University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Intermediate hypothalamic cell groups left


Abbreviation
IHCG
Color       
Superior regionsPreoptic region

SynonymsAbbr.Language
Intermediate hypothalamic cell groupsIHCGEng
Intermediate hypothalamic areaIHCGEng

SubregionsSide
Uncinate nucleusleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG3
Center of the dorsal central grayipsiCGCD3
Central gray dorsal peripheral partipsiCGDp1
Central gray dorsomedialipsiCGDM0.5
Central gray lateral dorsal peripheral partipsiCGLDp2
Central gray lateral dorsal central partipsiCGLDc2.5
Central gray lateral ventral partipsiCGVD1
Central gray lateral ventral peripheral partipsiCGVDp0
Central gray lateral ventral central partipsiCGVDc0.5
Central gray pons partipsiCGP1
Central gray dorsolateral peripheral partipsiCGDLp0
Central gray dorsolateral central partipsiCGDLc0
Central gray periventricular partipsiCGpv1
Central tegmental fieldipsiTGAC2
Ventral tegmental area A10ipsiVTA1
Ventrolateral tegmental areaipsiVLTg1
Pedunculopontine tegmental nucleusipsiPPTg1
A5 noradrenaline cellsipsiA50.5
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC1
Cuneiforme nucleusipsiCnF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Nucleus of the solitary tractipsiSol0.5
Dorsal raphe nucleusipsiDR1.5
Median raphe nucleusipsiMnR2
Raphe magnus nucleusipsiRMg1
Ventral lateral medulla oblongataipsiMVL0.5
Median eminenceipsiME0
Diagonal band of BrocaipsiDBB1.5
Medial septal nucleusipsiMS2
Substantia innominata pars subcommissuralisipsiSIsc2
Substantia innominata sublenticular partipsiSIS2
Lateral preoptic areaipsiLPO3
Medial preoptic areaipsiMPA2.5
Dorsomedial hypothalamic nucleusipsiDMHy1
Lateral zoneipsiLHA1
Ventromedial hypothalamic nucleusipsiVMH2
Arcuate nucleusipsiArc1
Arcuate nucleus middle partipsiArcMi-0.5
Paraventricular hypothalamic nucleus magnocellular part [Periventricular zone anterior region]ipsiPaAM0
Paraventricular hypothalamic nucleus parvicellular part [Periventricular zone anterior region]ipsiPaPc1
Paraventricular hypothalamic nucleus medial parvocellular part dorsal partipsiMPPap2
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP2
Paraventricular hypothalamic nucleus perifornical partipsiPaPARpe2
Paraventricular hypothalamic nucleus subparaventricular zoneipsiSPZ2
Paraventricular hypothalamic nucleusipsiPa3
Paraventricular hypothalamic nucleus perinuclear zoneipsiPapnz4
Premammillary nucleus dorsal partipsiPMD3
Premammillary nucleus ventral partipsiPMV1
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL0
Rhomboid thalamic nucleusipsiRh2
Mediodorsal thalamic nucleusipsiMD3
Paratenial thalamic nucleusipsiPT2.5
Paraventricular thalamic nucleusipsiPV2.5
Reuniens thalamic nucleusipsiRe2
Zona incertaipsiZI1
Lateral habenular nucleusipsiLHb2
Stria medullaris of the thalamusipsism1.5
Amygdaloid complexipsiAC1.5
Lateral amygdaloid nucleusipsiLA0.5
Bed nucleus of the stria terminalisipsiBST3
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA2.5
Central amygdaloid nucleusipsiCe1
Medial amygdaloid nucleusipsiMe1.5
Amygdalohippocampal areaipsiAHi1.5
Field CA1 of hippocampusipsiCA11.5
Precommissural nucleusipsiPrC2.5
Lateral septal nucleus dorsal partipsiLSD1
Lateral septal nucleus intermediate partipsiLSI3
Lateral septal nucleus intermediate part ventral subdivisionipsiLSVIV2.5
