University of Rostock

Department of Anatomy

Neuroscience Group

  Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Lateral hypothalamic area juxtadorsomedial region right


Abbreviation
JDM
Color       
Superior regionsLateral hypothalamic area

SynonymsAbbr.Language
Lateral hypothalamic area juxtadorsomedial regionJDMEng
 LHAjdEng
Lateral hypothalamic area juxtadorsomedial regionLHAjdEng

Output to

NameSideAbbr.WeightDetails
Premammillary nucleus dorsal partcontraPMD3
Central gray pons partipsiCGP2
Nucleus of DarkschewitschipsiDk0
Dorsolateral periaqueductal grayipsiDLPAG1
Periaqueductal gray dorsal partipsiPAGd3
Periaqueductal gray medial partipsiPAGm2
Periaqueductal gray rostrolateral partipsiPAGRL3
Periaqueductal gray rostromedial divisionipsiPAGrm3
Ventrolateral periaqueductal grayipsiVLPAG4
Commissural nucleus of the inferior colliculusipsiCom3
Sublayer b of superior colliculus intermediate layersipsiSCiB2
Superior colliculus motor related intermediate gray layer sublayer aipsiSCig-a1
Superior colliculus motor related intermediate gray layer sublayer cipsiSCig-c1
Deep gray layer of the superior colliculusipsiDpG2
Peduncularpontine nucleusipsiPPN1
Ventral tegmental area A10ipsiVTA2
Interfascicular nucleusipsiIF0
Retrorubral nucleusipsiRR3
Lateral tegmental nucleusipsiLTN0.5
Laterodorsal tegmental nucleusipsiLDTg0.5
Ventral tegmental nucleusipsiVTg0
CerebellumipsiCERE0
Barringtons nucleusipsiBar4
Locus coeruleusipsiLC0.5
Nucleus incertus pars dissipataipsiNId0
Parapyramidal nucleus deep partipsiPPYd0.5
Precerebellar nucleiipsiPCN0
Magnocellular reticular nucleusipsiNRMC2
Preparasubthalamic nucleusipsiPST0.5
Midbrain reticular nucleus parvicellular partipsiMRNp2
Midbrain reticular nucleus magnocellular partipsiMRNm2
Pontine reticular nucleus oral partipsiPnO1
Pontine reticular nucleus caudal partipsiPNC2
Cuneiforme nucleusipsiCnF1
Lateral parabrachial nucleus dorsolateral partipsiLPBdL0
Lateral parabrachial nucleus external lateral partipsiLPBEL0.5
Lateral parabrachial nucleus superior lateral partipsiPBls0
Lateral parabrachial nucleus ventral partipsiLPBV0.5
Parabrachial nucleus lateral division central lateral partipsiPBLCL2
Medial parabrachial nucleus medial divisionipsiMPBM1
Gigantocellular reticular nucleusipsiGi2
Medial subnucleus reticularis ventralisipsiMSRV0.5
Parvicellular reticular nucleusipsiPCRt1
Vestibular systemipsiVES0
Nucleus of the solitary tract commissural partipsiSolC0.5
Nucleus of the solitary tract lateral partipsiSolL0.5
Nucleus of the solitary tract medial part caudal zoneipsiSolMc2
Nucleus of the solitary tract medial part rostral zoneipsiNTSm-r2
Dorsal motor nucleus of vagusipsi101
Dorsal raphe nucleusipsiDR2
Rostral linear nucleus of the rapheipsiRLi1
Central raphe nucleusipsiCRN0.5
Superior central raphe nucleus lateral partipsiCSl0
Superior central raphe nucleus medial partipsiCSm0
Raphe magnus nucleusipsiRMg0.5
Dorsal paragigantocellular nucleusipsiDPGi0.5
Lateral paragigantocellular nucleusipsiLPGi1
Inferior salivatory nucleusipsiIS0.5
Dorsal endopiriform nucleusipsiDEn0
Diagonal band of BrocaipsiDBB2
Medial septal nucleusipsiMS2
Substantia innominataipsiSI3
Lateral preoptic areaipsiLPO2
Medial preoptic areaipsiMPA4
Anterodorsal preoptic nucleusipsiADP0.5
Medial preoptic nucleus central partipsiMPOC0
Medial preoptic nucleus lateral partipsiMPOL0.5
Medial preoptic nucleus medial partipsiMPOM0.5
Median preoptic nucleusipsiMnPO1
Dorsal tenia tectaipsiDTT0.5
Ventral tenia tectaipsiVTT0.5
