University of Rostock

Department of Anatomy

Neuroscience Group

  Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Zona incerta left


Abbreviation
ZI
Color       
Superior regionsZona incerta, general

SynonymsAbbr.Language
Zona incertaZIEng

SubregionsSide
Caudalolateral regions of the zona incertaleft
Medial to rostromedial zona incertaleft
Nucleus of the fields of Forelleft
Ventrolateral subdivision of the zona incertaleft
Zona incerta anterior partleft
Zona incerta anteromedial partleft
Zona incerta caudal partleft
Zona incerta central partleft
Zona incerta dopaminergic groupleft
Zona incerta dorsal partleft
Zona incerta dorsocaudal partleft
Zona incerta dorsolateral partleft
Zona incerta lateral partleft
Zona incerta lateral to the paraventricular hypothalamic nucleusleft
Zona incerta magnocellular partleft
Zona incerta medial partleft
Zona incerta mediolateral extendleft
Zona incerta parvocellular partleft
Zona incerta posterior partleft
Zona incerta properleft
Zona incerta rostral partleft
Zona incerta rostrocaudal partleft
Zona incerta rostrolateralleft
Zona incerta rostromedial partleft
Zona incerta ventral partleft
Zona incerta pars rostropolarisleft

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC3
Central grayipsiCG3
Central gray dorsal partipsiCGD3
Central gray lateral partipsiCGL-0.5
Central grey caudal area ventral partipsicCGv2
Central grey periaqueductalipsiCGPAG-0.5
Central gray mesencephalic partipsiCGM2
Central gray mesencephalic part inferior colliculus levelipsiCGMinf1
Central gray mesencephalic part intercollicular levelipsiCGMint-1
Central gray mesencephalic part superior colliculus levelipsiCGMsc2
Central gray pons partipsiCGP3
Medial longitudinal fasciculusipsimlf-0.5
Nuclei of the lateral lemniscusipsiNLL3
Medial paralemniscal nucleusipsiMPL2
Paralemniscal reticular formationipsiPLRF-0.5
Nucleus of DarkschewitschipsiDk2
Periaqueductal grayipsiPAG3
Dorsal periaqueductal grayipsiDPAG2
Dorsolateral periaqueductal grayipsiDLPAG-0.5
Lateral periaqueductal grayipsiLPAG3
Periaqueductal gray caudal partipsiPAGc-0.5
Periaqueductal gray lateroventral partipsiPAGLV3
Periaqueductal gray medial partipsiPAGm3
Periaqueductal gray rostral partipsiPAGR3
Periaqueductal gray rostrolateral partipsiPAGRL1
Ventral periaqueductal grayipsiVPAG0
Ventrolateral periaqueductal grayipsiVLPAG4
Lateral caudal part of the ventrolateral periaqueductal grayipsiLCVLPAG-0.5
Periventricular gray matteripsiPVG2
Red nucleusipsiR3
Red nucleus magnocellular partipsiRMC0
Red nucleus parvicellular partipsiROC3
Inferior colliculusipsiICOL2
Superior colliculusipsiSC3
Superior colliculus lateral partipsiSCL-0.5
Superior colliculus intermediate and deep layersipsiSCidLa-0.5
Superior colliculus deep layersipsiSCd3
Deep gray layer of the superior colliculusipsiDpG3
Tegmental areaipsiTGA3
Central tegmental fieldipsiTGAC0
Central tegmental field dorsal partipsiTGACd1
Central tegmental field lateral partipsiTGACL3
Mesopontine tegmental area caudal partipsiTGAmc1.5
Mesopontine tegmental area mid-levelipsiTGAmm2
Mesopontine tegmental area rostral partipsiTGAmr2
Midbrain extrapyramidal areaipsiMEA1
Peduncularpontine nucleusipsiPPN3
Rostromedial tegmental nucleusipsiRMTg2
Substantia nigra A9ipsiSN3
Substantia nigra compact partipsiSNC3
Substantia nigra compact part rostral tier dorsolateral regionipsiSNCrdL1
Substantia nigra lateral partipsiSNL3
Substantia nigra reticular partipsiSNR3
Ventral tegmental area A10ipsiVTA4
Interfascicular nucleusipsiIF1
Ventral tegmental area A10 middle thirdipsiVTAmit-0.5
Ventral tegmental area anterior partipsiVTAA-0.5
Ventral tegmental area posterior partipsiVTAP-0.5
Caudal linear nucleus of the rapheipsiCLi1
Middle part of the retrorubral fieldipsiRRmi3
Ventrolateral tegmental areaipsiVLTg3
Lateral tegmental areaipsiLTGA3
Lateral tegmental nucleusipsiLTN-0.5
Laterodorsal tegmental nucleusipsiLDTg2.5
Ventral tegmental nucleusipsiVTg4
Dorsal tegmental nucleusipsiDTg2
Dorsal tegmental nucleus lateral partipsiDLTN1
Ventral tegmentum adjacent to mesencephalic periaqueductal grayipsiTGAamPAG-0.5
Pedunculopontine tegmental nucleusipsiPPTg3
Pedunculopontine tegmental nucleus caudal partipsiPPTgC1.5
Pedunculopontine tegmental nucleus mid levelipsiPPTgmL2
Pedunculopontine tegmental nucleus pars compactaipsiPPNC3
Pedunculopontine tegmental nucleus rostral partipsiPPTgR2
Dorsal midbrainipsiDMEC-0.5
Interstitial nucleus of CajalipsiInC2
ParaflocculusipsiPFl0.5
Cerebellar lobule 7ipsiCERL7-10
Cerebellar lobule 9ipsiCERL91
Cerebellar lobule 10ipsiCERL10-0.5
Interposed cerebellar nucleiipsiICN3
Anterior interposed nucleusipsiAIN-0.5
Posterior interposed nucleusipsiCERpin-0.5
Lateral cerebellar nucleusipsiCERL0
Medial cerebellar nucleusipsiMed3
Middle cerebellar peduncleipsimcp-2
Superior cerebellar peduncleipsisucep-2
PonsipsiP3
A5 noradrenaline cellsipsiA53
Barringtons nucleusipsiBar2
Medial basilar pontine regionipsiMeBaP3
Ventral surface of basilar ponsipsiVBaP3
Medial area of ponsipsiMeP-0.5
Locus coeruleusipsiLC3
Medial dendritic zone of the locus coeruleusipsiLCmd-0.5
Nucleus incertusipsiNI-0.5
Nucleus incertus pars compactaipsiNIc1
Nucleus incertus pars dissipataipsiNId1
Parapyramidal nucleusipsiPPy-0.5
Pontine sublaterodorsal nucleusipsiPsLdn2
Pontine grayipsiPG3
Dorsal peduncular region of the pontine grayipsiDPPG-0.5
Dorsomedial region of the pontine grayipsiDMPG1
Midline region of the pontine grayipsiMiPG1
Pontine gray properipsiPGp-0.5
Pontine tegmental fieldipsiPTF2
Dorsomedial tegmental areaipsiDMTg-0.5
Reticulotegmental nucleusipsiRETn3
Reticulotegmental nucleus of the ponsipsiRtTg1
Extreme ventral border of the pontine grayipsieVbPG1
Ventral pontine grayipsiVPG-0.5
Pontine nucleiipsiPn4
Caudal one fourth of the pontine nucleiipsiBPNcof0
Pontine nuclei rostral partipsiBPNr-0.5
Pontine nucleus medial partipsiBPNm-0.5
Prepositus nucleusipsiPr1
Reticular systemipsiRF3
Caudoventrolateral reticular nucleusipsiCVLR3
Reticular formation adjacent to the nucleus ambiguusipsiRFaA-0.5
Mesencephalic reticular formationipsiMRF3
Deep mesencephalic nucleusipsiDpMe3
Deep mesencephalic nucleus dorsal partipsiDpMeD4
Pontine reticular nucleusipsiPRN3
Pontine reticular nucleus central partipsiNRTPc-0.5
Pontine reticular nucleus oral partipsiPnO3
Pontine reticular nucleus caudal partipsiPNC3
Peribrachial regionipsiPBR2
Cuneiforme nucleusipsiCnF2
Parabrachial nucleusipsiPB1
Lateral parabrachial nucleusipsiLPB3
Parabrachial nucleus medialipsiPBnMe-0.5
Central part of the medial parabrachial nucleusipsiPBnCMe-0.5
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus medial partipsiGiM1
Lateral reticular nucleusipsiLRt0
Medullary reticular nucleusipsiMdD-0.5
Medullary reticular nucleus dorsal partipsiMdDd2
Medullary reticular nucleus lateral partipsiMdL0.5
Medullary reticular nucleus ventral partipsiMdV1
Parvicellular reticular nucleusipsiPCRt-0.5
MyelencephalonipsiMYC3
Medulla oblongataipsiMeOb4
Ambiguus nucleusipsiAmb-0.5
Area postremaipsiAP-0.5
Area postrema dorsolateral partipsiAPdL-0.5
Hypoglossal nucleusipsi12S3
Supratrigeminal nucleusipsiSu53
Mesencephalic trigeminal nucleusipsiMe53
Principal sensory trigeminal nucleus dorsomedial partipsiPr5DM0
Spinal trigeminal nucleus interpolar partipsiSp5I-0.5
Superior vestibular nucleusipsiSuVe-0.5
Medial vestibular nucleusipsiMVe3
Lateral vestibular nucleusipsiLVe3
Nucleus of the solitary tractipsiSol3
Nucleus of the solitary tract intermediate part parvicellular subdivisionipsiSoliMp3
Nucleus of the solitary tract lateral partipsiSolL1
Nucleus of the solitary tract medial partipsiSolM2
Nucleus of the solitary tract ventrolateral partipsiSolVL1
Dorsal motor nucleus of vagusipsi103
Raphe nucleiipsiRAN-0.5
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal partipsiDRC2
Dorsal raphe nucleus lateral wingipsiDRlw3
Dorsal raphe nucleus rostral partipsiDRr2
Median raphe nucleusipsiMnR2
Central raphe nucleus dorsal partipsiCRNdp2
Superior central raphe nucleusipsiCS2
Pontine raphe nucleusipsiPnR1
