University of Rostock

Department of Anatomy

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Rat connectome



Central raphe nucleus left


Abbreviation
CRN
Color       
Superior regionsMedian raphe nucleus

SynonymsAbbr.Language
 Cli 
Central raphe nucleusCRNEng
Central linear nucleus of the raphe Eng
Central linear nucleus rapheCLIEng
Central linear nucleus  
Central linear nucleus of raphe  

SubregionsSide
Central raphe nucleus dorsal partleft
Central raphe nucleus lateral partleft
Central raphe nucleus ventral partleft
Central raphe nucleus caudal partleft

Output to

NameSideAbbr.WeightDetails
Substantia nigra caudal partipsiSNcp-0.5
Lateral parabrachial nucleusipsiLPB-0.5
Dorsal raphe nucleusipsiDR1
Diagonal band of BrocaipsiDBB2
Substantia innominataipsiSI1
Medial preoptic areaipsiMPA1
Ventrolateral preoptic nucleusipsiVLPO1
Ventromedial preoptic nucleusipsiVMPO-0.5
Posterior region [Lateral division of the hypothalamus]ipsiPReg-1
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0.5
Tuberal nucleusipsiTU-1
Anterior hypothalamic areaipsiAHA-1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Reuniens thalamic nucleusipsiRe-0.5
Reuniens thalamic nucleus caudomedial divisionipsiRecm1
Reunienes thalamic nucleus rostromedial divisionipsiRerm2
Reuniens thalamic nucleus rostrolateral divisionipsiRerl1
Dorsal bank of the anterior portion of the rhinal fissureipsidarf1
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV1
Central amygdaloid nucleus medial divisionipsiCeM1
Accumbens nucleusipsiAc-0.5
Lateral nucleus accumbensipsiAcl2
Medial accumbensipsiAcbM2
Glia limitans layeripsigliaLim3
White matter of the neocortexipsiWMNCx-2
Most ventral part of the pregenual part of the anteromedial cortexipsiFr2mvpg1
Frontal polar cortexipsiFP1
Granular insular cortexipsiGI1
Prefrontal cortexipsiPFC3
Prefrontal cortex supragenual partipsisgPFC1
Dorsal part of the pregenual sector of the prefrontal cortexipsidpgPFC1
Medial prefrontal cortex posterior partipsimPFCp1
Dorsal portion of the lateral geniculate complexipsiLGD1
Interpeduncular nucleusipsiIP2.5
Olfactory bulb A16ipsiMOB2
Glomerular layer of the olfactory bulbipsiOBglo-0.5
Granular cell layer of the olfactory bulbipsiOBgra-0.5
Internal granular cell layer of the olfactory bulbipsiOBigra2
External granular cell layer of the olfactory bulbipsiOBegra2
Supraependymal terminals of 3d ventricleipsiset3V3
Subependymal terminals under the ependyma of the 3d ventricleipsisete3V3
4th ventricleipsi4V3
AqueductipsiAq3
Substantia nigra caudal partcontraSNcp1
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-0.5
Dorsal portion of the lateral geniculate complexcontraLGD-0.5

Input from

NameSideAbbr.WeightDetails
Ventral tegmental area A10ipsiVTA1
A5 noradrenaline cellsipsiA51
A7 noradrenaline cellsipsiA70.5
Locus coeruleusipsiLC1
Prelocus coeruleus nucleusipsiPLC3
Lateral parabrachial nucleus external part inner portionipsiLPBEip0.5
Dorsal lateral parabrachial nucleusipsiPBDoL1
Parabrachial nucleus medialipsiPBnMe3
Parabrachial nucleus waist partipsiPBW3
C1 adrenaline cellsipsiC10.5
C2 adrenaline cellsipsiC20.5
C3 adrenaline cellsipsiC30.5
Mesencephalic trigeminal nucleusipsiMe53
Dorsal raphe nucleus rostral partipsiDRr3
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA22
Substantia innominataipsiSI3
Lateral preoptic areaipsiLPO3
Medial preoptic areaipsiMPA1
Medial preoptic area dorsolateral partipsiMPADL2
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0.5
Tuberal nucleusipsiTU2
Posterior hypothalamic nucleus caudal partipsiPHCa1
Posterior hypothalamic nucleus rostral partipsiPHRo1
Ventromedial hypothalamic nucleus anterior partipsiVMHA1
Ventromedial hypothalamic nucleus central partipsiVMHC1
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM1
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL1
Arcuate nucleusipsiArc2
Premammillary nucleus dorsal partipsiPMD1
Supramammillar nucleus lateral part lateral subpartipsiSuMLL0
Supramammillar nucleus lateral part medial subpartipsiSuMLM0
Supramammillar nucleus medial partipsiSuMM0
Midbrain periventricular fiber systemipsilftmpe1
Anterior basomedial nucleusipsiBMA1
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM-0.5
Bed nucleus of the stria terminalis ventral tipipsiBNSTvt2
Medial amygdaloid nucleus anterodorsal partipsiMeAD1
Medial amygdaloid nucleus posteroventral partipsiMePV1
Subpallidal regionipsiSuPa-0.5
Medial orbital cortexipsiMO0
Ventral orbital cortexipsiVO0
Precommissural nucleusipsiPrC1
Olfactory bulb A16ipsiMOB-0.5
A5 noradrenaline cellscontraA51
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC0.5
C1 adrenaline cellscontraC10.5
C2 adrenaline cellscontraC20.5
C3 adrenaline cellscontraC30.5
A1 noradrenergic cellscontraA11
A2 noradrenergic cellscontraA22
Tuberal nucleuscontraTU1
Posterior hypothalamic nucleus caudal partcontraPHCa0.5
Posterior hypothalamic nucleus rostral partcontraPHRo0.5
Ventromedial hypothalamic nucleus anterior partcontraVMHA0.5
Ventromedial hypothalamic nucleus central partcontraVMHC0.5
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM1
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL0.5
Premammillary nucleus dorsal partcontraPMD0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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