Ventral tuberomammillary nucleusipsiVTM0
Lateral hypothalamic area dorsal partipsiLHd3
Lateral hypothalamic area motor related anterior region dorsal zoneipsiLHAad1
Lateral hypothalamic area motor related anterior region intermediate zoneipsiLHAai1
Lateral hypothalamic area motor related anterior region ventral zoneipsiLHAav2
Lateral hypothalamic area motor related juxtadorsomedial regionipsiLHAjud3
Lateral hypothalamic area motor related juxtaparaventricular regionipsiLHAjp4
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd3
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv2
Lateral hypothalamic area parvicellular regionipsiLHApc0.5
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa1
Lateral hypothalamic area subfornical region posterior zoneipsiLHAsfpo1
Lateral hypothalamic area subfornical region premammillary zoneipsiLHAsfpm1
Lateral hypothalamic area suprafornical regionipsiLHAs1
Lateral hypothalamic area posterior partipsiLHAp2
Lateral hypothalamic area ventral part lateral zoneipsiLHAvl0.5
Lateral hypothalamic area ventral part medial zoneipsiLHAvm1
Magnocellular nucleus of the lateral hypothalamusipsiMCLH0.5
Lateral tuberal nucleusipsiLTUN0.5
Tuberal nucleus intermediate partipsiTUi1
Tuberal nucleus subventromedial partipsiTUsv2
Tuberal nucleus terete partipsiTUte0
Anterior hypothalamic areaipsiAHA2
Anterior hypothalamic area anterior partipsiAHAA2
Anterior hypothalamic area central partipsiAHAC4
Anterior hypothalamic area dorsal partipsiAHAd0.5
Anterior hypothalamic area posterior partipsiAHAP1
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe0.5
Anteroventral preoptic nucleusipsiAnV0.5
Dorsomedial hypothalamic nucleus anterior partipsiDMA1
Dorsomedial hypothalamic nucleus ventral partipsiDMV0.5
Dorsomedial nucleus posterior partipsiDMHp0.5
Parastriatal nucleusipsiPS0
Posterior hypothalamic nucleusipsiPH4
Subparaventricular zoneipsiSuPZ2
Ventromedial hypothalamic nucleus anterior partipsiVMHA0.5
Ventromedial hypothalamic nucleus central partipsiVMHC2
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM1
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL0.5
Anterior periventricular nucleusipsiPeA0
Arcuate nucleusipsiArc0
Intermediate periventricular nucleus of the hypothalamusipsiPVi0
Paraventricular hypothalamic nucleus descending divisionipsiPVHd0.5
Paraventricular hypothalamic nucleus descending division forniceal partipsiPVHf3
Paraventricular nucleus of the hypothalamus descending division lateral parvicellular partipsiPVHl3
Paraventricular nucleus of the hypothalamus descending division medial parvicellular part ventral zoneipsiPVHmd0
Paraventricular hypothalamic nucleus parvicellular division periventricular partipsiPaPP0.5
Paraventricular hypothalamic nucleus magnocellular division posterior part lateral zoneipsiPVHpml0.5
Paraventricular hypothalamic nucleus magnocellular division posterior part medial zoneipsiPVHpmm0.5
Paraventricular nucleus medial parvicellular part dorsal zoneipsiPVHmpdo2
Paraventricular hypothalamic nucleus anterior parvicellular subdivisionipsiaPavPo1
Periventricular hypothalamic nucleus intranuclear areaipsiPeiN1
Periventricular hypothalamic nucleus posterior partipsiPePOp0
Preoptic periventricular nucleusipsiPePO0
Suprachiasmatic nucleusipsiSCh0
Suprachiasmatic preoptic nucleusipsiPSCh0
Medial mammillary nucleus bodyipsiMMnB2
Medial mammillary nucleus median partipsiMMnm2
Premammillary nucleus dorsal partipsiPMD4
Premammillary nucleus ventral partipsiPMV0.5
Supramammillar nucleus lateral partipsiSuML1