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb1
Raphe pallidus nucleusipsiRPa2
Ventral lateral medulla oblongataipsiMVL1
Caudal ventrolateral medulla lateral partipsiCVLMl1
Rostral ventrolateral medullaipsiRVLM2
A1 noradrenergic cellsipsiA1-0.5
Dorsal column nucleiipsiDCN-0.5
Olivary nucleusipsiON3
Inferior oliveipsiIO3
Inferior olive medial nucleusipsiIOM-0.5
Inferior olive principal nucleusipsiIOPr-0.5
Periolivary area between superior olivary nucleus and descending root of the facial nerveipsiPOAd7fn-0.5
Paragigantocellular reticular nucleusipsiPGi1
Lateral paragigantocellular nucleusipsiLPGi1
Paragigantocellular reticular nucleus rostral partipsiPGiR-0.5
Retrotrapezoid nucleusipsiRTN1
Inferior salivatory nucleusipsiIS0
Superior salivatory nucleusipsiSuS4
Choroidea innervating part of the superior salivatory nucleusipsiCSSN-10
Basal forebrainipsiBAF3
Median eminenceipsiME1
Internal zone of the median eminenceipsiiZME1
Median eminence external layeripsiMEeL1
Median eminence middle portion subependymal layeripsiMEmise1
Endopiriform systemipsiEnN-0.5
Diagonal band of BrocaipsiDBB2
Medial septal nucleusipsiMS1
Basal nucleus MeynertipsiB1
Substantia innominataipsiSI0
Substantia innominata caudal aspectipsiSIc1
Substantia innominata dorsal partipsiSID2
Substantia innominata pars subcommissuralisipsiSIsc2
Substantia innominata rostral aspectipsiSIr0.5
Substantia innominata sublenticular partipsiSIS1
Substantia innominata ventral partipsiSIV1
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA2
Lateral preoptic nucleusipsiLPN0.5
Medial preoptic nucleusipsiMPO0.5
Median preoptic nucleusipsiMnPO0
Tuberomammillary nucleusipsiTuM-0.5
Dorsal tuberomammillary nucleusipsiDTM3
Ventral tuberomammillary nucleusipsiVTM3
Ventral tuberomammillary nucleus rostral partipsiVTMr3
Dorsomedial hypothalamic nucleusipsiDMHy-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC1
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR2
Lateral zoneipsiLHA2
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area caudal partipsiLHc2
Lateral hypothalamic area juxtadorsomedial regionipsiJDM1
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0.5
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0.5
Lateral hypothalamic nucleusipsiLHN0.5
Lateral hypothalamic area [Lateral zone tuberal level]ipsiLHtu0.5
Medial division of the hypothalamusipsiMdH0.5
Anterior hypothalamic areaipsiAHA-0.5
Anterior hypothalamic area posterior partipsiAHAP0.5
Dorsal hypothalamic areaipsiDA-0.5
Dorsomedial hypothalamic areaipsiDMHyA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM-0.5
Posterior hypothalamic areaipsiPHA4
Posterior hypothalamic nucleusipsiPH2
Medial basal hypothalamusipsiMBH3
Ventromedial hypothalamic nucleusipsiVMH1
Periventricular zoneipsiPVZ0
Anterior periventricular nucleusipsiPeA0
Anteroventral periventricular nucleus 2ipsiAVPV20.5
Arcuate nucleusipsiArc0.5
Paraventricular hypothalamic nucleus medial parvocellular partipsiMPPa-0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP1
Paraventricular hypothalamic nucleus posterior part [Periventricular zone anterior region]ipsiPaPo1
Paraventricular hypothalamic nucleusipsiPa3
Paraventricular hypothalamic nucleus magnocellular division posterior partipsiPaMagP0
Paraventricular hypothalamic nucleus magnocellular division posterior part lateral zoneipsiPVHpml0
Paraventricular hypothalamic nucleus magnocellular division posterior part medial zoneipsiPVHpmm0
Paraventricular hypothalamic nucleus magnocellular division medial partipsiPaMagM0
Paraventricular hypothalamic nucleus anterior magnocellular divisionipsiPaMagA0
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo-0.5
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD1
Paraventricular hypothalamic nucleus parvocellular division lateroposterior subnucleiipsiPavPoLP0
Paraventricular nucleus medial parvicellular part dorsal zoneipsiPVHmpdo1
Paraventricular nucleus medial parvocellular part ventral zoneipsiPaMepv1
Paraventricular hypothalamic nucleus periventricular partipsiPapv2
Paraventricular nucleus anterior partipsiPaan2
Paraventricular nucleus dorsal edgeipsiPaDoE1
Paraventricular nucleus dorsal most portionipsiPaDom2
Paraventricular nucleus medial partipsiPame-0.5
Paraventricular nucleus medial part at mid paraventricular hypothalamic nucleus levelipsiPamemi1
Paraventricular nucleus medial part at posterior paraventricular hypothalamic nucleus levelipsiPamepo1
Peri-paraventricular hypothalamic nucleusipsiPPa2
Subparaventricular zone of the hypothalamusipsiSPa-0.5
Suprachiasmatic nucleusipsiSCh1
Supraoptic nucleus [Supraoptic region]ipsiSO0.5
Supraoptic nucleus vasopressin cellsipsiSOVa0
Supraoptic nucleus oxytocin cellsipsiSOo0
Medial mammillary nucleus lateral partipsiML-0.5
Medial mammillary nucleus medial partipsiMM-0.5
Medial mammillary nucleus median partipsiMMnm-0.5
Premammillary nucleus dorsal partipsiPMD1.5
Premammillary nucleus ventral partipsiPMV1
Supramammillary decussationipsisumx-2
A8 dopamine cells retrorubral groupipsiRRF3
A8 dopamine cells retrorubral group lateral partipsiRRFL3
A8 dopamine cells retrorubral group medial partipsiRRFm3
Dorsal thalamusipsiDOR3
Anterior group of the dorsal thalamusipsiATN2
Anteroventral thalamic nucleusipsiAV0.5
Dorsal part of the lateral geniculate complexipsiLGd-3
Ventral part of the lateral geniculate complexipsiLGv2
Central medial thalamic nucleusipsiCM2
Central medial thalamic nucleus lateral partipsiCMl2
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC2
Parafascicular thalamic nucleusipsiPF3
Parafascicular thalamic nucleus lateral partipsiPFL2
Parafascicular thalamic nucleus medial partipsiPFM2
Rhomboid thalamic nucleusipsiRh2
Posterior thalamic nuclear groupipsiPo3
Posterior thalamic nuclear group dorsocaudal partipsiPoDC1
Posterior thalamic nuclear group medial partipsiPoMe-0.5
Medial group of the dorsal thalamusipsiMED1
Mediodorsal thalamic nucleusipsiMD3
Intermediodorsal thalamic nucleusipsiIMD-0.5
Mediodorsal thalamic nucleus central partipsiMDC1
Mediodorsal thalamic nucleus lateral partipsiMDL2
Mediodorsal thalamic nucleus medial partipsiMDM-10
Paratenial thalamic nucleusipsiPT3
Paraventricular thalamic nucleusipsiPV3
Paraventricular thalamic nucleus middle divisionipsiPVMiD3
Paraventricular thalamic nucleus posterior partipsiPVP3
Reuniens thalamic nucleusipsiRe3
Reuniens thalamic nucleus caudomedial divisionipsiRecm3
Reunienes thalamic nucleus rostromedial divisionipsiRerm3
Reuniens thalamic nucleus rostrolateral divisionipsiRerl3
Subfornical organipsiSFO-0.5
Ventral posterior thalamic complexipsiVPT0
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Ventral posterolateral thalamic nucleus caudal partipsiVPLca-0.5
Ventral posterolateral thalamic nucleus posterior partipsiVPLP1
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Medial part of ventral posteromedial thalamic nucleusipsiVPMm1
Ventromedial thalamic nucleusipsiVM-0.5
Ventromedial thalamic nucleus caudal partipsiVMc2
Ventromedial thalamic nucleus caudal part lateral partipsiVMcL3
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt2
Intralaminar nucleiipsiILN3
Posterior intralaminar thalamic nucleusipsiPIL3
Parafascicular centre-median complexipsiPFCM-0.5
Parafascicular nucleusipsiPFa-0.5
Parafascicular centre median complexipsiPFCMc-0.5
Lateral thalamic nuclear groupipsiLTNG3
Lateral posterior thalamic nucleusipsiLP2
Lateral posterior thalamic nucleus laterorostral partipsiLPLR-0.5
Lateral posterior thalamic nucleus mediorostral partipsiLPMR-0.5
Laterodorsal thalamic nucleusipsiLD2
Laterodorsal thalamic nucleus ventromedial partipsiLDvm0.5
Posterior groupipsiPTG-0.5
Ventral thalamusipsiVNT3
Reticular thalamic nucleusipsiRt2
Reticular thalamic nucleus caudal partipsiRtc2
Reticular thalamic nucleus intermediate partipsiRti-10
Reticular thalamic nucleus lateral partipsiRtL1
Reticular thalamic nucleus rostral partipsiRtr3
Reticular thalamic nucleus ventrolateral partipsiRtvl3
Subparafascicular thalamic nucleus caudal partipsiSPFc2
Subparafascicular thalamic nucleus medial partipsiSPFme2
