoracal segment 10contraT101.5
Thoracal segment 11contraT111.5
Thoracal segment 12contraT121.5
Thoracal segment 13contraT131.5
Lumbar segment 1contraL11.5
Lumbar segment 2contraL21.5
Lumbar segment 3contraL31.5
Lumbar segment 4contraL41.5
Area X L4contraSCL10L41
Spinal cord layer 8 L4contraSCL8L41
Lumbar segment 5contraL51.5
Lumbar segment 6contraL61.5
Sacral segment 1contraSa11.5
Sacral segment 2contraSa21.5
Sacral segment 3contraSa31.5
Sacral segment 4contraSa41.5
StomachipsiOrgsStomS-1
Bulbospongiosus muscleipsiMuscbsp1
Ischiocavernosus muscleipsiMuscicav-10
Musculus abductor caudae dorsalisipsiMuscAbdCaDo-10
CervixipsiOrgUTC-10
Bulbospongiosus musclecontraMuscbsp1
Musculus abductor caudae dorsaliscontraMuscAbdCaDo-10

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
A5 noradrenaline cellsipsiA52
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca3
Medial reticular formationipsiRFm-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Mesencephalic reticular formationipsiMRF-0.5
Pontine reticular nucleusipsiPRN3
Dorsolateral pontine reticular formationipsiPRNDL1
Pontine reticular nucleus oral partipsiPnO1
Pontine reticular nucleus caudal partipsiPNC1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Gigantocellular reticular nucleus rostral partipsiGiRo-0.5
Subcoeruleus nucleusipsiSubC3
Lateral paragigantocellular nucleusipsiLPGi-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm0
Lateral hypothalamic areaipsiLH1
Paraventricular hypothalamic nucleusipsiPa0.5
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regions layer 5ipsiSMRL53
Area X C4ipsiSCL10C4-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Spinal cord layer 4 C4ipsiSCL4C4-0.5
Spinal cord layer 7 C4ipsiSCL7C4-0.5
Spinal cord layer 8 C4ipsiSCL8C4-0.5
Area X C5ipsiSCL10C5-0.5
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Spinal cord layer 4 C5ipsiSCL4C5-0.5
Spinal cord layer 7 C5ipsiSCL7C5-0.5
Spinal cord layer 8 C5ipsiSCL8C5-0.5
Area X C6ipsiSCL10C6-0.5
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 4 C6ipsiSCL4C6-0.5
Spinal cord layer 7 C6ipsiSCL7C6-0.5
Spinal cord layer 8 C6ipsiSCL8C6-0.5
Dorsal root ganglion L1ipsiDRGL10
Dorsal root ganglion L2ipsiDRGL20
Dorsal root ganglion L3ipsiDRGL30
Dorsal root ganglion L4ipsiDRGL40
Dorsal root ganglion L5ipsiDRGL50
Dorsal root ganglion L6ipsiDRGL60
Dorsal root ganglion S1ipsiDRGS12
Intermediate gray layer of the superior colliculuscontraInG-0.5
Locus coeruleuscontraLC1
Caudal part of ventral locus coeruleuscontraLCveca0.5
Medial reticular formationcontraRFm-0.5
Mesencephalic reticular formationcontraMRF-0.5
Pontine reticular nucleus oral partcontraPnO0.5
Pontine reticular nucleus caudal partcontraPNC0.5
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Somatomotoric regions layer 5contraSMRL53
Dorsal root ganglion S1contraDRGS12

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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