Supramammillar nucleus medial partipsiSuMM2
Retrochiasmatic areaipsiRCh1
Anterodorsal thalamic nucleusipsiAD0
Anteromedial thalamic nucleus dorsal partipsiAMd0.5
Anteromedial thalamic nucleus ventral partipsiAMV0.5
Anteroventral thalamic nucleusipsiAV1
Interoanterodorsal thalamic nucleusipsiIAD0
Interoanteromedial thalamic nucleusipsiIAM0
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL0.5
Parafascicular thalamic nucleusipsiPF1
Rhomboid thalamic nucleusipsiRh1
Intermediodorsal thalamic nucleusipsiIMD2
Mediodorsal thalamic nucleus central partipsiMDC0.5
Mediodorsal thalamic nucleus lateral partipsiMDL1
Mediodorsal thalamic nucleus medial partipsiMDM1
Paratenial thalamic nucleusipsiPT2
Paraventricular thalamic nucleusipsiPV3
Perireuniens nucleusipsiPRe0
Nucleus reuniens caudal division caudal partipsiRECc2
Nucleus reuniens caudal division dorsal partipsiRECd0.5
Nucleus reuniens caudal division median partipsiREcm0.5
Nucleus reuniens rostral division anterior partipsiREa3
Nucleus reuniens rostral division dorsal partipsiRERd1
Nucleus reuniens rostral division lateral partipsiREl3
Nucleus reuniens rostral division median partipsiREme1
Nucleus reuniens rostral division ventral partipsiRERv3
Subfornical organipsiSFO0
Lateral posterior thalamic nucleusipsiLP0.5
Laterodorsal thalamic nucleusipsiLD0.5
Reticular thalamic nucleusipsiRt1
Subparafascicular thalamic nucleus magnocellular partipsiSPFm0.5
Subparafascicular thalamic nucleus parvicellular partipsiSPFp0
Subparafascicular thalamic nucleus parvicellular part lateral divisionipsiSPFpl0
Ventral medial nucleus of the thalamusipsiVMT0
Zona incertaipsiZI2
Lateral habenular nucleusipsiLHb3
Medial pretectal nucleusipsiMPT0.5
Posterior pretectal nucleusipsiPPT0
Anterior basolateral nucleusipsiBLA0.5
Posterior basolateral nucleusipsiBLP0
Anterior basomedial nucleusipsiBMA0.5
Posterior basomedial nucleusipsiBMP0.5
Lateral amygdaloid nucleusipsiLA0
Bed nucleus of the stria terminalis anterior division anterolateral nucleusipsiBSTal2
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm2
Bed nucleus of the stria terminalis anterior ventral areaipsiBSTAV1
Bed nucleus of the stria terminalis fusiform partipsiFu1
Bed nucleus of the stria terminalis magnocellular nucleusipsiBSTmc1
Bed nucleus of the stria terminalis anterior division anteromedial nucleusipsiBSTaam3
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd0
Bed nucleus of the stria terminalis interfascicular nucleusipsiBSTif2
Bed nucleus of the stria terminalis principal nucleusipsiBSTpr2
Bed nucleus of the stria terminalis transverse nucleusipsiBSTt1
Capsule like area surrounding central amygdaloid nucleusipsiCec0.5
Central amygdaloid nucleus lateral divisionipsiCeL0
Central amygdaloid nucleus medial divisionipsiCeM0.5
Anterior amygdaloid areaipsiAA0.5
Anterior cortical amygdaloid nucleusipsiACo0.5
Posterior amygdaloid nucleus medial partipsiCOApm1
Posterior amygdaloid nucleusipsiCOAp0
Posterolateral cortical nucleusipsiPLCo0.5
Nucleus of the lateral olfactory tractipsiLOT0.5
Medial amygdaloid nucleus anterodorsal partipsiMeAD2
Medial amygdaloid nucleus anteroventral partipsiMeAV0
Medial amygdaloid nucleus posterodorsal part sublayer aipsiMEApd-a1
Medial amygdaloid nucleus posterodorsal part sublayer bipsiMEApd-b0.5
Medial amygdaloid nucleus posterodorsal part sublayer cipsiMEApd-c0
Medial amygdaloid nucleus posteroventral partipsiMePV0.5
ClaustrumipsiCl0
Accumbens nucleus shellipsiAcbSh1
Parasubthalamic nucleusipsiPSTh0.5