Subparafascicular thalamic nucleus rostral partipsiSPFr2
Ventral medial nucleus of the thalamusipsiVMT3
Zona incertaipsiZI2
Zona incerta medial tipipsiZImt2
Optic chiasmipsiox-2
Lateral habenular nucleusipsiLHb1
Pretectal regionipsiPRT3
Anterior pretectal nucleusipsiAPT3
Anterior pretectal nucleus caudal partipsiAPTca-0.5
Anterior pretectal nucleus caudolateral partipsiAPTcL2.5
Anterior pretectal nucleus reticular partipsiAPTre2
Medial pretectal nucleusipsiMPT2
Posterior pretectal nucleusipsiPPT3
Posterior pretectal nucleus caudolateral partipsiPPTcL2.5
Posterior pretectal nucleus rostral partipsiPPTr2
Pineal glandipsiPi1
Anterior lobe of pituitaryipsiAPit0
Intermediate lobe of pituitaryipsiIPit0
Rostral part of the posterior lobe of pituitaryipsiPPitr1
Vasopressinergic fiber bundle in the ventromedial stalk and postrior lobeipsiPITvaso1
Lateral portion of the cerebral peduncleipsiLpcp1
Lateral surface of the cerebral peduncleipsiLscp1
Dorsolateral funiculusipsidlft-2
Dorsomedial portion of the medial lemniscusipsidmml1
Stria medullaris of the thalamusipsism0
Dorsal bank of the anterior portion of the rhinal fissureipsidarf1
Amygdaloid complexipsiAC1
Lateral amygdaloid nucleusipsiLA-1
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv1
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf1
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA0
Bed nucleus of the stria terminalis lateral divisionipsiBSTL2
Bed nucleus of the stria terminalis medial divisionipsiBSTM2
Central amygdaloid nucleusipsiCe2
Medial amygdaloid nucleusipsiMe1
Amygdalohippocampal areaipsiAHi-0.5
ClaustrumipsiCl-0.5
Anterior part of the claustrumipsiACl1
Globus pallidusipsiGP3
Lateral globus pallidusipsiLGP2
Medial globus pallidusipsiMGP3
Ventral pallidumipsiVP1
Ventral pallidum medial partipsiVPm2
Caudate putamenipsiCPu3
Dorsal striatumipsiCPud0.5
Subthalamic nucleusipsiSTh2.5
Cerebral cortexipsiCEC0
HippocampusipsiHIPP3
Dorsal hippocampusipsiHIPPd-0.5
Dentate gyrusipsiDG-0.5
Ammon hornipsiAmH1
Field CA1 of hippocampusipsiCA1-0.5
Field CA2 of hippocampusipsiCA2-0.5
Field CA3 of hippocampusipsiCA3-0.5
Entorhinal cortexipsiEnt1
Lateral entorhinal cortexipsiLEnt0.5
Medial entorhinal cortexipsiMEnt0.5
Piriform cortexipsiPir-0.5
White matter of the neocortexipsiWMNCx-2
Cingulate cortexipsiCg3
Anterior cingulate cortex anterior partipsiACCa-1
Anterior cingulate cortex posterior partipsiACCp-1
Cingulate cortex area 1 caudal partipsiCg1c1
Cingulate cortex area 2 caudal partipsiCg2c1
Caudal cingulate cortexipsiCCg-0.5
Posterior cingulate cortex anterior partipsiPCCa-1
Posterior cingulate cortex posterior partipsiPCCp-1
Rostral part of the cingulate cortexipsiRCg-0.5
Prelimbic cortexipsiPrL3
Infralimbic cortexipsiIL3
Frontal association cortexipsiFrA3
Frontal cortex area 2 caudal partipsiFr2C1.5
Frontal cortex area 2 rostral partipsiFr2R1.5
Most ventral part of the pregenual part of the anteromedial cortexipsiFr2mvpg1
Parietal association cortexipsiPtA3
Temporal association area 2ipsiTe2-0.5
Temporal association cortex 1ipsiTeA-0.5
Auditory regionsipsiAU1
Frontal polar cortexipsiFP1
Insular cortexipsiICX3
Perirhinal cortexipsiA351
Ectorhinal cortexipsiA361.5
Postrhinal cortexipsiPOR1.5
Prefrontal cortexipsiPFC3
Rostromedial part of the frontal pole regionipsiFPFCRM1.5
Prefrontal cortex supragenual partipsisgPFC1
Dorsal part of the pregenual sector of the prefrontal cortexipsidpgPFC1
Frontoparietal cortex layersipsiFPC3
Motoric regionsipsiM3
Lateral prefrontal cortexipsilPFC1
Lateral agranular prefrontal cortexipsiAGl1.5
Forelimb motor cortexipsiFMCx3
Caudal forelimb motor areaipsiCFMA3
Elbow flexion motor cortexipsiEFMCx1
Lateral part of the granular cortex of forelimb motor regionsipsiLFMCx3
Ankle dorsiflexion motor cortexipsiADFMCx1
Ankle plantar flexion motor cortexipsiAPFMCx1
Hip flexion motor cortexipsiHFMCx0
Jaw movement motor cortexipsiJMCx1.5
Medial prefrontal cortexipsimPFC3
Medial prefrontal cortex posterior partipsimPFCp1
Medial agranular prefrontal cortexipsiAGm1
Sensory regionsipsiSR3
Primary somatosensory cortexipsiS12
Primary somatosensory cortex barrel fieldipsiS1BF2
Primary somatosensory cortex forelimb regionipsiS1FL2
Visual regionsipsiVR-0.5
Primary visual cortexipsiV13
Lateral extrastriate cortexipsiVISxL2
Medial extrastriate cortexipsiVISM2
Lateral orbital cortexipsiLO1
Ventral orbital cortexipsiVO1
Nucleus of the posterior commissureipsiPCom2
Precommissural nucleusipsiPrC2
Lateral geniculate complexipsiLG0
Ventral lateral geniculate nucleusipsiVLG-0.5
Dorsal portion of the lateral geniculate complexipsiLGD0.5
Medial geniculate nucleusipsiMG0.5
Interpeduncular nucleusipsiIP-0.5
Olfactory bulb A16ipsiMOB-0.5
Septal regionipsiSER-0.5
Lateral septal nucleusipsiLS3
Lateral septal nucleus intermediate partipsiLSI1.5
Lateral septal nucleus ventral partipsiLSV1
Border between medial and lateral septumipsiSERbML1
Stria terminalisipsist0
Spinal cordipsiMES0
Intermediolateral cell columnipsiIML1
Ventral funiculusipsivf-2
Cervical segmentsipsiCSeg3
Spinal cord layers C1ipsiSCLC1-0.5
Area X C1ipsiSCL10C1-0.5
Spinal cord layer 5 C1ipsiSCL5C1-0.5
Spinal cord layer 4 C1ipsiSCL4C1-0.5
Ventral horn C1ipsiVHC1-0.5
Spinal cord layers C2ipsiSCLC2-0.5
Area X C2ipsiSCL10C2-0.5
Spinal cord layer 5 C2ipsiSCL5C2-0.5
Spinal cord layer 4 C2ipsiSCL4C2-0.5
Ventral horn C2ipsiVHC20.5
Cervical segment 3ipsiCS3-0.5
Spinal cord layers C3ipsiSCLC3-0.5
Area X C3ipsiSCL10C3-0.5
Spinal cord layer 5 C3ipsiSCL5C3-0.5
Spinal cord layer 4 C3ipsiSCL4C3-0.5
Ventral horn C3ipsiVHC30.5
Cervical segment 4ipsiCS4-0.5
Spinal cord layers C4ipsiSCLC4-0.5
Area X C4ipsiSCL10C4-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Spinal cord layer 4 C4ipsiSCL4C4-0.5
Ventral horn C4ipsiVHC4-0.5
Spinal cord layers C5ipsiSCLC5-0.5
Area X C5ipsiSCL10C5-0.5
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Spinal cord layer 4 C5ipsiSCL4C5-0.5
Ventral horn C5ipsiVHC5-0.5
Spinal cord layers C6ipsiSCLC6-0.5
Area X C6ipsiSCL10C6-0.5
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 4 C6ipsiSCL4C6-0.5
Ventral horn C6ipsiVHC6-0.5
Cervical segment 7ipsiCS7-1
Spinal cord layers C7ipsiSCLC7-0.5
Area X C7ipsiSCL10C7-0.5
Spinal cord layer 5 C7ipsiSCL5C7-0.5
Spinal cord layer 4 C7ipsiSCL4C7-0.5
Ventral horn C7ipsiVHC7-0.5
Spinal cord layers C8ipsiSCLC8-0.5
Area X C8ipsiSCL10C8-0.5
Spinal cord layer 5 C8ipsiSCL5C8-0.5
Spinal cord layer 4 C8ipsiSCL4C8-0.5
Ventral horn C8ipsiVHC8-0.5
Cervical ventral hornipsiCSegV-0.5
Thoracal segmentsipsiTSeg1
Upper thoracic spinal cordipsiTSegUp-0.5
Intermediolateral cell column T1ipsiIMLT11
Spinal cord layers T1ipsiSCLT12
Area X T1ipsiSCL10T1-0.5
Spinal cord layer 5 T1ipsiSCL5T1-0.5
Spinal cord layer 4 T1ipsiSCL4T1-0.5
Intermediolateral cell column T2ipsiIMLT21
Spinal cord layers T2ipsiSCLT22
Area X T2ipsiSCL10T2-0.5
Spinal cord layer 5 T2ipsiSCL5T2-0.5
Spinal cord layer 4 T2ipsiSCL4T2-0.5
Intermediolateral cell column T3ipsiIMLT31
Spinal cord layers T3ipsiSCLT32
Area X T3ipsiSCL10T3-0.5
Spinal cord layer 5 T3ipsiSCL5T3-0.5
Spinal cord layer 4 T3ipsiSCL4T3-0.5
Intermediolateral cell column T4ipsiIMLT41
Spinal cord layers T4ipsiSCLT42
Area X T4ipsiSCL10T4-0.5
Spinal cord layer 5 T4ipsiSCL5T4-0.5
Spinal cord layer 4 T4ipsiSCL4T4-0.5
Intermediolateral cell column T5ipsiIMLT51
Spinal cord layers T5ipsiSCLT52
Area X T5ipsiSCL10T5-0.5
Spinal cord layer 5 T5ipsiSCL5T5-0.5
Spinal cord layer 4 T5ipsiSCL4T5-0.5
Intermediolateral cell column T6ipsiIMLT61
Spinal cord layers T6ipsiSCLT62
Area X T6ipsiSCL10T6-0.5
Spinal cord layer 5 T6ipsiSCL5T6-0.5
Spinal cord layer 4 T6ipsiSCL4T6-0.5
Intermediolateral cell column T7ipsiIMLT71
Spinal cord layers T7ipsiSCLT72
Area X T7ipsiSCL10T7-0.5
Spinal cord layer 5 T7ipsiSCL5T7-0.5
Spinal cord layer 4 T7ipsiSCL4T7-0.5
Thoracal segment 8ipsiT83
Intermediolateral cell column T8ipsiIMLT81
Spinal cord layers T8ipsiSCLT82
Area X T8ipsiSCL10T8-0.5
Spinal cord layer 5 T8ipsiSCL5T8-0.5
Spinal cord layer 4 T8ipsiSCL4T8-0.5
Thoracal segment 9ipsiT93