Dorsolateral subdivision of the lateral septal nucleus intermediate partipsiLSIDL3
Dorsomedial subdivision of the lateral septal nucleus intermediate partipsiLSIDM1
Lateral subdivision of the lateral septal nucleus intermediate partipsiLSIL3
Medial subdivision of the lateral septal nucleus intermediate partipsiLSIm1.5
Lateral septal nucleus ventral partipsiLSV1.5
Stria terminalisipsist2
Central graycontraCG-0.5
Center of the dorsal central graycontraCGCD-0.5
Central gray dorsal peripheral partcontraCGDp-0.5
Central gray dorsomedialcontraCGDM-0.5
Central gray lateral dorsal peripheral partcontraCGLDp-0.5
Central gray lateral dorsal central partcontraCGLDc-0.5
Central gray lateral ventral partcontraCGVD-0.5
Central gray lateral ventral central partcontraCGVDc-0.5
Central gray pons partcontraCGP-0.5
Central gray periventricular partcontraCGpv-0.5
Central tegmental fieldcontraTGAC-0.5
Ventral tegmental area A10contraVTA-0.5
Ventrolateral tegmental areacontraVLTg-0.5
Pedunculopontine tegmental nucleuscontraPPTg-0.5
A5 noradrenaline cellscontraA5-0.5
Barringtons nucleuscontraBar-0.5
Locus coeruleuscontraLC-0.5
Cuneiforme nucleuscontraCnF-0.5
Lateral parabrachial nucleuscontraLPB-0.5
Parabrachial nucleus medialcontraPBnMe-0.5
Nucleus of the solitary tractcontraSol-0.5
Dorsal raphe nucleuscontraDR-0.5
Median raphe nucleuscontraMnR-0.5
Raphe magnus nucleuscontraRMg-0.5
Ventral lateral medulla oblongatacontraMVL-0.5
Diagonal band of BrocacontraDBB-0.5
Medial septal nucleuscontraMS-0.5
Substantia innominata pars subcommissuraliscontraSIsc-0.5
Substantia innominata sublenticular partcontraSIS-0.5
Lateral preoptic areacontraLPO-0.5
Medial preoptic areacontraMPA-0.5
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Lateral zonecontraLHA-0.5
Ventromedial hypothalamic nucleuscontraVMH-0.5
Arcuate nucleuscontraArc-0.5
Premammillary nucleus dorsal partcontraPMD-0.5
Premammillary nucleus ventral partcontraPMV-0.5
Central medial thalamic nucleuscontraCM-0.5
Rhomboid thalamic nucleuscontraRh-0.5
Mediodorsal thalamic nucleuscontraMD-0.5
Paratenial thalamic nucleuscontraPT-0.5
Paraventricular thalamic nucleuscontraPV-0.5
Reuniens thalamic nucleuscontraRe-0.5
Zona incertacontraZI-0.5
Lateral habenular nucleuscontraLHb-0.5
Stria medullaris of the thalamuscontrasm-0.5
Amygdaloid complexcontraAC-0.5
Lateral amygdaloid nucleuscontraLA-0.5
Bed nucleus of the stria terminaliscontraBST-0.5
Bed nucleus of the stria terminalis intraamygdaloid divisioncontraBSTIA-0.5
Central amygdaloid nucleuscontraCe-0.5
Medial amygdaloid nucleuscontraMe-0.5
Amygdalohippocampal areacontraAHi-0.5
Field CA1 of hippocampuscontraCA1-0.5
Precommissural nucleuscontraPrC-0.5
Lateral septal nucleus dorsal partcontraLSD-0.5
Lateral septal nucleus intermediate partcontraLSI-0.5
Lateral septal nucleus intermediate part ventral subdivisioncontraLSVIV-0.5
Dorsolateral subdivision of the lateral septal nucleus intermediate partcontraLSIDL-0.5
Dorsomedial subdivision of the lateral septal nucleus intermediate partcontraLSIDM-0.5
Lateral subdivision of the lateral septal nucleus intermediate partcontraLSIL-0.5
Medial subdivision of the lateral septal nucleus intermediate partcontraLSIm-0.5
Lateral septal nucleus ventral partcontraLSV-0.5
Stria terminaliscontrast-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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