Bed nucleus of the anterior commissureipsiBAC0.5
Field CA1 of hippocampus layer stratum pyramidale deepipsiCA1L3spd0.5
Field CA1 of hippocampus layer stratum pyramidale superficialipsiCA1L3sps0
Field CA1 of hippocampus layer stratum oriensipsiCA1or0
Field CA2 of hippocampusipsiCA20
Field CA2 of hippocampus layer stratum pyramidaleipsiCA2pyr0
Field CA3 of hippocampus layer stratum pyramidaleipsiCA3pyr0
Field CA3 of hippocampus layer stratum oriensipsiCA3or0
Subiculum layer 5ipsiSuL50
Septohippocampal nucleusipsiSHi0.5
PresubiculumipsiPrS0
ParasubiculumipsiPaS0
PostsubiculumipsiPost0
Lateral entorhinal cortex caudal partipsiLEntC0
Medial entorhinal cortex dorsal partipsiMEntD0
Piriform cortexipsiPir0.5
Postpiriform transition areaipsiTR0
Retrosplenial dorsalipsiRSd0
Retrosplenial ventral partipsiRSPv0
Dorsal anterior cingulate cortexipsiDACC0
Ventral anterior cingulate cortexipsiVACC0
Prelimbic cortexipsiPrL0
Infralimbic cortexipsiIL0
Auditory regionsipsiAU0
Agranular insular cortex dorsal partipsiAID0
Agranular insular cortex posterior partipsiAIP0
Agranular insular cortex ventral partipsiAIV0
Perirhinal cortexipsiA350
Ectorhinal cortexipsiA360
Medial agranular prefrontal cortexipsiAGm0
Sensory regionsipsiSR0
Visual regionsipsiVR0
Lateral orbital cortexipsiLO0
Medial orbital cortexipsiMO0
Ventral orbital cortexipsiVO0
Ventrolateral orbital areaipsiVLO0
Precommissural nucleusipsiPrC3
Interpeduncular nucleus dorsal subnucleusipsiIPRd0.5
Interpeduncular nucleus lateral subnucleus intermediate partipsiIPNLi0.5
Anterior olfactory nucleus posteroventral partipsiAONpv0
Olfactory tubercleipsiTuO0
Lateral septal nucleus caudal part dorsal zone dorsal regionipsiLScdd0.5
Lateral septal nucleus caudal part dorsal zone lateral regionipsiLScdl0
Lateral septal nucleus caudal part dorsal zone rostral regionipsiLScdr1
Lateral septal nucleus caudal part dorsal zone ventral regionipsiLScdv0.5
Lateral septal nucleus caudal part ventral zone intermediate regionipsiLScvi0.5
Lateral septal nucleus caudal part ventral zone lateral region dorsal domainipsiLScvld0.5
Lateral septal nucleus caudal part ventral zone lateral region ventral domainipsiLScvlv0.5
Lateral septal nucleus caudal part ventral zone medial region dorsal domainipsiLScvmd1
Lateral septal nucleus caudal part ventral zone medial region ventral domainipsiLScvmv0.5
Lateral septal nucleus rostral part dorsolateral zone lateral region dorsal domainipsiLSrdlld1
Lateral septal nucleus rostral part dorsolateral zone lateral region ventral domainipsiLSrdllv0.5
Lateral septal nucleus rostral part dorsolateral zone medial region dorsal domainipsiLSrdlmd3
Lateral septal nucleus rostral part dorsolateral zone medial region ventral domainipsiLSrdlmv1
Lateral septal nucleus rostral part medial zone dorsal regionipsiLSrmd3
Lateral septal nucleus rostral part medial zone ventral region caudal domainipsiLSrmvc0.5
Lateral septal nucleus rostral part medial zone ventral region rostral domainipsiLSrmvr2
Lateral septal nucleus rostral part ventrolateral zone dorsal region lateral domainipsiLSrvldl2
Lateral septal nucleus rostral part ventrolateral zone dorsal region medial domainipsiLSrvldm2
Lateral septal nucleus rostral part ventrolateral zone ventral regionipsiLSrvlv1
Lateral septal nucleus ventral partipsiLSV0
Septofimbrial nucleusipsiSFi2
Triangular septal nucleusipsiTS0.5

Input from

NameSideAbbr.WeightDetails
Central gray pons partipsiCGP2
Nucleus of DarkschewitschipsiDk0
Dorsolateral periaqueductal grayipsiDLPAG0.5
Periaqueductal gray dorsal partipsiPAGd0.5
Periaqueductal gray medial partipsiPAGm0.5
Periaqueductal gray rostrolateral partipsiPAGRL-0.5
Periaqueductal gray rostromedial divisionipsiPAGrm2
Ventrolateral periaqueductal grayipsiVLPAG3
Commissural nucleus of the inferior colliculusipsiCom1
Sublayer b of superior colliculus intermediate layersipsiSCiB1
Superior colliculus motor related intermediate gray layer sublayer aipsiSCig-a0
Superior colliculus motor related intermediate gray layer sublayer cipsiSCig-c0.5
Deep gray layer of the superior colliculusipsiDpG1
Peduncularpontine nucleusipsiPPN0.5
Ventral tegmental area A10ipsiVTA2
Interfascicular nucleusipsiIF0
Retrorubral nucleusipsiRR0.5
Lateral tegmental nucleusipsiLTN1
Laterodorsal tegmental nucleusipsiLDTg0.5
Ventral tegmental nucleusipsiVTg0
CerebellumipsiCERE0
Barringtons nucleusipsiBar0
Locus coeruleusipsiLC0
Nucleus incertus pars dissipataipsiNId0
Parapyramidal nucleus deep partipsiPPYd0
Precerebellar nucleiipsiPCN0
Magnocellular reticular nucleusipsiNRMC0
Preparasubthalamic nucleusipsiPST0
Midbrain reticular nucleus parvicellular partipsiMRNp0.5
Midbrain reticular nucleus magnocellular partipsiMRNm2
Pontine reticular nucleus oral partipsiPnO0
Pontine reticular nucleus caudal partipsiPNC0
Cuneiforme nucleusipsiCnF0.5
Lateral parabrachial nucleus dorsolateral partipsiLPBdL0.5
Lateral parabrachial nucleus external lateral partipsiLPBEL0.5
Lateral parabrachial nucleus superior lateral partipsiPBls0.5
Lateral parabrachial nucleus ventral partipsiLPBV2
Parabrachial nucleus lateral division central lateral partipsiPBLCL1
Medial parabrachial nucleus medial divisionipsiMPBM0.5
Gigantocellular reticular nucleusipsiGi0
Medial subnucleus reticularis ventralisipsiMSRV0
Parvicellular reticular nucleusipsiPCRt0
Vestibular systemipsiVES0
Nucleus of the solitary tract commissural partipsiSolC0
Nucleus of the solitary tract lateral partipsiSolL0
Nucleus of the solitary tract medial part caudal zoneipsiSolMc0.5
Nucleus of the solitary tract medial part rostral zoneipsiNTSm-r0
Dorsal motor nucleus of vagusipsi100
Dorsal raphe nucleusipsiDR0.5
Rostral linear nucleus of the rapheipsiRLi0.5
Central raphe nucleusipsiCRN0.5
Superior central raphe nucleus lateral partipsiCSl0
Superior central raphe nucleus medial partipsiCSm0.5
Raphe magnus nucleusipsiRMg0
Dorsal paragigantocellular nucleusipsiDPGi0
Lateral paragigantocellular nucleusipsiLPGi0
Inferior salivatory nucleusipsiIS0
Dorsal endopiriform nucleusipsiDEn0.5
Diagonal band of BrocaipsiDBB2
Medial septal nucleusipsiMS2
Substantia innominataipsiSI3
Lateral preoptic areaipsiLPO2
Medial preoptic areaipsiMPA4
Anterodorsal preoptic nucleusipsiADP0.5
Medial preoptic nucleus central partipsiMPOC0.5
Medial preoptic nucleus lateral partipsiMPOL1
Medial preoptic nucleus medial partipsiMPOM1
Median preoptic nucleusipsiMnPO3
Dorsal tenia tectaipsiDTT3
Ventral tenia tectaipsiVTT0.5
Ventral tuberomammillary nucleusipsiVTM0.5
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar0
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR0
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp1
Lateral hypothalamic area dorsal partipsiLHd2
Lateral hypothalamic area motor related anterior region dorsal zoneipsiLHAad2
Lateral hypothalamic area motor related anterior region intermediate zoneipsiLHAai2
Lateral hypothalamic area motor related anterior region ventral zoneipsiLHAav2
Lateral hypothalamic area motor related juxtadorsomedial regionipsiLHAjud1
Lateral hypothalamic area motor related juxtaparaventricular regionipsiLHAjp1
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm1.5
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0.5
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv2
Lateral hypothalamic area parvicellular regionipsiLHApc0.5
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa1
Lateral hypothalamic area subfornical region posterior zoneipsiLHAsfpo1
Lateral hypothalamic area subfornical region premammillary zoneipsiLHAsfpm0
Lateral hypothalamic area suprafornical regionipsiLHAs1
Lateral hypothalamic area posterior partipsiLHAp1
Lateral hypothalamic area ventral part lateral zoneipsiLHAvl0.5
Lateral hypothalamic area ventral part medial zoneipsiLHAvm1
Magnocellular nucleus of the lateral hypothalamusipsiMCLH0
Lateral tuberal nucleusipsiLTUN0
Tuberal nucleus intermediate partipsiTUi0.5
Tuberal nucleus subventromedial partipsiTUsv0.5
Tuberal nucleus terete partipsiTUte0.5
Anterior hypothalamic areaipsiAHA1
Anterior hypothalamic area anterior partipsiAHAA1
Anterior hypothalamic area central partipsiAHAC2
Anterior hypothalamic area dorsal partipsiAHAd0
Anterior hypothalamic area posterior partipsiAHAP0.5
Anterior hypothalamic nucleus ventromedial partipsiAHAvm1
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe1
Anteroventral preoptic nucleusipsiAnV2
Dorsomedial hypothalamic nucleus anterior partipsiDMA1
Dorsomedial hypothalamic nucleus ventral partipsiDMV1
Dorsomedial nucleus posterior partipsiDMHp2
Parastriatal nucleusipsiPS1
Posterior hypothalamic nucleusipsiPH4
Subparaventricular zoneipsiSuPZ0.5
Ventromedial hypothalamic nucleus anterior partipsiVMHA0.5
Ventromedial hypothalamic nucleus central partipsiVMHC2
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM3
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL2
Anterior periventricular nucleusipsiPeA0.5
Arcuate nucleusipsiArc1
Intermediate periventricular nucleus of the hypothalamusipsiPVi0.5
Paraventricular hypothalamic nucleus descending divisionipsiPVHd0.5
Paraventricular hypothalamic nucleus descending division forniceal partipsiPVHf0
Paraventricular nucleus of the hypothalamus descending division lateral parvicellular partipsiPVHl1
Paraventricular nucleus of the hypothalamus descending division medial parvicellular part ventral zoneipsiPVHmd0.5
Paraventricular hypothalamic nucleus parvicellular division periventricular partipsiPaPP0.5
Paraventricular hypothalamic nucleus magnocellular division posterior part lateral zoneipsiPVHpml0
Paraventricular hypothalamic nucleus magnocellular division posterior part medial zoneipsiPVHpmm0
Paraventricular nucleus medial parvicellular part dorsal zoneipsiPVHmpdo0.5
Paraventricular hypothalamic nucleus anterior parvicellular subdivisionipsiaPavPo2
Periventricular hypothalamic nucleus intranuclear areaipsiPeiN2
Periventricular hypothalamic nucleus posterior partipsiPePOp1
Preoptic periventricular nucleusipsiPePO0.5
Subparaventricular zone of the hypothalamus perisuprachiasmatic regionipsiSBPVps1
Suprachiasmatic nucleusipsiSCh0
Suprachiasmatic nucleus dorsomedial partipsiSCnDM-3
Suprachiasmatic nucleus ventrolateral partipsiSCnVL-3
Suprachiasmatic preoptic nucleusipsiPSCh0.5
Medial mammillary nucleus bodyipsiMMnB0.5
Medial mammillary nucleus median partipsiMMnm0.5
Premammillary nucleus dorsal partipsiPMD2
Premammillary nucleus ventral partipsiPMV0.5
Supramammillar nucleus lateral partipsiSuML1
Supramammillar nucleus medial partipsiSuMM1
Retrochiasmatic areaipsiRCh1
