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Rat connectome



Intermediate gray layer of the superior colliculus right


Abbreviation
InG
Color       
Superior regionsSuperior colliculus intermediate layers

SynonymsAbbr.Language
 SCig 
Superior colliculus intermediate grey layer  
Superior colliculus intermediate gray layer  
Lamina 4 of the superior colliculus  
Stratum griseum intermedium  
Intermediate layer of the superior colliculus  
Lamina IV of the superior colliculus  
Stratum griseum intermediale of the superior colliculus Eng
Stratum griseum intermediateSGIEng
Superior colliculus stratum griseum intermediale Eng
Stratum griseum intermediale Lat
Intermediate gray layer of superior colliculus Eng
Layer 4 of the superior colliculus  
Intermediate gray layer of the superior colliculusInGEng
Intermediate gray  

SubregionsSide
Upper part of the intermediate gray layer of the superior colliculusright
Intermediate gray layer of the anteriorposterior superior colliculusright
Intermediate gray layer of the lateral superior colliculusright
Intermediate gray layer of the posterolateral superior colliculusright
Intermediate gray layer of the superior colliculus rostral partright
Caudal intermediate gray layer of the superior colliculusright
Medial part of the intermediate gray layer of the superior colliculusright
Lateral part of the ventral tier of the stratum griseum intermediate of the superior colliculusright
Caudolateral stratum griseum intermediale of the superior colliculusright
Intermediate gray layer of the superior colliculus ventral partright
Lower part of the intermediate gray layer of the superior colliculusright
Intermediate gray layer of the superior colliculus sublayer bright

Output to

NameSideAbbr.WeightDetails
Central graycontraCG1
Inferior colliculuscontraICOL1
Interstitial nucleus of CajalcontraInC1.5
Medial reticular formationcontraRFm-0.5
Pontine reticular nucleus oral partcontraPnO-0.5
Pontine reticular nucleus paramedian partcontraPRNpm3
Cuneiforme nucleus medial partcontraCnFm1
Parabrachial nucleus dorsal partcontraPBD1
Facial nucleus intermediate partcontra7i2
Facial nucleus lateral subnucleuscontra7L3
Facial nucleus ventral intermediate subnucleuscontra7VI1
Facial nucleus dorsal intermediate subnucleuscontra7DI2
Principal sensory trigeminal nucleus ventral partcontraPr5v1
Paragigantocellular reticular nucleuscontraPGi-0.5
Zona incertacontraZI0.5
Spinal cord layer 5 C1contraSCL5C1-0.5
Spinal cord layer 7 C1contraSCL7C1-0.5
Spinal cord layer 8 C1contraSCL8C1-0.5
Spinal cord layer 5 C2contraSCL5C2-0.5
Spinal cord layer 7 C2contraSCL7C2-0.5
Spinal cord layer 8 C2contraSCL8C2-0.5
Spinal cord layer 5 C3contraSCL5C3-0.5
Spinal cord layer 7 C3contraSCL7C3-0.5
Spinal cord layer 8 C3contraSCL8C3-0.5
Spinal cord layer 5 C4contraSCL5C4-0.5
Spinal cord layer 7 C4contraSCL7C4-0.5
Spinal cord layer 8 C4contraSCL8C4-0.5
Spinal cord layer 5 C5contraSCL5C5-0.5
Spinal cord layer 7 C5contraSCL7C5-0.5
Spinal cord layer 8 C5contraSCL8C5-0.5
Spinal cord layer 5 C6contraSCL5C6-0.5
Spinal cord layer 7 C6contraSCL7C6-0.5
Spinal cord layer 8 C6contraSCL8C6-0.5
Spinal cord layer 5 C7contraSCL5C7-0.5
Spinal cord layer 7 C7contraSCL7C7-0.5
Spinal cord layer 8 C7contraSCL8C7-0.5
Spinal cord layer 5 C8contraSCL5C8-0.5
Spinal cord layer 7 C8contraSCL7C8-0.5
Spinal cord layer 8 C8contraSCL8C8-0.5
Spinal cord layer 5 T1contraSCL5T1-0.5
Spinal cord layer 7 T1contraSCL7T1-0.5
Spinal cord layer 8 T1contraSCL8T1-0.5
Spinal cord layer 5 T2contraSCL5T2-0.5
Spinal cord layer 7 T2contraSCL7T2-0.5
Spinal cord layer 8 T2contraSCL8T2-0.5
Spinal cord layer 5 T3contraSCL5T3-0.5
Spinal cord layer 7 T3contraSCL7T3-0.5
Spinal cord layer 8 T3contraSCL8T3-0.5
Spinal cord layer 5 T4contraSCL5T4-0.5
Spinal cord layer 7 T4contraSCL7T4-0.5
Spinal cord layer 8 T4contraSCL8T4-0.5
Spinal cord layer 5 T5contraSCL5T5-0.5
Spinal cord layer 7 T5contraSCL7T5-0.5
Spinal cord layer 8 T5contraSCL8T5-0.5
Spinal cord layer 5 T6contraSCL5T6-0.5
Spinal cord layer 7 T6contraSCL7T6-0.5
Spinal cord layer 8 T6contraSCL8T6-0.5
Spinal cord layer 5 T7contraSCL5T7-0.5
Spinal cord layer 7 T7contraSCL7T7-0.5
Spinal cord layer 8 T7contraSCL8T7-0.5
Spinal cord layer 5 T8contraSCL5T8-0.5
Spinal cord layer 7 T8contraSCL7T8-0.5
Spinal cord layer 8 T8contraSCL8T8-0.5
Spinal cord layer 5 T9contraSCL5T9-0.5
Spinal cord layer 7 T9contraSCL7T9-0.5
Spinal cord layer 8 T9contraSCL8T9-0.5
Spinal cord layer 5 T10contraSCL5T10-0.5
Spinal cord layer 7 T10contraSCL7T10-0.5
Spinal cord layer 8 T10contraSCL8T10-0.5
Spinal cord layer 5 T11contraSCL5T11-0.5
Spinal cord layer 7 T11contraSCL7T11-0.5
Spinal cord layer 8 T11contraSCL8T11-0.5
Spinal cord layer 5 T12contraSCL5T12-0.5
Spinal cord layer 7 T12contraSCL7T12-0.5
Spinal cord layer 8 T12contraSCL8T12-0.5
Spinal cord layer 5 T13contraSCL5T13-0.5
Spinal cord layer 7 T13contraSCL7T13-0.5
Spinal cord layer 8 T13contraSCL8T13-0.5
Spinal cord layer 5 L1contraSCL5L1-0.5
Spinal cord layer 7 L1contraSCL7L1-0.5
Spinal cord layer 8 L1contraSCL8L1-0.5
Spinal cord layer 5 L2contraSCL5L2-0.5
Spinal cord layer 7 L2contraSCL7L2-0.5
Spinal cord layer 8 L2contraSCL8L2-0.5
Spinal cord layer 5 L3contraSCL5L3-0.5
Spinal cord layer 7 L3contraSCL7L3-0.5
Spinal cord layer 8 L3contraSCL8L3-0.5
Spinal cord layer 5 L4contraSCL5L4-0.5
Spinal cord layer 7 L4contraSCL7L4-0.5
Spinal cord layer 8 L4contraSCL8L4-0.5
Spinal cord layer 5 L5contraSCL5L5-0.5
Spinal cord layer 7 L5contraSCL7L5-0.5
Spinal cord layer 8 L5contraSCL8L5-0.5
Spinal cord layer 5 L6contraSCL5L6-0.5
Spinal cord layer 7 L6contraSCL7L6-0.5
Spinal cord layer 8 L6contraSCL8L6-0.5
Spinal cord layer 5 S1contraSCL5S1-0.5
Spinal cord layer 7 S1contraSCL7S1-0.5
Spinal cord layer 8 S1contraSCL8S1-0.5
Spinal cord layer 5 S2contraSCL5S2-0.5
Spinal cord layer 7 S2contraSCL7S2-0.5
Spinal cord layer 8 S2contraSCL8S2-0.5
Spinal cord layer 5 S3contraSCL5S3-0.5
Spinal cord layer 7 S3contraSCL7S3-0.5
Spinal cord layer 8 S3contraSCL8S3-0.5
Spinal cord layer 5 S4contraSCL5S4-0.5
Spinal cord layer 7 S4contraSCL7S4-0.5
Spinal cord layer 8 S4contraSCL8S4-0.5
Central grayipsiCG2
Nucleus of DarkschewitschipsiDk0
Oculomotor nucleusipsi30
Inferior colliculusipsiICOL2
Brachium of the inferior colliculusipsibic0.5
Superior colliculusipsiSC-0.5
Superior colliculus superficial layersipsiSCs-0.5
Optic nerve layer of the superior colliculusipsiOp-0.5
Superior colliculus intermediate and deep layersipsiSCidLa-0.5
Deep gray layer of the superior colliculusipsiDpG2
Substantia nigra compact partipsiSNC2
Substantia nigra reticular partipsiSNR-0.5
Peripeduncular nucleusipsiPP2
Edinger Westphal nucleusipsiEW2
Interstitial nucleus of CajalipsiInC3
Deep mesencephalic nucleusipsiDpMe-0.5
Pontine reticular nucleus paramedian partipsiPRNpm1.5
Cuneiforme nucleus medial partipsiCnFm2
Parabrachial nucleus dorsal partipsiPBD2
Facial nucleus intermediate partipsi7i1
Facial nucleus dorsal intermediate subnucleusipsi7DI1
Juxtatrigeminal areaipsiJx5-0.5
Trigeminal sensory nuclear complexipsiTSNC-0.5
Spinal trigeminal nucleus oral part ventromedial partipsiSp5OVM-0.5
Junction of principal trigeminal nucleus and spinal trigeminal nucleus oral partipsiPr5JSp5O-0.5
Paragigantocellular reticular nucleusipsiPGi1
Lateral hypothalamic area [Lateral zone tuberal level]ipsiLHtu1
Medial division of the hypothalamusipsiMdH0.5
Posterior hypothalamic areaipsiPHA3
Suprachiasmatic nucleusipsiSCh3
Anterior group of the dorsal thalamusipsiATN2
Dorsal part of the lateral geniculate complexipsiLGd1
Ventral part of the lateral geniculate complexipsiLGv1
Posterior thalamic nuclear groupipsiPo1
Suprageniculate thalamic nucleusipsiSG2
Mediodorsal thalamic nucleusipsiMD-0.5
Ventral posterolateral thalamic nucleus caudal partipsiVPLca-0.5
Posterior intralaminar thalamic nucleusipsiPIL2
Lateral thalamic nuclear groupipsiLTNG-0.5
Lateral posterior thalamic nucleusipsiLP2
Laterodorsal thalamic nucleusipsiLD2
Zona incertaipsiZI3
Field CA3 of hippocampusipsiCA33
Medial geniculate nucleusipsiMG2
Medial geniculate nucleus medial partipsiMGM2
Prebrachial segmentsipsiPSeg3

Input from

NameSideAbbr.WeightDetails
Sagulum nucleuscontraSag0
Nuclei of the lateral lemniscus dorsal partcontraNLLD0
Nuclei of the lateral lemniscus ventral partcontraNLLV1
Paralemniscal nucleuscontraPL3
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Dorsolateral periaqueductal gray intermediate partcontraDLPAGim1
Dorsolateral periaqueductal gray rostral partcontraPAGdlr0
Lateral periaqueductal gray caudalcontraLPAGC0
Lateral periaqueductal gray intermediatecontraLPAGim1
Lateral periaqueductal gray rostral partcontraLPAGR0
Superior colliculuscontraSC1
Superior colliculus intermediate layerscontraSCi0
Peduncularpontine nucleuscontraPPN0
Substantia nigra reticular partcontraSNR3
Substantia nigra reticular part dorsolateral tiercontraSNRDL0
Substantia nigra reticular part ventromedial tiercontraSNRVM0
Laterodorsal tegmental nucleuscontraLDTg2
Pedunculopontine tegmental nucleus pars compactacontraPPNC2
Posterior interposed nucleuscontraCERpin3
Lateral cerebellar nucleuscontraCERL1
Medial cerebellar nucleuscontraMed3
Locus coeruleuscontraLC1
Nucleus incertuscontraNI0
Nucleus incertus pars dissipatacontraNId1
Mesencephalic reticular formationcontraMRF0
Pontine reticular nucleuscontraPRN0
Cuneiforme nucleuscontraCnF0
Lateral parabrachial nucleuscontraLPB0
Parabrachial nucleus medialcontraPBnMe1
Parvicellular reticular nucleuscontraPCRt1
Supragenual nucleuscontraSGe0
Intertrigeminal nucleuscontraI53
Principal sensory trigeminal nucleuscontraPr53
Principal sensory trigeminal nucleus medial partcontraPr5me0
Principal sensory trigeminal nucleus ventral partcontraPr5v1
Spinal trigeminal nucleuscontraSp5nc3
Spinal trigeminal nucleus interpolar partcontraSp5I3
Trigeminal subnucleus caudaliscontra5SSC3
Dorsal raphe nucleuscontraDR2
Olivary pretectal nucleuscontraOPT0
Lateral hypothalamic areacontraLH0
Ventromedial hypothalamic nucleuscontraVMH0
Premammillary nucleus dorsal partcontraPMD0
Suprageniculate thalamic nucleuscontraSG0
Lateral posterior thalamic nucleuscontraLP0
Zona incerta ventral caudolateral partcontraZIVCL0
Zona incerta ventral caudomedial partcontraZIVCM0
Zona incerta ventral rostrolateral partcontraZIVRL0
Zona incerta ventral rostromedial partcontraZIVRM0
Anterior pretectal nucleus caudal partcontraAPTca1
Anterior pretectal nucleus dorsal partcontraAPTD0
Anterior pretectal nucleus rostral partcontraAPTro1
Medial pretectal nucleuscontraMPT0
RetinacontraRET2
PostsubiculumcontraPost0
Retrosplenial agranular cortex layer 4contraRSAL4-0.5
Retrosplenial agranular cortex layer 5contraRSAL5-0.5
Retrosplenial agranular cortex layer 6contraRSAL6-0.5
Retrosplenial agranular cortex layer 1contraRSAL1-0.5
Retrosplenial agranular cortex layer 2contraRSAL2-0.5
Retrosplenial agranular cortex layer 3contraRSAL3-0.5
Retrosplenial granular cortexcontraRSGra0
Retrosplenial granular cortex layer 5contraRSGL5-0.5
Retrosplenial granular cortex layer 6contraRSGL6-0.5
Retrosplenial granular cortex layer 1contraRSGL1-0.5
Retrosplenial granular cortex layer 2contraRSGL2-0.5
Retrosplenial granular cortex layer 3contraRSGL3-0.5
Retrosplenial granular cortex layer 4contraRSGL4-0.5
White matter of the retrosplenial granular cortexcontraRSGraWM-0.5
Anterior cingulate cortex caudal partcontraACCc0
Anterior cingulate cortex rostral partcontraACCr0
Prelimbic cortexcontraPrL0
Infralimbic cortexcontraIL0
Parietal association cortexcontraPtA0
Temporal cortexcontraTE0
Auditory regionscontraAU0
Agranular insular cortexcontraAI0
Visceral dysgranular insular cortexcontraDIv0
Granular insular cortexcontraGI0
Ectorhinal cortexcontraA360
Caudal part of lateral agranular prefrontal cortexcontraAGlc0
Lateral agranular prefrontal cortex rostral partcontraAGlR0
Medial agranular prefrontal cortex caudal partcontracAGm0
Medial agranular prefrontal cortex rostral partcontrarAGm0
Caudal whisker areacontraCS1BF0
Rostral whisker areacontraRS1BF0
Primary somatosensory cortex oral dysgranular regioncontraS1DZO0
Primary somatosensory cortex dysgranular region caudal partcontraS1DZc0
Primary somatosensory cortex nose regioncontraS1NR0
Primary somatosensory cortex forelimb regioncontraS1FL0
Primary somatosensory cortex hindlimb regioncontraS1HL0
Primary somatosensory cortex trunk regioncontraS1Tr0
Supplemental somatosensory area rostral partcontraSSsr0
Supplemental somatosensory area caudal partcontraSSsc0
Visual regionscontraVR0
Nucleus of the posterior commissure rostral partcontraPComR0
Nucleus of the posterior commissure caudal partcontraPComC0
Precommissural nucleuscontraPrC0
Ventral lateral geniculate nucleuscontraVLG0
Lateral cervical nucleuscontraLatC3
Spinal cord layer 3 C1contraSCL3C12
Spinal cord layer 4 C1contraSCL4C12
Superficial dorsal horn C1contraSDHC12
Spinal cord layer 1 C1contraSCL1C12
Spinal cord layer 2 C1contraSCL2C12
Spinal cord layer 3 C2contraSCL3C23
Spinal cord layer 4 C2contraSCL4C23
Spinal cord layer 1 C2contraSCL1C23
Spinal cord layer 2 C2contraSCL2C23
Sagulum nucleusipsiSag0
Nuclei of the lateral lemniscus dorsal partipsiNLLD0
Nuclei of the lateral lemniscus ventral partipsiNLLV0
Paralemniscal nucleusipsiPL2
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Dorsolateral periaqueductal gray rostral partipsiPAGdlr1
Dorsolateral periaqueductal gray intermediate partipsiDLPAGim1
Lateral periaqueductal gray rostral partipsiLPAGR1
Lateral periaqueductal gray intermediateipsiLPAGim1
Lateral periaqueductal gray caudalipsiLPAGC0
Brachium of the inferior colliculusipsibic3
Superior colliculus intermediate layersipsiSCi0
Peduncularpontine nucleusipsiPPN2
Substantia nigra A9ipsiSN-0.5
Substantia nigra reticular partipsiSNR3
Substantia nigra reticular part dorsolateral tieripsiSNRDL1
Substantia nigra reticular part ventromedial tieripsiSNRVM0
Laterodorsal tegmental nucleusipsiLDTg3
Pedunculopontine tegmental nucleus pars compactaipsiPPNC3
Posterior interposed nucleusipsiCERpin0
Lateral cerebellar nucleusipsiCERL0
Medial cerebellar nucleusipsiMed1
Locus coeruleusipsiLC1
Nucleus incertusipsiNI0
Nucleus incertus pars compactaipsiNIc-0.5
Nucleus incertus pars dissipataipsiNId2
Mesencephalic reticular formationipsiMRF1
Pontine reticular nucleusipsiPRN0
Cuneiforme nucleusipsiCnF-2
Lateral parabrachial nucleusipsiLPB0
Parabrachial nucleus medialipsiPBnMe0
Parvicellular reticular nucleusipsiPCRt0
Supragenual nucleusipsiSGe0
Intertrigeminal nucleusipsiI51
Trigeminal sensory nuclear complexipsiTSNC-0.5
Principal sensory trigeminal nucleusipsiPr51
Principal sensory trigeminal nucleus medial partipsiPr5me0
Principal sensory trigeminal nucleus ventral partipsiPr5v0
Spinal trigeminal nucleusipsiSp5nc0
Spinal trigeminal nucleus interpolar partipsiSp5I-0.5
Spinal trigeminal nucleus oral partipsiSp5O-0.5
Dorsal raphe nucleusipsiDR3
Olivary pretectal nucleusipsiOPT0
Lateral zoneipsiLHA-0.5
Lateral hypothalamic areaipsiLH1
Ventromedial hypothalamic nucleusipsiVMH0
Premammillary nucleus dorsal partipsiPMD0
Ventral part of the lateral geniculate complexipsiLGv2
Suprageniculate thalamic nucleusipsiSG0
Lateral posterior thalamic nucleusipsiLP0
Zona incerta ventral rostrolateral partipsiZIVRL0
Zona incerta ventral caudolateral partipsiZIVCL0
Zona incerta ventral rostromedial partipsiZIVRM0
Zona incerta ventral caudomedial partipsiZIVCM3
Anterior pretectal nucleus caudal partipsiAPTca2
Anterior pretectal nucleus dorsal partipsiAPTD0
Anterior pretectal nucleus rostral partipsiAPTro2
Medial pretectal nucleusipsiMPT0
RetinaipsiRET2
PostsubiculumipsiPost0
Retrosplenial cortex anterior partipsiRSan4
Retrosplenial cortex posterior partipsiRSpo3
Retrosplenial cortexipsiRSCx-0.5
Retrosplenial agranular cortex layer 4ipsiRSAL43
Retrosplenial agranular cortex layer 5ipsiRSAL53
Retrosplenial agranular cortex layer 6ipsiRSAL63
Retrosplenial agranular cortex layer 1ipsiRSAL13
Retrosplenial agranular cortex layer 2ipsiRSAL23
Retrosplenial agranular cortex layer 3ipsiRSAL33
Retrosplenial granular cortexipsiRSGra0
Retrosplenial granular cortex layer 5ipsiRSGL53
Retrosplenial granular cortex layer 6ipsiRSGL63
Retrosplenial granular cortex layer 1ipsiRSGL13
Retrosplenial granular cortex layer 2ipsiRSGL23
Retrosplenial granular cortex layer 3ipsiRSGL33
Retrosplenial granular cortex layer 4ipsiRSGL43
White matter of the retrosplenial granular cortexipsiRSGraWM3
Anterior cingulate cortex caudal partipsiACCc1
Anterior cingulate cortex rostral partipsiACCr0
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL0
Frontal cortex area 2ipsiFr23
Parietal association cortexipsiPtA0
Temporal cortexipsiTE1
Auditory regionsipsiAU0
Agranular insular cortexipsiAI1
Visceral dysgranular insular cortexipsiDIv0
Granular insular cortexipsiGI1
Ectorhinal cortexipsiA360
Somatomotoric regionsipsiSMR-0.5
Caudal part of lateral agranular prefrontal cortexipsiAGlc0
Lateral agranular prefrontal cortex rostral partipsiAGlR1
Medial agranular prefrontal cortex caudal partipsicAGm2
Medial agranular prefrontal cortex rostral partipsirAGm1
Sensory regionsipsiSR3
Primary somatosensory cortexipsiS1-0.5
Posteromedial barrel subfieldipsiPMBSF2
Posteromedial barrel subfield layer 4ipsiPMBSFL4-0.5
Caudal whisker areaipsiCS1BF0
Rostral whisker areaipsiRS1BF1
Primary somatosensory cortex oral dysgranular regionipsiS1DZO1
Primary somatosensory cortex dysgranular region caudal partipsiS1DZc0
Primary somatosensory cortex nose regionipsiS1NR0
Primary somatosensory cortex forelimb regionipsiS1FL0
Primary somatosensory cortex hindlimb regionipsiS1HL1
Primary somatosensory cortex trunk regionipsiS1Tr0
Supplemental somatosensory area rostral partipsiSSsr1
Supplemental somatosensory area caudal partipsiSSsc0
Visual regionsipsiVR0
Lateral extrastriate cortexipsiVISxL1
Anterolateral cortical visual areaipsiVISal1
Nucleus of the posterior commissure rostral partipsiPComR0
Nucleus of the posterior commissure caudal partipsiPComC2
Precommissural nucleusipsiPrC0
Ventral lateral geniculate nucleusipsiVLG2
Ventral lateral geniculate nucleus ventrolateral partipsiVLGvL2
Superficial dorsal horn C1ipsiSDHC12
Spinal cord layer 3 C2ipsiSCL3C22
Spinal cord layer 4 C2ipsiSCL4C22
Spinal cord layer 1 C2ipsiSCL1C22
Spinal cord layer 2 C2ipsiSCL2C22
Deep dorsal horn C7ipsiDDHC7-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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