Intermediolateral cell column T9ipsiIMLT91
Spinal cord layers T9ipsiSCLT92
Area X T9ipsiSCL10T9-0.5
Spinal cord layer 5 T9ipsiSCL5T9-0.5
Spinal cord layer 4 T9ipsiSCL4T9-0.5
Thoracal segment 10ipsiT103
Intermediolateral cell column T10ipsiIMLT101
Spinal cord layers T10ipsiSCLT102
Area X T10ipsiSCL10T10-0.5
Spinal cord layer 5 T10ipsiSCL5T10-0.5
Spinal cord layer 4 T10ipsiSCL4T10-0.5
Thoracal segment 11ipsiT113
Intermediolateral cell column T11ipsiIMLT11-0.5
Spinal cord layers T11ipsiSCLT112
Area X T11ipsiSCL10T11-0.5
Spinal cord layer 5 T11ipsiSCL5T11-0.5
Spinal cord layer 4 T11ipsiSCL4T11-0.5
Thoracal segment 12ipsiT123
Intermediolateral cell column T12ipsiIMLT12-0.5
Spinal cord layers T12ipsiSCLT122
Area X T12ipsiSCL10T12-0.5
Spinal cord layer 5 T12ipsiSCL5T12-0.5
Spinal cord layer 4 T12ipsiSCL4T12-0.5
Thoracal segment 13ipsiT133
Intermediolateral cell column T13ipsiIMLT13-0.5
Spinal cord layers T13ipsiSCLT132
Area X T13ipsiSCL10T13-0.5
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Spinal cord layer 4 T13ipsiSCL4T13-0.5
Intermediate lamina of the thoracic spinal cordipsiTSegim-0.5
Lumbar segmentsipsiLSeg2
Lumbar segment 1ipsiL13
Spinal cord layers L1ipsiSCLL1-0.5
Area X L1ipsiSCL10L1-0.5
Spinal cord layer 5 L1ipsiSCL5L1-0.5
Spinal cord layer 4 L1ipsiSCL4L1-0.5
Lumbar segment 2ipsiL23
Spinal cord layers L2ipsiSCLL2-0.5
Area X L2ipsiSCL10L2-0.5
Spinal cord layer 5 L2ipsiSCL5L2-0.5
Spinal cord layer 4 L2ipsiSCL4L2-0.5
Lumbar segment 3ipsiL33
Spinal cord layers L3ipsiSCLL3-0.5
Area X L3ipsiSCL10L3-0.5
Spinal cord layer 5 L3ipsiSCL5L3-0.5
Spinal cord layer 4 L3ipsiSCL4L3-0.5
Lumbar segment 4ipsiL43
Spinal cord layers L4ipsiSCLL4-0.5
Area X L4ipsiSCL10L4-0.5
Spinal cord layer 5 L4ipsiSCL5L4-0.5
Spinal cord layer 4 L4ipsiSCL4L4-0.5
Lumbar segment 5ipsiL53
Dorsolateral nucleus lumbal segment 5ipsiDLNL50
Spinal cord layers L5ipsiSCLL5-0.5
Area X L5ipsiSCL10L5-0.5
Dorsal horn L5ipsiDHL50
Spinal cord layer 5 L5ipsiSCL5L5-0.5
Spinal cord layer 4 L5ipsiSCL4L5-0.5
Ventral horn L5ipsiVHL50
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL50
Lumbar segment 6ipsiL63
Dorsolateral nucleus lumbal segment 6ipsiDLNL60
Spinal cord layers L6ipsiSCLL6-0.5
Area X L6ipsiSCL10L6-0.5
Dorsal horn L6ipsiDHL60
Spinal cord layer 5 L6ipsiSCL5L6-0.5
Spinal cord layer 4 L6ipsiSCL4L6-0.5
Ventral horn L6ipsiVHL60
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL60
Sacral segmentsipsiSSeg2
Sacral segment 1ipsiSa13
Spinal cord layers S1ipsiSCLS1-0.5
Area X S1ipsiSCL10S1-0.5
Spinal cord layer 5 S1ipsiSCL5S1-0.5
Spinal cord layer 4 S1ipsiSCL4S1-0.5
Spinal cord layers S2ipsiSCLS2-0.5
Area X S2ipsiSCL10S2-0.5
Spinal cord layer 5 S2ipsiSCL5S2-0.5
Spinal cord layer 4 S2ipsiSCL4S2-0.5
Spinal cord layers S3ipsiSCLS3-0.5
Area X S3ipsiSCL10S3-0.5
Spinal cord layer 5 S3ipsiSCL5S3-0.5
Spinal cord layer 4 S3ipsiSCL4S3-0.5
Spinal cord layers S4ipsiSCLS4-0.5
Area X S4ipsiSCL10S4-0.5
Spinal cord layer 5 S4ipsiSCL5S4-0.5
Spinal cord layer 4 S4ipsiSCL4S4-0.5
Central graycontraCG1
Nuclei of the lateral lemniscuscontraNLL2
Periaqueductal graycontraPAG1
Lateral periaqueductal graycontraLPAG1
Periaqueductal gray medial partcontraPAGm1
Periaqueductal gray rostral partcontraPAGR-0.5
Ventrolateral periaqueductal graycontraVLPAG3
Red nucleuscontraR1
Red nucleus parvicellular partcontraROC-0.5
Inferior colliculuscontraICOL1
Superior colliculuscontraSC1
Central tegmental field dorsal partcontraTGACd1
Midbrain extrapyramidal areacontraMEA0.5
Peduncularpontine nucleuscontraPPN-0.5
Substantia nigra compact partcontraSNC0.5
Substantia nigra lateral partcontraSNL0.5
Ventral tegmental area A10contraVTA-0.5
Lateral tegmental areacontraLTGA3
Lateral tegmental nucleuscontraLTN-0.5
Laterodorsal tegmental nucleuscontraLDTg2
Ventral tegmental nucleuscontraVTg2
Dorsal tegmental nucleuscontraDTg1
Pedunculopontine tegmental nucleuscontraPPTg3
Interstitial nucleus of CajalcontraInC1
Paraflocculus ventral partcontraPFlv-0.5
Deep cerebellar nucleicontraDNC2
FlocculuscontraFl-0.5
A5 noradrenaline cellscontraA52
Locus coeruleuscontraLC1.5
Pontine sublaterodorsal nucleuscontraPsLdn0.5
Medial pontine graycontraMePG0.5
Pontine gray propercontraPGp-0.5
Pontine tegmental fieldcontraPTF0
Reticulotegmental nucleus of the ponscontraRtTg1
Pontine nucleicontraPn2
Prepositus nucleuscontraPr1
Mesencephalic reticular formationcontraMRF1
Deep mesencephalic nucleus dorsal partcontraDpMeD3
Pontine reticular nucleuscontraPRN3
Pontine reticular nucleus oral partcontraPnO1
Pontomesencephalic reticular formationcontraPMRF1
Pontine reticular nucleus caudal partcontraPNC1
Parabrachial nucleuscontraPB0
Lateral parabrachial nucleuscontraLPB1.5
Parabrachial nucleus medialcontraPBnMe-0.5
Gigantocellular reticular nucleuscontraGi3
Medullary reticular nucleus dorsal partcontraMdDd1
Medulla oblongatacontraMeOb2
Area postremacontraAP-0.5
Area postrema dorsolateral partcontraAPdL-0.5
Hypoglossal nucleuscontra12S3
Nucleus of the solitary tractcontraSol-0.5
Dorsal motor nucleus of vaguscontra10-0.5
Raphe nucleicontraRAN-0.5
Raphe magnus nucleuscontraRMg3
Raphe obscurus nucleuscontraROb1
Raphe pallidus nucleuscontraRPa1
Ventral lateral medulla oblongatacontraMVL0.5
Rostral ventrolateral medullacontraRVLM2
Inferior olivecontraIO3
Paragigantocellular reticular nucleuscontraPGi-0.5
Lateral paragigantocellular nucleuscontraLPGi1
Retrotrapezoid nucleuscontraRTN0.5
Inferior salivatory nucleuscontraIS0
Superior salivatory nucleuscontraSuS2
Choroidea innervating part of the superior salivatory nucleuscontraCSSN-10
Dorsal tuberomammillary nucleuscontraDTM2
Ventral tuberomammillary nucleuscontraVTM2
Ventral tuberomammillary nucleus rostral partcontraVTMr1
Lateral zonecontraLHA-0.5
Anteroventral periventricular nucleus 2contraAVPV20.5
Paraventricular hypothalamic nucleuscontraPa1
Paraventricular nucleus medial partcontraPame1
Suprachiasmatic nucleuscontraSCh0.5
A8 dopamine cells retrorubral groupcontraRRF1
Dorsal thalamuscontraDOR-0.5
Anteromedial thalamic nucleuscontraAM2
Anteroventral thalamic nucleus ventral partcontraAVv2
Central medial thalamic nucleuscontraCM1
Centrolateral thalamic nucleuscontraCL1
Paracentral thalamic nucleuscontraPC1
Parafascicular thalamic nucleuscontraPF1
Posterior thalamic nuclear groupcontraPo-0.5
Medial group of the dorsal thalamuscontraMED1
Mediodorsal thalamic nucleuscontraMD1
Mediodorsal thalamic nucleus lateral partcontraMDL-0.5
Midline group of the dorsal thalamuscontraMTN0.5
Paraventricular thalamic nucleuscontraPV3
Ventrolateral thalamic nucleus medial partcontraVLme2
Ventromedial thalamic nucleuscontraVM2
Intralaminar nucleicontraILN-0.5
Lateral posterior thalamic nucleuscontraLP1
Laterodorsal thalamic nucleuscontraLD1
Reticular thalamic nucleuscontraRt0
Subparafascicular thalamic nucleus caudal partcontraSPFc0.5
Subparafascicular thalamic nucleus medial partcontraSPFme0.5
Subparafascicular thalamic nucleus rostral partcontraSPFr0.5
Zona incertacontraZI1
Forel field H1contraFFH1-0.5
Anterior pretectal nucleus caudal partcontraAPTca-0.5
Posterior pretectal nucleus caudal partcontraPPTc-0.5
Subthalamic nucleuscontraSTh2
HippocampuscontraHIPP1
Dentate gyruscontraDG-0.5
Field CA1 of hippocampuscontraCA1-0.5
Field CA2 of hippocampuscontraCA2-0.5
Field CA3 of hippocampuscontraCA3-0.5
Entorhinal cortexcontraEnt-0.5
Medial entorhinal cortexcontraMEnt-0.5
Prelimbic cortexcontraPrL1
Infralimbic cortexcontraIL1
Parietal association cortexcontraPtA-0.5
Auditory regionscontraAU-0.5
Insular cortexcontraICX1
Motoric regionscontraM1
Lateral agranular prefrontal cortexcontraAGl1
Jaw movement motor cortexcontraJMCx1
Medial agranular prefrontal cortexcontraAGm1
Sensory regionscontraSR1
Primary somatosensory cortexcontraS11
Primary somatosensory cortex barrel fieldcontraS1BF0
Primary somatosensory cortex forelimb regioncontraS1FL0
Precommissural nucleuscontraPrC1
Intergeniculate leafcontraIGL0
Ventral lateral geniculate nucleuscontraVLG2
Ventral lateral geniculate nucleus magnocellular partcontraVLGMC0
Ventral lateral geniculate nucleus parvicellular partcontraVLGPC0.5
Ventral geniculate nucleus lateral partcontraVGL0.5
Cervical segmentscontraCSeg2
Cervical segment 7contraCS7-1
Spinal cord layers T1contraSCLT1-0.5
Spinal cord layers T2contraSCLT2-0.5
Spinal cord layers T3contraSCLT3-0.5
Spinal cord layers T4contraSCLT4-0.5
Spinal cord layers T5contraSCLT5-0.5
Spinal cord layers T6contraSCLT6-0.5
Spinal cord layers T7contraSCLT7-0.5
Spinal cord layers T8contraSCLT8-0.5
Spinal cord layers T9contraSCLT9-0.5
Spinal cord layers T10contraSCLT10-0.5
Spinal cord layers T11contraSCLT11-0.5
Spinal cord layers T12contraSCLT12-0.5
Spinal cord layers T13contraSCLT13-0.5
Lumbar segmentscontraLSeg2
Sacral segmentscontraSSeg2
Stellate ganglionipsiAutoSteG-0.5
Ventral stomach wallipsiOrgsStomVWS-0.5
Liver sideipsiOrgsLivs2
Liver lobeipsiOrgsLivL3
Sublingual glandipsiOrgSubLGL-0.5
Submandibular glandipsiOrgsSubg-0.5
Orbicularis oculi muscleipsiMuscOrbOc1
Lumbar epaxial musclesipsiMuscLep-0.5
Bulbospongiosus muscleipsiMuscbsp1
Femoral bone marrowipsiOrgSkFemM1
Intraperitoneal cavityipsiOrgiPTC3
ClitorisipsiOrgCLi1
Mammary glandipsiOrgMamG1
OvaryipsiOrgOvar1
VaginaipsiOrgVag-10
CervixipsiOrgUTC-10
Uterine hornipsiOrgUTh-10
Uterus bodyipsiOrgUTB-10
Epididymis caputipsiOrgEpiCa1
Epididymis caudaipsiOrgEpiCau2
ProstateipsiOrgProst-0.5
TestisipsiOrgTest1
Vas deferensipsiOrgVasDef1
KidneyipsiOrgsKid0.5
Submandibular glandcontraOrgsSubg1
Orbicularis oculi musclecontraMuscOrbOc1
Mammary glandcontraOrgMamG-0.5
OvarycontraOrgOvar-0.5
TestiscontraOrgTest-0.5
Vas deferenscontraOrgVasDef-0.5
KidneycontraOrgsKid0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG3
Central gray pons partipsiCGP-0.5
Central gray pons part pars alphaipsiSGCa1
Nuclei of the lateral lemniscusipsiNLL0.5
Nucleus of DarkschewitschipsiDk3
Periaqueductal grayipsiPAG3
Aqueductal part of periaqueductal grayipsiAPAG1
Dorsal periaqueductal grayipsiDPAG3
Dorsal periaqueductal gray caudal partipsiDPAGC3
Dorsolateral periaqueductal grayipsiDLPAG3
Dorsolateral periaqueductal gray caudal partipsiPAGdlc3
Dorsolateral periaqueductal gray rostral partipsiPAGdlr3
Lateral periaqueductal grayipsiLPAG3
Periaqueductal gray rostrolateral partipsiPAGRL3
Periaqueductal gray rostrocaudal extentipsiPAGroe3
Ventral periaqueductal grayipsiVPAG1
Ventrolateral periaqueductal grayipsiVLPAG3
Ventrolateral periaqueductal gray caudal partipsiPAGvlc1
Ventrolateral periaqueductal gray rostral partipsiPAGvlr3
Periventricular gray matteripsiPVG3
Periventricular gray anterior partipsiPVGan3
Red nucleusipsiR2
Prerubral fieldipsiPR0.5
Red nucleus magnocellular partipsiRMC1
Red nucleus parvicellular partipsiROC3
Intercollicular nucleusipsiInCo1
Superior colliculusipsiSC4
Superior colliculus superficial layersipsiSCs2
Superior colliculus intermediate and deep layersipsiSCidLa-0.5
Superior colliculus intermediate layersipsiSCi3
Intermediate gray layer of the superior colliculusipsiInG3
Intermediate white layer of the superior colliculusipsiInWh2
Superior colliculus deep layersipsiSCd3
Deep gray layer of the superior colliculusipsiDpG2
Deep gray layer of the superior colliculus rostrolateral partipsiDpGrL1
Deep white layer of the superior colliculusipsiDpWh1
Superior colliculus deep layers lateral partipsiSCdLa3
Superior colliculus deep layers medial partipsiSCdM3
Superior colliculus medial partipsimSC0.5
Superior colliculus ventrolateral partipsiSCVL3
Mesopontine tegmental area caudal partipsiTGAmc1.5
Mesopontine tegmental area dorsal partipsiTGAmd1.5
Mesopontine tegmental area mid-levelipsiTGAmm2
Mesopontine tegmental area rostral partipsiTGAmr2
Mesopontine tegmental area ventral partipsiTGAmv1.5
Midbrain extrapyramidal areaipsiMEA2
Pars reticulata of the peduncularpontine nucleusipsiPPNre-0.5
Substantia nigra A9ipsiSN3
Substantia nigra compact partipsiSNC2
Substantia nigra compact part ventral tieripsiSNCV-0.5
Substantia nigra compact part ventral tier dopaminergic neuron populationipsiSNCVdopa0.5
Substantia nigra lateral partipsiSNL2
Substantia nigra reticular partipsiSNR2
Substantia nigra reticular part caudal tieripsiSNRca1
Substantia nigra reticular part rostral tieripsiSNRro2
Ventral tegmental area A10ipsiVTA4
Interfascicular nucleusipsiIF-0.5
Ventral tegmental tailipsiVTTa1
Caudal linear nucleus of the rapheipsiCLi-0.5
Peripeduncular areaipsiPPA1.5
Retrorubral nucleusipsiRR2
Lateral tegmental areaipsiLTGA-0.5
Lateral tegmental nucleusipsiLTN1
Laterodorsal tegmental nucleusipsiLDTg3
Laterodorsal tegmental nucleus ventral partipsiLDTgV1.5
Ventral tegmental nucleusipsiVTg-0.5
Ventral tegmental nucleus peripheral partipsiVTgp-0.5
Ventral tegmental nucleus ventral partipsiVTgv-0.5
Dorsal tegmental nucleusipsiDTg2
Dorsal tegmental nucleus ventral partipsiDTgV-0.5
Pedunculopontine tegmental nucleusipsiPPTg3
Pedunculopontine tegmental nucleus caudal partipsiPPTgC1.5
Pedunculopontine tegmental nucleus caudolateral partipsiPPTgcL1
Pedunculopontine tegmental nucleus dorsal partipsiPPTgd1.5
Pedunculopontine tegmental nucleus mid levelipsiPPTgmL2
Pedunculopontine tegmental nucleus pars compactaipsiPPNC2
Pedunculopontine tegmental nucleus rostral partipsiPPTgR2
Pedunculopontine tegmental nucleus ventral partipsiPPTgv1.5
Interstitial nucleus of CajalipsiInC3
CerebellumipsiCERE3
Dorsolateral humpipsiCERcndl0
Deep cerebellar nucleiipsiDNC2
Interposed cerebellar nucleiipsiICN2
Anterior interposed nucleusipsiAIN2
Posterior interposed nucleusipsiCERpin0
Lateral cerebellar nucleusipsiCERL3
Medial cerebellar nucleusipsiMed0
A5 noradrenaline cellsipsiA5-0.5
Barringtons nucleusipsiBar2
Locus coeruleusipsiLC4
Nucleus incertus pars compactaipsiNIc3
Nucleus incertus pars dissipataipsiNId1
Pontine sublaterodorsal nucleusipsiPsLdn3
Pontomesencephalic grayipsiPoMG-0.5
Prepositus nucleusipsiPr1
Mesencephalic reticular formationipsiMRF3
Deep mesencephalic nucleusipsiDpMe3
Pontine reticular nucleusipsiPRN3
Pontine reticular nucleus oral partipsiPnO3
Pontine reticular nucleus oral part central partipsiPnOC3
Pontine reticular nucleus oral part dorsal partipsiPnOd3
Pontine reticular nucleus caudal partipsiPNC2
Peribrachial regionipsiPBR0
Cuneiforme nucleusipsiCnF0.5
Cuneiforme nucleus dorsal partipsiCnFD-0.5
Parabrachial nucleusipsiPB2.5
Central medial parabrachial nucleus waistipsiCMPBw-1
Koelliker Fuse nucleusipsiKF3
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus external partipsiLPBE-0.5
Lateral parabrachial nucleus ventral partipsiLPBV-0.5
Parabrachial nucleus caudal partipsiPBca-0.5
Parabrachial nucleus dorsal partipsiPBD1
Parabrachial nucleus medialipsiPBnMe2
Medial parabrachial nucleus external partipsiMPBE-1
Medial parabrachial nucleus lateral partipsiPBnMeL-0.5
Parabrachial nucleus ventral partipsiPBV1
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Lateral reticular nucleusipsiLRt2
Medial medullary reticular nucleusipsiMMdD-0.5
Medullary reticular nucleus dorsal partipsiMdDd2
Medullary reticular nucleus ventral partipsiMdV-0.5
Ventral medullary reticular formationipsiVMurF1
Parvicellular reticular nucleusipsiPCRt-0.5
Subcoeruleus nucleusipsiSubC3
Subcoeruleus nucleus dorsal partipsiSubCD2
Between subcoeruleus nucleus pars alpha and dorsal partipsiSubCAbD-0.5
Area postremaipsiAP-0.5
Apneic region of the intertrigeminal nucleusipsiI5ap1
Paratrigeminal nucleusipsiPa5-0.5
Mesencephalic trigeminal nucleusipsiMe50
Principal sensory trigeminal nucleusipsiPr53
Principal sensory trigeminal nucleus ventral partipsiPr5v2
Spinal trigeminal nucleus caudal partipsiSp5C1
Deep spinal trigeminal nucleus caudal partipsiDSp5C3
Spinal trigeminal nucleus interpolar partipsiSp5I3
Spinal trigeminal nucleus interpolar part border regionipsiSp5Ib2
Spinal trigeminal nucleus interpolar part caudal dorsomedialipsiSp5Icdm2
Spinal trigeminal nucleus interpolar part dorsal partipsiSp5ID3
Spinal trigeminal nucleus interpolar part dorsolateralipsiSp5IdL3
Spinal trigeminal nucleus interpolar part intermediate partipsiSp5Iim2
Spinal trigeminal nucleus interpolar part rostral ventrolateralipsiSp5IrvL2
Spinal trigeminal nucleus interpolar part ventrolateral magnocellularipsiSp5Imc2
Spinal trigeminal nucleus interpolar part ventrolateral parvocellular lateral partipsiSp5IvLL1
Spinal trigeminal nucleus interpolar part ventrolateral parvocellular medial partipsiSp5IvLm3
Spinal trigeminal nucleus oral partipsiSp5O2
Caudal part of spinal trigeminal nucleus oral partipsiSp5Oc3
Spinal trigeminal nucleus oral part layersipsiSp5OL0
Trigeminal subnucleus caudalisipsi5SSC3
Spinal vestibular nucleusipsiSpVe2
Superior vestibular nucleusipsiSuVe2
Medial vestibular nucleusipsiMVe2
Medial vestibular nucleus caudal partipsiMVeP0.5
Medial vestibular nucleus rostral part lateral partipsiMVeRL-0.5
Medial vestibular nucleus ventromedial partipsiMVevm2
Lateral vestibular nucleusipsiLVe-0.5
Inferior vestibular nucleusipsiIVN-0.5
Nucleus of the solitary tractipsiSol3
Caudal nucleus of the solitary tract medial partipsiSolcame1
Dorsal motor nucleus of vagusipsi10-0.5
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal partipsiDRC-0.5
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm2
Dorsal raphe nucleus central part of oral halfipsiDRcr-0.5
Dorsal raphe nucleus lateral part of oral halfipsiDRLr-0.5
Linear nucleus of the rapheipsiLIR1
Median raphe nucleusipsiMnR3
Superior central raphe nucleusipsiCS2
Superior central raphe nucleus compact subnucleusipsiSCc-0.5
Pontine raphe nucleusipsiPnR0
Raphe magnus nucleusipsiRMg1
Raphe obscurus nucleusipsiROb1
Pontomedullary raphe nucleiipsiRANPM-0.5
A1 noradrenergic cellsipsiA11
Dorsal column nucleiipsiDCN3
Cuneate nucleusipsiCu4
Anteroposterior part of cuneate nucleusipsiCuAP1.5
Cuneate nucleus caudal partipsiCuC2
Cuneate nucleus rostral partipsiCuRo2
Middle part of cuneate nucleusipsiCuM2
GracileipsiGra2
Gracile nucleus principal partipsiGr2
Rostral part of gracile nucleusipsiGrR1.5
Nucleus of BischoffipsiNBi2
Dorsomedial nucleus of AstoemipsiMeObDMA0
External cuneate nucleusipsiECu1
Nucleus ZipsiZ0
Olivary pretectal nucleusipsiOPT-0.5
Dorsal paragigantocellular nucleusipsiDPGi1
Lateral paragigantocellular nucleusipsiLPGi-0.5
Caudal part of the paragigantocellular reticular nucleusipsiCPGi1
Rostral ventral respiratory groupipsiRVRG1
Substantia innominataipsiSI3
Intermediate hypothalamic cell groupsipsiIHCG1
Lateral preoptic areaipsiLPO-0.5
Medial preoptic areaipsiMPA1
Medial preoptic area dorsolateral partipsiMPADL1
Medial preoptic nucleusipsiMPO3
Median preoptic nucleusipsiMnPO3
Median preoptic nucleus anterior ventral aspectipsiMnPOav-0.5
Vascular organ of the lamina terminalisipsiVOLT-0.5
Core of the vascular organ of the lamina terminalisipsiVOLTC0
Dorsomedial hypothalamic nucleusipsiDMHy3
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC2
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR1
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar0.5
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR0.5
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp0.5
Lateral zoneipsiLHA1
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area juxtadorsomedial regionipsiJDM2
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm1
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd1
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0.5
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa0.5
Lateral hypothalamic area perifornical partipsiPFx3
Lateral hypothalamic area [Lateral zone mammillary level]ipsiLHLZM0.5
Tuberal division of the lateral hypothalamic areaipsiLHTC-0.5
Anterior hypothalamic areaipsiAHA2
Anterior hypothalamic area posterior partipsiAHAP-2
Dorsal hypothalamic areaipsiDA2
Dorsal hypothalamic area lateral partipsiDAL1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM3
Posterior hypothalamic areaipsiPHA3
Posterior hypothalamic nucleusipsiPH0.5
Posterior hypothalamic nucleus caudal partipsiPHCa3
Posterior hypothalamic nucleus rostral partipsiPHRo3
Tuberal areaipsiTA-0.5
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus anterior partipsiVMHA2
Ventromedial hypothalamic nucleus central partipsiVMHC1
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM1
Ventromedial hypothalamic nucleus posterior partipsiVMHP-2
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL3
Arcuate nucleusipsiArc0.5
Outside the boundaries of the suprachiasmatic nucleusipsiOBSCh3
Paraventricular hypothalamic nucleusipsiPa2
Paraventricular hypothalamic nucleus surrounding regionipsiPaSurr3
Suprachiasmatic nucleusipsiSCh1
Suprachiasmatic nucleus dorsal divisionipsiSChd-0.5
Suprachiasmatic nucleus dorsomedial partipsiSCnDM2
Suprachiasmatic nucleus medial shellipsiSCnMDM1
Suprachiasmatic nucleus medial divisionipsiSCnM3
Suprachiasmatic nucleus perinuclear zoneipsiSChpnz3
Suprachiasmatic nucleus ventrolateral partipsiSCnVL3
Suprachiasmatic nucleus shell regionipsiSChS3
Suprachiasmatic nucleus medial shell regionipsiSChSM3
Premammillary nucleus dorsal partipsiPMD-2
Premammillary nucleus ventral partipsiPMV-2
Supramammillar nucleus lateral part lateral subpartipsiSuMLL3
Supramammillar nucleus lateral part medial subpartipsiSuMLM3
Supramammillar nucleus medial partipsiSuMM2
A8 dopamine cells retrorubral groupipsiRRF2
Perifornical nucleusipsiPeF1
Dorsal thalamusipsiDOR0.5
Anterior group of the dorsal thalamusipsiATN3
Anteroventral thalamic nucleusipsiAV0.5
Dorsal part of the lateral geniculate complexipsiLGd2
Ventral part of the lateral geniculate complexipsiLGv2
Central medial thalamic nucleusipsiCM-0.5
Central medial thalamic nucleus medial partipsiCMm0.5
Centrolateral thalamic nucleusipsiCL3
Parafascicular thalamic nucleusipsiPF2
Parafascicular thalamic nucleus caudal partipsiPFc2
Parafascicular thalamic nucleus lateral partipsiPFL-0.5
Parafascicular thalamic nucleus medial partipsiPFM0.5
Parafascicular thalamic nucleus rostral partipsiPFr2
Rhomboid thalamic nucleusipsiRh1
Posterior thalamic nuclear groupipsiPo3
Medial group of the dorsal thalamusipsiMED3
Mediodorsal thalamic nucleusipsiMD3
Submedius thalamic nucleus dorsal partipsiSubD-0.5
Submedius thalamic nucleus ventral partipsiSubV-0.5
Paratenial thalamic nucleusipsiPT3
Paraventricular thalamic nucleusipsiPV2.5
Reuniens thalamic nucleusipsiRe3
Subfornical organipsiSFO-0.5
Peripheral region of the subfornical organipsiSFOP-0.5
Subfornical organ most anterioripsiSFOmA-0.5
Subfornical organ most ventralipsiSFOmV-0.5
Caudal subfornical organipsiCSFO-0.5
Ventro anterior thalamic nucleusipsiVA-0.5
Ventral posterior thalamic complex medial partipsiVPTm3
Ventrobasal complexipsiVB1
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Ventromedial thalamic nucleusipsiVM-0.5
Ethmoid thalamic nucleusipsiEth2
Intralaminar nuclei anterior partipsiILNA0.5
Parafascicular centre-median complexipsiPFCM1
Parafascicular nucleusipsiPFa3
Lateral posterior thalamic nucleusipsiLP2
Laterodorsal thalamic nucleusipsiLD1.5
Posterior groupipsiPTG3
Reticular thalamic nucleusipsiRt3
Reticular thalamic nucleus rostrocaudal partipsiRtrc2
Ventral medial nucleus of the thalamusipsiVMT-0.5
Zona incertaipsiZI2
Forel field H1ipsiFFH11
Forel field H2ipsiFFH21
Nucleus of the optic tractipsiOT2
HabenulaipsiHAB-0.5
Lateral habenular nucleusipsiLHb1
Medial habenular nucleusipsiMHb2
Pretectal regionipsiPRT2
Anterior pretectal nucleusipsiAPT3
Anterior pretectal nucleus caudodorsal partipsiAPTcd3
Posterior pretectal nucleusipsiPPT-1
Accessory optic systemipsiAOS-3
Medial terminal nucleus of the accessory optic tractipsiMT-3
Basolateral amygdaloid nucleusipsiBL0
Bed nucleus of the stria terminalisipsiBST3
Bed nucleus of the stria terminalis oval nucleusipsiBSTo0.5
Bed nucleus of the stria terminalis lateral divisionipsiBSTL0.5
Bed nucleus of the stria terminalis supracapsular partipsiBSTS-1
Supracapsular bed nucleus of the stria terminalis lateral partipsiBSTSl-1
Bed nucleus of the stria terminalis ventral tipipsiBNSTvt1
Central amygdaloid nucleusipsiCe2
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM-0.5
Central division of sublenticular extended amygdalaipsiSLEAc-0.5
Anterior cortical amygdaloid nucleusipsiACo2
Medial amygdaloid nucleusipsiMe2
Anterior part of the claustrumipsiACl1
Globus pallidusipsiGP2
Caudal globus pallidusipsiGPc1
Dorsal globus pallidusipsiDGP0.5
Medial globus pallidusipsiMGP3
Rostral globus pallidusipsiGPr2
Subpallidal regionipsiSuPa-0.5
Ventral pallidumipsiVP0.5
Ventral pallidum lateral partipsiVPlp-0.5
Caudate putamenipsiCPu2
Caudal striatumipsiCPuc3
Dorsal striatumipsiCPud3
Rostral striatumipsiCPur1
Ventral striatumipsiCPuv2
Middle-third of the caudate putamenipsiCPuMit2
Subthalamic nucleusipsiSTh2
Parasubthalamic nucleusipsiPSTh-0.5
Subthalamic nucleus medial two-thirdsipsiSThMtt-0.5
Cerebral cortexipsiCEC1
Dorsal hippocampusipsiHIPPd2
Dentate gyrusipsiDG1
Field CA3 of hippocampusipsiCA32
Intermediate subiculum dorsal partipsiSidp1
Intermediate subiculum ventral partipsiSivp2
Midmediolateral caudal part of the ventral subiculumipsiSvcMM1
Entorhinal cortexipsiEnt2
Retrosplenial cortexipsiRSCx3
Retrosplenial agranular cortexipsiRSA2
Midrostrocaudal part of the retrosplenial dysgranular cortexipsiRSdysmrc-0.5
Area 29dipsiA29d1
Retrosplenial granular cortex c regionipsiRSGc1
Cerebral cortex layer 5ipsiCCL52
Cingulate cortexipsiCg3
Anterior cingulate cortexipsiACC3
Anterior cingulate cortex medial partipsiACCM1
Cingulate cortex area 1 caudal partipsiCg1c1
Cingulate cortex area 2 caudal partipsiCg2c1
Cingulate cortex area 3ipsiCg33
Posterior cingulate cortexipsiPCC2
Prelimbic cortexipsiPrL2
Prelimbic cortex dorsal partipsiPrLd1
Prelimbic cortex ventral partipsiPrLv1
Infralimbic cortexipsiIL2
NeocortexipsiNEOCX3
Frontal association cortexipsiFrA1
Frontal cortex area 1ipsiFr13
Frontal cortex area 2ipsiFr23
Parietal association cortexipsiPtA3
Parietal cortex posterior areaipsiParP-0.5
Parietal association cortex anterior areaipsiPtAA-0.5
Temporal cortexipsiTE2
Temporal association area 2ipsiTe2-0.5
Temporal association cortex 1ipsiTeA-0.5
Auditory regionsipsiAU3
Agranular insular cortexipsiAI3
Agranular insular cortex ventral part jaw movement areaipsiAIVjm-0.5
Dorsal insular cortexipsiDICX2
Granular insular cortexipsiGI1
Granular insular cortex layer 6ipsiGIL6-0.5
Dorsal part of the granular insular cortex rostroventrally adjacent to the rostralmost part of S2ipsidGlrvs21
Perirhinal cortex layer 5ipsiA35L53
Prefrontal cortexipsiPFC3
Prefrontal cortex layer 5ipsiPFCL53
Somatomotoric regionsipsiSMR1
Lateral prefrontal cortexipsilPFC3
Lateral agranular prefrontal cortexipsiAGl2
Caudal part of lateral agranular prefrontal cortexipsiAGlc1
Forelimb motor cortexipsiFMCx3
Rostral part of lateral agranular prefrontal cortex layer 5ipsiAGlrL5-0.5
Jaw movement motor cortexipsiJMCx1.5
Whisker motor cortex subfieldsipsiWMCxS-0.5
Primary motor cortex genital areaipsiM1ge1
Medial prefrontal cortexipsimPFC2
Medial agranular prefrontal cortexipsiAGm3
Medial agranular prefrontal cortex rostral partipsirAGm2
Medial agranular prefrontal cortex rostral part layer 5ipsirAGmL5-0.5
Sensory regionsipsiSR2
Primary somatosensory cortexipsiS13
Primary somatosensory cortex barrel field layer 5ipsiS1BF5-0.5
Primary somatosensory cortex layer 5ipsiS1L5-0.5
Primary somatosensory cortex layer 6ipsiS1L6-0.5
Secondary somatosensory cortexipsiS21
Secondary somatosensory cortex layer 5ipsiS2L5-0.5
Secondary somatosensory cortex layer 6ipsiS2L6-0.5
Visual regionsipsiVR3
Primary visual cortexipsiV12
Secondary visual cortexipsiV21
Secondary visual cortex lateral areaipsiV2L1
Anterolateral area of subdivision 18a in lateral extrastriate cortexipsiALV2L-0.5
Lateral extrastriate cortexipsiVISxL-0.5
Anterolateral part of the lateral extrastriate cortex layersipsiVISxLAL-0.5
Anterolateral cortical visual areaipsiVISal-1
Medial extrastriate cortexipsiVISM2
Orbital cortexipsiOrC1
Neocortex layer 1ipsiNEOCXL10
Neocortex layer 4ipsiNEOCXL40
Neocortex layer 2ipsiNEOCXL20
Neocortex layer 3ipsiNEOCXL30
Neocortex layer 5ipsiNEOCXL53
Neocortex layer 6ipsiNEOCXL60
Caudal neocortexipsiCauCx2
Nucleus of the posterior commissureipsiPCom1
Dorsal geniculate nucleus lateral partipsiDLGl2
Intergeniculate leafipsiIGL3
Intergeniculate leaf rostrocaudal partipsiIGLR3
Ventral lateral geniculate nucleusipsiVLG2
Ventral lateral geniculate nucleus lateral partipsiVLGl-0.5
Rostral portion of the ventral lateral geniculate nucleus medial partipsiVLGMR-0.5
Dorsal portion of the lateral geniculate complexipsiLGD0.5
Medial geniculate nucleusipsiMG1
Medial geniculate nucleus medial partipsiMGM1
Olfactory tubercleipsiTuO2
Septal regionipsiSER-0.5
Lateral septal nucleus dorsal partipsiLSD-2
Lateral septal nucleus intermediate partipsiLSI-2
Lateral septal nucleus ventral partipsiLSV-2
Anteroposterior extension of the lateral septal nucleusipsiLSap-2
Ventroposterior extension of the lateral septal nucleusipsiLSvp-2
Cervical segment 1ipsiCS11
Intermediomedial cell column C1ipsiIMMC1-0.5
Lateral spinal nucleus C1ipsiLSpC1-0.5
Spinal cord layers C1ipsiSCLC12
Dorsal horn C1ipsiDHC1-0.5
Cervical segment 2ipsiCS21
Intermediomedial cell column C2ipsiIMMC2-0.5
Lateral spinal nucleus C2ipsiLSpC2-0.5
Spinal cord layers C2ipsiSCLC22
Dorsal horn C2ipsiDHC2-0.5
Cervical segment 3ipsiCS31
Intermediomedial cell column C3ipsiIMMC3-0.5
Lateral spinal nucleus C3ipsiLSpC3-0.5
Spinal cord layers C3ipsiSCLC32
Dorsal horn C3ipsiDHC3-0.5
Cervical segment 4ipsiCS41
Intermediomedial cell column C4ipsiIMMC4-0.5
Lateral spinal nucleus C4ipsiLSpC4-0.5
Spinal cord layers C4ipsiSCLC42
Dorsal horn C4ipsiDHC4-0.5
Cervical segment 5ipsiCS51
Intermediomedial cell column C5ipsiIMMC5-0.5
Lateral spinal nucleus C5ipsiLSpC5-0.5
Spinal cord layers C5ipsiSCLC52
Dorsal horn C5ipsiDHC5-0.5
Cervical segment 6ipsiCS61
Intermediomedial cell column C6ipsiIMMC6-0.5
Lateral spinal nucleus C6ipsiLSpC6-0.5
Spinal cord layers C6ipsiSCLC62
Dorsal horn C6ipsiDHC6-0.5
Cervical segment 7ipsiCS71
Intermediomedial cell column C7ipsiIMMC7-0.5
Lateral spinal nucleus C7ipsiLSpC70.5
Spinal cord layers C7ipsiSCLC72
Area X C7ipsiSCL10C71
Dorsal horn C7ipsiDHC7-0.5
Spinal cord layer 5 C7ipsiSCL5C70.5
Spinal cord layer 6 C7ipsiSCL6C70.5
Spinal cord layer 3 C7ipsiSCL3C70.5
Spinal cord layer 4 C7ipsiSCL4C70.5
Spinal cord layer 1 C7ipsiSCL1C70.5
Spinal cord layer 2 C7ipsiSCL2C70.5
Spinal cord layer 7 C7ipsiSCL7C70.5
Cervical segment 8ipsiCS81
Intermediomedial cell column C8ipsiIMMC8-0.5
Lateral spinal nucleus C8ipsiLSpC8-0.5
Spinal cord layers C8ipsiSCLC82
Dorsal horn C8ipsiDHC8-0.5
Thoracal segment 1ipsiT11
Thoracal segment 2ipsiT21
Thoracal segment 3ipsiT31
Thoracal segment 4ipsiT41
Thoracal segment 5ipsiT51
Thoracal segment 6ipsiT61
Thoracal segment 7ipsiT71
Thoracal segment 8ipsiT81
Thoracal segment 9ipsiT91
Thoracal segment 10ipsiT101
Thoracal segment 11ipsiT111
Thoracal segment 12ipsiT121
Thoracal segment 13ipsiT131
Lumbar segment 1ipsiL11
Intermediomedial cell column L1ipsiIMML1-0.5
Lateral spinal nucleus L1ipsiLSpL1-0.5
Dorsal horn L1ipsiDHL1-0.5
Lumbar segment 2ipsiL21
Intermediomedial cell column L2ipsiIMML2-0.5
Lateral spinal nucleus L2ipsiLSpL2-0.5
Dorsal horn L2ipsiDHL2-0.5
Lumbar segment 3ipsiL31
Intermediomedial cell column L3ipsiIMML3-0.5
Lateral spinal nucleus L3ipsiLSpL3-0.5
Dorsal horn L3ipsiDHL3-0.5
Ventral horn L3ipsiVHL3-0.5
Lumbar segment 4ipsiL41
Intermediomedial cell column L4ipsiIMML4-0.5
Lateral spinal nucleus L4ipsiLSpL4-0.5
Dorsal horn L4ipsiDHL4-0.5
Ventral horn L4ipsiVHL4-0.5
Lumbar segment 5ipsiL51
Dorsal horn L5ipsiDHL5-0.5
Ventral horn L5ipsiVHL5-0.5
Lumbar segment 6ipsiL61
Dorsal horn L6ipsiDHL6-0.5
Ventral horn L6ipsiVHL6-0.5
Sacral segment 1ipsiSa11
Dorsal horn S1ipsiDHS1-0.5
Ventral horn S1ipsiVHSa1-0.5
Sacral segment 2ipsiSa21
Dorsal horn S2ipsiDHS2-0.5
Ventral horn S2ipsiVHSa2-0.5
Sacral segment 3ipsiSa31
Sacral segment 4ipsiSa41
Coccygeal segment 1ipsiCo11
Coccygeal segment 2ipsiCo21
Coccygeal segment 3ipsiCo31
Ventral horn of spinal cordipsiVHMES0.5
Central graycontraCG1
Central gray pons partcontraCGP-0.5
Nuclei of the lateral lemniscuscontraNLL0
Nucleus of DarkschewitschcontraDk1
Periaqueductal graycontraPAG0.5
Dorsal periaqueductal gray caudal partcontraDPAGC0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0.5
Dorsolateral periaqueductal gray rostral partcontraPAGdlr0.5
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0.5
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0.5
Red nucleuscontraR1
Prerubral fieldcontraPR0
Red nucleus parvicellular partcontraROC0
Superior colliculuscontraSC-0.5
Superficial gray layer of the superior colliculuscontraSuG0
Superior colliculus intermediate layerscontraSCi1
Intermediate gray layer of the superior colliculuscontraInG0.5
Intermediate white layer of the superior colliculuscontraInWh0
Superior colliculus deep layerscontraSCd2
Deep gray layer of the superior colliculuscontraDpG0
Deep white layer of the superior colliculuscontraDpWh0
Tegmental areacontraTGA2
Substantia nigra reticular partcontraSNR0
Ventral tegmental area A10contraVTA2
Peripeduncular areacontraPPA0
Retrorubral nucleuscontraRR1
Lateral tegmental nucleuscontraLTN1
Laterodorsal tegmental nucleuscontraLDTg-0.5
Laterodorsal tegmental nucleus ventral partcontraLDTgV0.5
Dorsal tegmental nucleuscontraDTg2
Pedunculopontine tegmental nucleuscontraPPTg2
Interstitial nucleus of CajalcontraInC1
Dorsolateral humpcontraCERcndl1
Interposed cerebellar nucleicontraICN-0.5
Anterior interposed nucleuscontraAIN2
Posterior interposed nucleuscontraCERpin3
Lateral cerebellar nucleuscontraCERL3
Medial cerebellar nucleuscontraMed1
A5 noradrenaline cellscontraA5-0.5
Locus coeruleuscontraLC3
Pontine sublaterodorsal nucleuscontraPsLdn3
Pontine nuclei lateral partcontraBPNL0
Pontine nuclei paramedian partcontraPnpm0
Prepositus nucleuscontraPr1
Mesencephalic reticular formationcontraMRF1
Deep mesencephalic nucleuscontraDpMe1
Pontine reticular nucleuscontraPRN2
Pontine reticular nucleus oral partcontraPnO1
Pontine reticular nucleus oral part central partcontraPnOC3
Pontine reticular nucleus oral part dorsal partcontraPnOd3
Pontine reticular nucleus caudal partcontraPNC1
Peribrachial regioncontraPBR0
Cuneiforme nucleuscontraCnF0
Parabrachial nucleuscontraPB-0.5
Koelliker Fuse nucleuscontraKF1
Lateral parabrachial nucleuscontraLPB0
Parabrachial nucleus dorsal partcontraPBD0.5
Parabrachial nucleus medialcontraPBnMe0
Parabrachial nucleus ventral partcontraPBV0
Gigantocellular reticular nucleuscontraGi1
Medullary reticular nucleus dorsal partcontraMdDd3
Ventral medullary reticular formationcontraVMurF1
Parvicellular reticular nucleuscontraPCRt1
Subcoeruleus nucleuscontraSubC-0.5
Between subcoeruleus nucleus pars alpha and dorsal partcontraSubCAbD-0.5
Supratrigeminal nucleuscontraSu53
Principal sensory trigeminal nucleuscontraPr53
Principal sensory trigeminal nucleus dorsomedial partcontraPr5DM3
Spinal trigeminal nucleuscontraSp5nc1
Deep spinal trigeminal nucleus caudal partcontraDSp5C3
Spinal trigeminal nucleus interpolar partcontraSp5I-0.5
Spinal trigeminal nucleus interpolar part rostrocaudalcontraSp5Irc1.5
Spinal trigeminal nucleus oral part layerscontraSp5OL3
Spinal vestibular nucleuscontraSpVe1
Superior vestibular nucleuscontraSuVe-0.5
Medial vestibular nucleuscontraMVe1
Nucleus of the solitary tractcontraSol1
Dorsal raphe nucleuscontraDR0
Superior central raphe nucleus compact subnucleuscontraSCc-0.5
Raphe magnus nucleuscontraRMg0
Dorsal column nucleicontraDCN2
Cuneate nucleuscontraCu3
Dorsal column nuclei caudal partcontraDCNc1
Dorsal column nuclei middle partcontraDCNm3
Dorsal column nuclei rostral partcontraDCNr1
Gracile nucleus principal partcontraGr1
Dorsomedial nucleus of AstoemcontraMeObDMA2
Olivary pretectal nucleuscontraOPT2
Rostral ventral respiratory groupcontraRVRG1
Intermediate hypothalamic cell groupscontraIHCG-0.5
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Lateral zonecontraLHA-0.5
Lateral hypothalamic areacontraLH0
Lateral hypothalamic area [Lateral zone mammillary level]contraLHLZM0
Anterior hypothalamic areacontraAHA-0.5
Dorsal hypothalamic areacontraDA-0.5
Posterior hypothalamic nucleuscontraPH0
Ventromedial hypothalamic nucleuscontraVMH-0.5
Ventromedial hypothalamic nucleus anterior partcontraVMHA1
Ventromedial hypothalamic nucleus central partcontraVMHC0.5
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM0.5
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL1.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Suprachiasmatic nucleuscontraSCh0
Suprachiasmatic nucleus medial shellcontraSCnMDM-0.5
Suprachiasmatic nucleus medial divisioncontraSCnM0.5
A8 dopamine cells retrorubral groupcontraRRF0
Perifornical nucleuscontraPeF-0.5
Anterior group of the dorsal thalamuscontraATN0
Centrolateral thalamic nucleuscontraCL-0.5
Parafascicular thalamic nucleuscontraPF2
Posterior thalamic nuclear groupcontraPo-0.5
Medial group of the dorsal thalamuscontraMED0
Mediodorsal thalamic nucleuscontraMD2
Paraventricular thalamic nucleuscontraPV0
Ventrobasal complexcontraVB0
Ventral posteromedial thalamic nucleuscontraVPM2
Lateral posterior thalamic nucleuscontraLP-0.5
Laterodorsal thalamic nucleuscontraLD-0.5
Posterior groupcontraPTG0
Reticular thalamic nucleuscontraRt0
Zona incertacontraZI1
Forel field H1contraFFH11
Forel field H2contraFFH21
Zona incerta caudal partcontraZIC3
Zona incerta dorsal partcontraZID-0.5
Zona incerta rostral partcontraZIR-0.5
Zona incerta ventral partcontraZIV-0.5
Medial habenular nucleuscontraMHb0
Pretectal regioncontraPRT-0.5
Anterior pretectal nucleuscontraAPT2
Lateral terminal nucleus of the accessory optic tractcontraLTeN0
Central amygdaloid nucleuscontraCe0
Medial globus palliduscontraMGP0
Subthalamic nucleuscontraSTh1
Dorsal hippocampuscontraHIPPd1
Dentate gyruscontraDG0.5
Retrosplenial agranular cortexcontraRSA0
Anterior cingulate cortexcontraACC0
Cingulate cortex area 3contraCg31.5
Posterior cingulate cortexcontraPCC0
Infralimbic cortexcontraIL0
Parietal association cortexcontraPtA0
Agranular insular cortexcontraAI1
Dorsal part of the granular insular cortex rostroventrally adjacent to the rostralmost part of S2contradGlrvs20
Lateral agranular prefrontal cortexcontraAGl1
Jaw movement motor cortexcontraJMCx1
Medial agranular prefrontal cortexcontraAGm0
Sensory regionscontraSR0
Primary somatosensory cortexcontraS10
Secondary somatosensory cortexcontraS20
Visual regionscontraVR0
Primary visual cortexcontraV10
Primary visual cortex layer 5contraV1L52
Secondary visual cortexcontraV20
Secondary visual cortex lateral areacontraV2L0
Nucleus of the posterior commissurecontraPCom1
Intergeniculate leafcontraIGL-0.5
Ventral lateral geniculate nucleuscontraVLG-0.5
Medial geniculate nucleuscontraMG2
Medial geniculate nucleus medial partcontraMGM0
Cervical segment 1contraCS14
Cervical segment 2contraCS24
Cervical segment 3contraCS33
Cervical segment 4contraCS42
Cervical segment 5contraCS52
Cervical segment 6contraCS61
Cervical segment 7contraCS72
Lateral spinal nucleus C7contraLSpC70.5
Spinal cord layer 5 C7contraSCL5C70.5
Spinal cord layer 6 C7contraSCL6C70.5
Spinal cord layer 3 C7contraSCL3C70.5
Spinal cord layer 4 C7contraSCL4C70.5
Spinal cord layer 1 C7contraSCL1C70.5
Spinal cord layer 2 C7contraSCL2C70.5
Spinal cord layer 7 C7contraSCL7C70.5
Cervical segment 8contraCS82
Thoracal segment 1contraT11
Thoracal segment 2contraT21
Thoracal segment 3contraT31
Thoracal segment 4contraT41
Thoracal segment 5contraT51
Thoracal segment 6contraT61
Thoracal segment 7contraT71
Thoracal segment 8contraT81
Thoracal segment 9contraT92
Thoracal segment 10contraT102
Thoracal segment 11contraT112
Thoracal segment 12contraT121
Thoracal segment 13contraT131
Lumbar segment 1contraL13
Lumbar segment 2contraL23
Lumbar segment 3contraL33
Lumbar segment 4contraL42
Lumbar segment 5contraL52
Lumbar segment 6contraL63
Sacral segment 1contraSa13
Sacral segment 2contraSa23
Sacral segment 3contraSa31
Sacral segment 4contraSa41
Coccygeal segment 1contraCo11
Coccygeal segment 2contraCo21
Coccygeal segment 3contraCo31
Ventral horn of spinal cordcontraVHMES0.5
Stomach wallipsiOrgsStomWS-0.5
Vitreous humor of eyecontraOrgVHEye-0.5
LungipsiOrgsLung-10
Trachea sideipsiOrgsTras-10
Trachea sidecontraOrgsTras4

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications