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Rat connectome



Primary somatosensory cortex layer 6 right


Abbreviation
S1L6
Color       
Superior regionsPrimary somatosensory cortex infragranular layers

SynonymsAbbr.Language
Primary somatosensory cortex layer 6S1L6 

SubregionsSide
Primary somatosensory cortex layer 6aright
Primary somatosensory cortex layer 6bright

Output to

NameSideAbbr.WeightDetails
Ventro anterior thalamic nucleuscontraVA0.5
Medial striatumcontraCPum1
Lateral striatumcontraCPul1
Frontal association cortexcontraFrA1
Frontal cortex area 3contraFr31
Lateral parietal association cortexcontraLPtA1.5
Primary somatosensory cortexcontraS13
Primary somatosensory cortex layer 5contraS1L5-0.5
Primary somatosensory cortex layer 6contraS1L61
Primary somatosensory cortex forelimb region forepawcontraS1FP3
Primary somatosensory cortex forelimb wrist region layer 5bcontraS1FLWL5b3
Primary somatosensory cortex periangular zone arround barrel fieldscontraS1pg3
Secondary somatosensory cortexcontraS23
Arcuate nucleusipsiArc-0.5
Dorsal thalamusipsiDOR-0.5
Anterior group of the dorsal thalamusipsiATN3
Parafascicular thalamic nucleusipsiPF3
Posterior thalamic nuclear groupipsiPo-0.5
Posterior thalamic nuclear group dorsal partipsiPoDo3
Mediodorsal thalamic nucleus central partipsiMDC3
Mediodorsal thalamic nucleus lateral partipsiMDL1
Ventrolateral thalamic nucleusipsiVL3
Ventrobasal complexipsiVB3
External nucleus of ventrobasal complexipsiEVB-0.5
Dorsomedial zone of the ventral posterolateral thalamic nucleusipsiVPLdmz-0.5
Ventral posteromedial thalamic nucleusipsiVPM2
Ventral part of the ventral posteromedial thalamic nucleusipsiVPMvL-0.5
Ventrobasal complex posterior partipsiVBp3
Main thalamic relay nucleiipsiVBMTRN-0.5
Intralaminar nucleiipsiILN-0.5
Lateral posterior thalamic nucleusipsiLP3
Reticular thalamic nucleusipsiRt-0.5
Ventral medial nucleus of the thalamusipsiVMT-0.5
Zona incertaipsiZI-0.5
Corpus callosumipsicc-0.5
Caudate putamenipsiCPu2
Medial striatumipsiCPum1
Central striatumipsiCPuce2
Dorsal striatumipsiCPud2
Dorsolateral striatumipsiCPudl2
Striatal matrix compartmentipsiSMC0
Striatal patch compartmentipsiSPC0
Lateral striatumipsiCPul1
Frontal association cortexipsiFrA1
Frontal cortex area 3ipsiFr31
Motoric regionsipsiM-0.5
Forelimb motor cortexipsiFMCx2.5
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortex layer 1ipsiS1L10
Secondary somatosensory cortexipsiS2-0.5
Lateral geniculate complexipsiLG3
Medial geniculate nucleusipsiMG3

Input from

NameSideAbbr.WeightDetails
Frontal association cortexcontraFrA3
Frontal cortex area 2contraFr23
Frontal cortex area 3contraFr33
Lateral parietal association cortexcontraLPtA1.5
Whiskers motor cortex layer 5contraWMCxL53
Whiskers motor cortex layer 6contraWMCxL63
Primary somatosensory cortexcontraS12
Primary somatosensory cortex layer 6contraS1L61
Gigantocellular reticular nucleusipsiGi2
Central medial thalamic nucleusipsiCM-0.5
Centre median nucleusipsiCeMe1.5
Centrolateral thalamic nucleusipsiCL1
Paracentral thalamic nucleusipsiPC3
Parafascicular thalamic nucleusipsiPF1.5
Dorsal division of the lateral parafascicular thalamic nucleusipsiPFDL1
Parafascicular thalamic nucleus ventrolateral partipsiPFvl2
Rhomboid thalamic nucleusipsiRh2
Ventrobasal complexipsiVB1
Ventral posteromedial thalamic nucleusipsiVPM3
Dorsomedial portion of the ventral posteromedial thalamic nucleusipsiVPMdm2
Ventral posterolateral thalamic nucleus parvicellular partipsiVPLpc-0.5
Intralaminar nucleiipsiILN-0.5
Frontal association cortexipsiFrA3
Frontal cortex area 2ipsiFr22
Frontal cortex area 3ipsiFr33
Border of frontal cortex 2ipsiFr2B3
Dysgranular insular cortexipsiDI-0.5
Gustatory dysgranular insular cortex layer 5ipsiDIgL52
Gustatory dysgranular insular cortex layer 6ipsiDIgL62
Whiskers motor cortex layer 5ipsiWMCxL53
Whiskers motor cortex layer 6ipsiWMCxL63
Anterolateral area of subdivision 18a in lateral extrastriate cortexipsiALV2L-0.5
Lateromedial area of subdivision 18a in lateral extrastriate cortexipsiLMV2L-0.5
Anterior portion of the anterolateral part of the lateral extrastriate cortexipsiVISLaLA3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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