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Rat connectome



Deep gray layer of the superior colliculus right


Abbreviation
DpG
Color       
Superior regionsSuperior colliculus deep layers

SynonymsAbbr.Language
Lamina VI of the superior colliculus  
Lamina 6 of the superior colliculus  
Layer 6 of the superior colliculus  
Stratum griseum profundumSGP 
Superior colliculus deep grey layerSCdgEng
Superior colliculus motor related deep gray layerSCdgEng
Deep gray layer of the superior colliculusDpGEng
Deep gray  

SubregionsSide
Deep gray layer of the anterior superior colliculusright
Deep gray layer of the anteriorposterior superior colliculusright
Deep gray layer of the extreme anterior pole of the superior colliculusright
Deep gray layer of the lateral superior colliculusright
Deep gray layer of the posterolateral superior colliculusright
Medial part of deep gray layer of the superior colliculusright
Rostral two-thirds of the stratum griseum profundum of the superior colliculusright
Deep gray layer of the superior colliculus rostral partright
Lateral portion of the deep gray layer of the superior colliculusright
Deep gray layer of the superior colliculus central partright
Deep gray layer of the posterior superior colliculusright
Rostral stratum griseum profundum of the superior colliculusright
Caudolateral stratum griseum profundum of the superior colliculusright
Middle third of the deep gray layer of the superior colliculusright
Deep gray layer of the superior colliculus rostrolateral partright

Output to

NameSideAbbr.WeightDetails
Interstitial nucleus of CajalcontraInC1
Reticular systemcontraRF-0.5
Mesencephalic reticular formationcontraMRF1
Pontine reticular nucleus paramedian partcontraPRNpm1
Parvicellular reticular nucleuscontraPCRt3
Facial nucleus intermediate partcontra7i2
Facial nucleus lateral subnucleuscontra7L1
Facial nucleus medial partcontra7M0.5
Facial nucleus dorsal intermediate subnucleuscontra7DI2
Principal sensory trigeminal nucleus ventral partcontraPr5v1
Spinal trigeminal nucleuscontraSp5nc-0.5
Paragigantocellular reticular nucleuscontraPGi-0.5
Predorsal bundlecontrapd-0.5
Rostral ventral respiratory groupcontraRVRG0.5
Submedius thalamic nucleuscontraSub1
Zona incertacontraZI0
Cervical segment 1contraCS1-0.5
Cervical segment 2contraCS2-0.5
Cervical segment 3contraCS3-0.5
Periaqueductal gray rostral partipsiPAGR3
Superior colliculusipsiSC1
Superior colliculus intermediate and deep layersipsiSCidLa-0.5
Peripeduncular areaipsiPPA4
Peripeduncular nucleusipsiPP2
Interstitial nucleus of CajalipsiInC2
Reticular systemipsiRF-0.5
Mesencephalic reticular formationipsiMRF2
Deep mesencephalic nucleusipsiDpMe3
Pontine reticular nucleus paramedian partipsiPRNpm0.5
Parvicellular reticular nucleusipsiPCRt1
Facial nucleusipsi72
Facial nucleus intermediate partipsi7i1
Facial nucleus lateral subnucleusipsi7L0.5
Facial nucleus medial partipsi7M1
Facial nucleus dorsal intermediate subnucleusipsi7DI1
Cochlear nucleusipsiCON-0.5
Olivary nucleusipsiON1
Paragigantocellular reticular nucleusipsiPGi3
Rostral ventral respiratory groupipsiRVRG0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0.5
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area juxtadorsomedial regionipsiJDM1
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Lateral hypothalamic area [Lateral zone tuberal level]ipsiLHtu0.5
Medial division of the hypothalamusipsiMdH1
Suprachiasmatic nucleusipsiSCh2
Dorsal part of the lateral geniculate complexipsiLGd1
Ventral part of the lateral geniculate complexipsiLGv1
Posterior thalamic nuclear groupipsiPo1
Suprageniculate thalamic nucleusipsiSG2
Mediodorsal thalamic nucleusipsiMD-0.5
Submedius thalamic nucleusipsiSub2
Posterior intralaminar thalamic nucleusipsiPIL2
Lateral posterior thalamic nucleusipsiLP2
Laterodorsal thalamic nucleusipsiLD2
Zona incertaipsiZI2
Subthalamic nucleusipsiSTh2
Medial geniculate nucleusipsiMG2
Medial geniculate nucleus medial partipsiMGM2
Prebrachial segmentsipsiPSeg3
Cervical segment 1ipsiCS1-0.5
Cervical segment 2ipsiCS2-0.5
Cervical segment 3ipsiCS3-0.5

Input from

NameSideAbbr.WeightDetails
Superior colliculuscontraSC1
Sublayer b of superior colliculus intermediate layerscontraSCiB1
Substantia nigra reticular partcontraSNR0.5
Posterior interposed nucleuscontraCERpin3
Medial cerebellar nucleuscontraMed3
Principal sensory trigeminal nucleuscontraPr53
Spinal trigeminal nucleuscontraSp5nc3
Spinal trigeminal nucleus interpolar partcontraSp5I3
Trigeminal subnucleus caudaliscontra5SSC3
Cuneate nucleuscontraCu-0.5
Gracile nucleus principal partcontraGr-0.5
Rostral ventral respiratory groupcontraRVRG1
Retrosplenial agranular cortex layer 4contraRSAL4-0.5
Retrosplenial agranular cortex layer 5contraRSAL5-0.5
Retrosplenial agranular cortex layer 6contraRSAL6-0.5
Retrosplenial agranular cortex layer 1contraRSAL1-0.5
Retrosplenial agranular cortex layer 2contraRSAL2-0.5
Retrosplenial agranular cortex layer 3contraRSAL3-0.5
Retrosplenial granular cortex layer 5contraRSGL5-0.5
Retrosplenial granular cortex layer 6contraRSGL6-0.5
Retrosplenial granular cortex layer 1contraRSGL1-0.5
Retrosplenial granular cortex layer 2contraRSGL2-0.5
Retrosplenial granular cortex layer 3contraRSGL3-0.5
Retrosplenial granular cortex layer 4contraRSGL4-0.5
White matter of the retrosplenial granular cortexcontraRSGraWM-0.5
Whisker motor cortex A1contraWMCxA11
Lateral cervical nucleuscontraLatC1
Spinal cord layer 3 C2contraSCL3C21
Spinal cord layer 4 C2contraSCL4C21
Spinal cord layer 1 C2contraSCL1C21
Spinal cord layer 2 C2contraSCL2C21
Brachium of the inferior colliculusipsibic3
Superior colliculusipsiSC2
Intermediate gray layer of the superior colliculusipsiInG2
Substantia nigra reticular partipsiSNR0.5
Substantia nigra reticular part ventral subdivisionipsiSNRv0.5
Posterior interposed nucleusipsiCERpin0
Medial cerebellar nucleusipsiMed0
Principal sensory trigeminal nucleusipsiPr53
Rostral ventral respiratory groupipsiRVRG1
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area juxtadorsomedial regionipsiJDM2
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd2
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Lateral hypothalamic area posterior partipsiLHAp1
Perifornical nucleusipsiPeF1
Posterior thalamic nuclear groupipsiPo-0.5
Suprageniculate thalamic nucleusipsiSG3
Posterior intralaminar thalamic nucleusipsiPIL3
Lateral posterior thalamic nucleus caudal partipsiLPca-0.5
Zona incertaipsiZI3
RetinaipsiRET-0.5
Retrosplenial cortex anterior partipsiRSan3
Retrosplenial cortex posterior partipsiRSpo1
Retrosplenial agranular cortex layer 4ipsiRSAL43
Retrosplenial agranular cortex layer 5ipsiRSAL53
Retrosplenial agranular cortex layer 6ipsiRSAL63
Retrosplenial agranular cortex layer 1ipsiRSAL13
Retrosplenial agranular cortex layer 2ipsiRSAL23
Retrosplenial agranular cortex layer 3ipsiRSAL33
Retrosplenial granular cortex layer 5ipsiRSGL53
Retrosplenial granular cortex layer 6ipsiRSGL63
Retrosplenial granular cortex layer 1ipsiRSGL13
Retrosplenial granular cortex layer 2ipsiRSGL23
Retrosplenial granular cortex layer 3ipsiRSGL33
Retrosplenial granular cortex layer 4ipsiRSGL43
White matter of the retrosplenial granular cortexipsiRSGraWM3
Prelimbic cortex ventral partipsiPrLv1
Frontal association cortex dorsolateralipsiFrADL1
Parietal cortex area 1ipsiPar1-0.5
Rostral dorsomedial frontal cortexipsiPFCdmr3
Lateral agranular prefrontal cortexipsiAGl-0.5
Whisker motor cortex subfieldsipsiWMCxS-0.5
Whisker motor cortex A1ipsiWMCxA10.5
Medial prefrontal cortexipsimPFC1
Medial agranular prefrontal cortex rostral partipsirAGm1
Primary somatosensory cortexipsiS1-0.5
Primary somatosensory cortex forelimb regionipsiS1FL-0.5
Primary somatosensory cortex hindlimb regionipsiS1HL-0.5
Secondary visual cortex lateral areaipsiV2L2
Ventral lateral geniculate nucleusipsiVLG-0.5
Marginal zone of the medial geniculateipsiMZMG1
Medial geniculate nucleus dorsal partipsiMGD0.5
Medial geniculate nucleus medial partipsiMGM3
Spinal cord layer 4 C2ipsiSCL4C21
Spinal cord layer 1 C2ipsiSCL1C21
Spinal cord layer 2 C2ipsiSCL2C21

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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