Anterodorsal thalamic nucleusipsiAD0
Anteromedial thalamic nucleus dorsal partipsiAMd0
Anteromedial thalamic nucleus ventral partipsiAMV0
Anteroventral thalamic nucleusipsiAV0.5
Interoanterodorsal thalamic nucleusipsiIAD0
Interoanteromedial thalamic nucleusipsiIAM0
Central medial thalamic nucleusipsiCM0
Centrolateral thalamic nucleusipsiCL0
Parafascicular thalamic nucleusipsiPF0
Rhomboid thalamic nucleusipsiRh0
Intermediodorsal thalamic nucleusipsiIMD0.5
Mediodorsal thalamic nucleus central partipsiMDC0
Mediodorsal thalamic nucleus lateral partipsiMDL0
Mediodorsal thalamic nucleus medial partipsiMDM0
Paratenial thalamic nucleusipsiPT0.5
Paraventricular thalamic nucleusipsiPV1
Perireuniens nucleusipsiPRe0
Nucleus reuniens caudal division caudal partipsiRECc0.5
Nucleus reuniens caudal division dorsal partipsiRECd0
Nucleus reuniens caudal division median partipsiREcm0
Nucleus reuniens rostral division anterior partipsiREa0
Nucleus reuniens rostral division dorsal partipsiRERd0
Nucleus reuniens rostral division lateral partipsiREl0
Nucleus reuniens rostral division median partipsiREme0
Nucleus reuniens rostral division ventral partipsiRERv0
Subfornical organipsiSFO1
Lateral posterior thalamic nucleusipsiLP0
Laterodorsal thalamic nucleusipsiLD0
Reticular thalamic nucleusipsiRt0
Subparafascicular thalamic nucleus magnocellular partipsiSPFm0
Subparafascicular thalamic nucleus parvicellular partipsiSPFp0.5
Subparafascicular thalamic nucleus parvicellular part lateral divisionipsiSPFpl0.5
Ventral medial nucleus of the thalamusipsiVMT0.5
Zona incertaipsiZI1
Lateral habenular nucleusipsiLHb0.5
Medial pretectal nucleusipsiMPT0.5
Posterior pretectal nucleusipsiPPT0
Anterior basolateral nucleusipsiBLA0.5
Posterior basolateral nucleusipsiBLP0.5
Anterior basomedial nucleusipsiBMA1
Posterior basomedial nucleusipsiBMP0.5
Lateral amygdaloid nucleusipsiLA0.5
Bed nucleus of the stria terminalis anterior division anterolateral nucleusipsiBSTal2
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm1
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM3
Bed nucleus of the stria terminalis anterior ventral areaipsiBSTAV0.5
Bed nucleus of the stria terminalis fusiform partipsiFu2
Bed nucleus of the stria terminalis magnocellular nucleusipsiBSTmc0.5
Bed nucleus of the stria terminalis anterior division anteromedial nucleusipsiBSTaam4
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd0
Bed nucleus of the stria terminalis interfascicular nucleusipsiBSTif2
Bed nucleus of the stria terminalis principal nucleusipsiBSTpr1
Bed nucleus of the stria terminalis transverse nucleusipsiBSTt0.5
Capsule like area surrounding central amygdaloid nucleusipsiCec0.5
Central amygdaloid nucleus lateral divisionipsiCeL2
Central amygdaloid nucleus medial divisionipsiCeM0.5
Anterior amygdaloid areaipsiAA0.5
Anterior cortical amygdaloid nucleusipsiACo1
Posterior amygdaloid nucleus medial partipsiCOApm0
Posterior amygdaloid nucleusipsiCOAp0
Posterolateral cortical nucleusipsiPLCo1
Nucleus of the lateral olfactory tractipsiLOT1
Medial amygdaloid nucleus anterodorsal partipsiMeAD2
Medial amygdaloid nucleus anteroventral partipsiMeAV0.5
Medial amygdaloid nucleus posterodorsal part sublayer aipsiMEApd-a0.5
Medial amygdaloid nucleus posterodorsal part sublayer bipsiMEApd-b0.5
Medial amygdaloid nucleus posterodorsal part sublayer cipsiMEApd-c0.5
Medial amygdaloid nucleus posteroventral partipsiMePV0.5
ClaustrumipsiCl1
Accumbens nucleus shellipsiAcbSh0.5
Parasubthalamic nucleusipsiPSTh0
Bed nucleus of the anterior commissureipsiBAC0
Field CA1 of hippocampus layer stratum pyramidale deepipsiCA1L3spd1
Field CA1 of hippocampus layer stratum pyramidale superficialipsiCA1L3sps1
Field CA1 of hippocampus layer stratum oriensipsiCA1or0
Field CA1 of hippocampus ventral poleipsiCA1vp2
Field CA2 of hippocampusipsiCA20
Field CA2 of hippocampus layer stratum pyramidaleipsiCA2pyr0
Field CA3 of hippocampus layer stratum pyramidaleipsiCA3pyr0
Field CA3 of hippocampus layer stratum oriensipsiCA3or0
Subiculum layer 5ipsiSuL54
Septohippocampal nucleusipsiSHi1
PresubiculumipsiPrS0.5
ParasubiculumipsiPaS0.5
PostsubiculumipsiPost0.5
Lateral entorhinal cortex caudal partipsiLEntC0.5
Medial entorhinal cortex dorsal partipsiMEntD0.5
Piriform cortexipsiPir0.5
Postpiriform transition areaipsiTR0.5
Retrosplenial dorsalipsiRSd0.5
Retrosplenial ventral partipsiRSPv0
Dorsal anterior cingulate cortexipsiDACC0.5
Ventral anterior cingulate cortexipsiVACC0.5
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL3
Auditory regionsipsiAU0
Agranular insular cortex dorsal partipsiAID2
Agranular insular cortex posterior partipsiAIP1
Agranular insular cortex ventral partipsiAIV0.5
Perirhinal cortexipsiA350.5
Ectorhinal cortexipsiA360.5
Medial agranular prefrontal cortexipsiAGm0.5
Sensory regionsipsiSR0
Visual regionsipsiVR0
Lateral orbital cortexipsiLO0.5
Medial orbital cortexipsiMO0.5
Ventral orbital cortexipsiVO0.5
Ventrolateral orbital areaipsiVLO0.5
Precommissural nucleusipsiPrC2
Interpeduncular nucleus dorsal subnucleusipsiIPRd0.5
Interpeduncular nucleus lateral subnucleus intermediate partipsiIPNLi0
Anterior olfactory nucleus posteroventral partipsiAONpv0
Olfactory tubercleipsiTuO0
Lateral septal nucleus caudal part dorsal zone dorsal regionipsiLScdd1
Lateral septal nucleus caudal part dorsal zone lateral regionipsiLScdl0.5
Lateral septal nucleus caudal part dorsal zone rostral regionipsiLScdr2
Lateral septal nucleus caudal part dorsal zone ventral regionipsiLScdv1
Lateral septal nucleus caudal part ventral zone intermediate regionipsiLScvi1
Lateral septal nucleus caudal part ventral zone lateral region dorsal domainipsiLScvld2
Lateral septal nucleus caudal part ventral zone lateral region ventral domainipsiLScvlv0.5
Lateral septal nucleus caudal part ventral zone medial region dorsal domainipsiLScvmd1
Lateral septal nucleus caudal part ventral zone medial region ventral domainipsiLScvmv0.5
Lateral septal nucleus rostral part dorsolateral zone lateral region dorsal domainipsiLSrdlld3
Lateral septal nucleus rostral part dorsolateral zone lateral region ventral domainipsiLSrdllv0.5
Lateral septal nucleus rostral part dorsolateral zone medial region dorsal domainipsiLSrdlmd3
Lateral septal nucleus rostral part dorsolateral zone medial region ventral domainipsiLSrdlmv1
Lateral septal nucleus rostral part medial zone dorsal regionipsiLSrmd3
Lateral septal nucleus rostral part medial zone ventral region caudal domainipsiLSrmvc0.5
Lateral septal nucleus rostral part medial zone ventral region rostral domainipsiLSrmvr1
Lateral septal nucleus rostral part ventrolateral zone dorsal region lateral domainipsiLSrvldl3
Lateral septal nucleus rostral part ventrolateral zone dorsal region medial domainipsiLSrvldm3
Lateral septal nucleus rostral part ventrolateral zone ventral regionipsiLSrvlv0.5
Lateral septal nucleus ventral partipsiLSV0
Septofimbrial nucleusipsiSFi2
Triangular septal nucleusipsiTS0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications