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Rat connectome



Median eminence left


Abbreviation
ME
Color       
Superior regionsEminence regions

SynonymsAbbr.Language
Median eminenceMEEng

SubregionsSide
Internal zone of the median eminenceleft
Magnocellular subdivision of median eminenceleft
Median eminence external layerleft
Neurohemal zone of the median eminenceleft
Median eminence ventral partleft
Median eminence middle portionleft
Median eminence fibrous zoneleft
Median eminence rostral partleft
Median eminence subependymal layerleft
Median eminence intermediate layerleft

Output to

NameSideAbbr.WeightDetails
Jugular veinipsijugV-2
Dorsomedial hypothalamic nucleusipsiDMHy-2
Anterior hypothalamic areaipsiAHA-2
Ventromedial hypothalamic nucleusipsiVMH-2
Arcuate nucleusipsiArc-2
Arcuate nucleus middle partipsiArcMi1
Paraventricular hypothalamic nucleus lateral partipsiPaLa-0.5
Paraventricular hypothalamic nucleusipsiPa-2
Paraventricular nucleus medial partipsiPame-0.5
Periventricular hypothalamic nucleusipsiPe3
ThalamusipsiT-0.5
Intermediate lobe of pituitaryipsiIPit-2
Posterior lobe of pituitaryipsiPPit-0.5
Bed nucleus of the stria terminalis anterior divisionipsiBSTA-0.5
Lateral septal nucleusipsiLS-0.5
3d ventricleipsi3V3
Ventromedial hypothalamic nucleuscontraVMH-0.5
Middle of the back skinipsiOrgBSkm-0.5

Input from

NameSideAbbr.WeightDetails
Ventral tegmental area A10ipsiVTA-0.5
Nucleus of the medial forebrain bundleipsiNmfb0.5
C3 adrenaline cellsipsiC3-10
Nucleus of the solitary tractipsiSol1.5
Nucleus of the solitary tract caudal partipsiSolca-0.5
Caudal nucleus of the solitary tract medial partipsiSolcame1
Dorsal raphe nucleusipsiDR1.5
Median raphe nucleusipsiMnR1.5
Superior central raphe nucleusipsiCS1.5
A1 noradrenergic cellsipsiA11
Diagonal band of BrocaipsiDBB3
Medial septal nucleusipsiMS2
Preoptic regionipsiPREO-0.5
Accessory nucleus of the preoptic regionipsiAPREO0.5
Intermediate hypothalamic cell groupsipsiIHCG0
Lateral preoptic areaipsiLPO-0.5
Medial preoptic areaipsiMPA2
Medial preoptic area periventricular partipsiMPApv2
Nucleus medianus of the medial preoptic area above anterior commissureipsiMPAmeaac0.5
Preoptic nucleusipsiPREn-0.5
Medial preoptic nucleusipsiMPO3
Median preoptic nucleusipsiMnPO0.5
Tenia tectaipsiTT-0.5
Tuberomammillary nucleusipsiTuM-0.5
DiencephalonipsiDEC-0.5
Vascular organ of the lamina terminalisipsiVOLT-0.5
HypothalamusipsiHYPO-0.5
Dorsomedial hypothalamic nucleusipsiDMHy1
Lateral zoneipsiLHA0
Lateral hypothalamic areaipsiLH3
Dorsolateral hypothalamusipsiDLH2
Lateral hypothalamic area perifornical partipsiPFx3
Lateral hypothalamic area ventral partipsiLHAvp-0.5
Tuberal region of lateral hypothalamusipsiTuLH-0.5
Basal lateral hypothalamusipsiBLH-0.5
Lateral hypothalamic area [Lateral zone tuberal level]ipsiLHtu-0.5
Anterior hypothalamic areaipsiAHA1
Anterior hypothalamic area at the posterolateral border of the suprachiasmatic nucleusipsiAHApLSCh-2
Anterior hypothalamic area central partipsiAHAC-2
Anterior hypothalamic area posterior partipsiAHAP-2
Anterior hypothalamic nucleusipsiAHn0.5
Anterior part of the anterior hypothalamic nucleusipsiAHna-2
Dorsal hypothalamic areaipsiDA2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM3
Dorsomedial hypothalamic nucleus ventral partipsiDMV1
Nucleus circularisipsiNC-0.5
Subparaventricular zoneipsiSuPZ-0.5
Lateral part of ventral subparaventricular zoneipsiSuPZvL1
Subparaventricular zone ventromedial partipsiSuPZvm3
Subparaventricular zone dorsomedial partipsiSuPZdm4
Subparaventricular zone dorsolateral partipsiSuPZdL2
Ventromedial hypothalamic nucleusipsiVMH1
Ventromedial hypothalamic nucleus central partipsiVMHC-0.5
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM-0.5
Ventromedial hypothalamic nucleus lateral partipsiVMHL-0.5
Ventromedial hypothalamic nucleus posterior partipsiVMHP0.5
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL1
Periventricular zoneipsiPVZ-0.5
Anterior periventricular nucleusipsiPeA0.5
Arcuate nucleusipsiArc3
Arcuate nucleus dorsal partipsiArcD-0.5
Arcuate nucleus lateral partipsiArcL0
Arcuate nucleus medial partipsiArcM-0.5
Arcuate nucleus rostral two thirdsipsiArcRtt-0.5
Arcuate nucleus ventral portionipsiArcV-0.5
Arcuate nucleus ventrolateral partipsiArcVL-0.5
Arcuate nucleus dorsomedial partipsiArcdm-0.5
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR3
Paraventricular hypothalamic nucleus caudal partipsiPaPoC-0.5
Paraventricular nucleus of the hypothalamus magnocellular division anterior magnocellular partipsiPaAMa-0.5
Paraventricular hypothalamic nucleus lateral magnocellular part [Periventricular zone anterior region]ipsiPaLM3
Nucleus paraventricularis parvocellular partipsiPaPaP3
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP3
Paraventricular hypothalamic nucleus parvicellular division dorsal partipsiPaPcD2
Paraventricular hypothalamic nucleus medial parvocellular partipsiMPPa2
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP-0.5
Paraventricular hypothalamic nucleus dorsal partipsiPaD2
Paraventricular hypothalamic nucleus lateral partipsiPaLa-0.5
Paraventricular hypothalamic nucleusipsiPa4
Paraventricular hypothalamic nucleus dorsomedial capipsiPadmc1
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag4
Paraventricular hypothalamic nucleus magnocellular vasopressin and oxytocin neuronsipsiPaMagvo-0.5
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo3
Paraventricular hypothalamic nucleus anterior parvicellular subdivisionipsiaPavPo-0.5
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD-0.5
Paraventricular nucleus lateral parvocellular partipsiPaLp-0.5
Paraventricular nucleus medial parvocellular partipsiPaMep-0.5
Paraventricular nucleus medial parvicellular part dorsal zoneipsiPVHmpdo-0.5
Dorsolateral part of the middle third of the medial parvocellular paraventricular nucleusipsiPaMepMiD-0.5
Paraventricular hypothalamic nucleus parvocellular neurosecretory neuronsipsiPansn-0.5
Paraventricular hypothalamic nucleus periventricular partipsiPapv2
Paraventricular nucleus medial partipsiPame3
Paraventricular nucleus medial magnocellular groupipsiPameMag3
Paraventricular nucleus posterior partipsiPaPos1
Paraventricular nucleus extreme posterior positionipsiPaPosEPP1
Periventricular hypothalamic nucleusipsiPe1
Preoptic periventricular nucleusipsiPePO0.5
Suprachiasmatic nucleusipsiSCh2
Suprachiasmatic nucleus dorsomedial partipsiSCnDM-0.5
Supraoptic nucleus [Supraoptic region]ipsiSO4
Supraoptic nucleus retrochiasmatic partipsiSOR-0.5
Magnocellular neurons between the supraoptic nucleus and the paraventricular nucleusipsiMSOPa1
Periventricular groupipsiPEG1
Supraoptic hypothalamic partipsiSOHYP-0.5
Incerto hypothalamic areaipsiicHYPO1
Mammillary bodyipsiCMAM-0.5
Perifornical nucleusipsiPeF-0.5
Retrochiasmatic areaipsiRCh2
Retrochiasmatic area lateral partipsiRChL-2
Retrochiasmatic area anterior partipsiRChA-0.5
Reuniens thalamic nucleusipsiRe-0.5
Subparafascicular thalamic nucleusipsiSPF0
Subparafascicular thalamic nucleus rostral partipsiSPFr0
Zona incertaipsiZI1
Zona incerta rostromedial partipsiZIrm-0.5
Amygdaloid complexipsiAC-0.5
Accessory basal nucleus magnocellular divisionipsiABm-0.5
Bed nucleus of the stria terminalisipsiBST0.5
Posterior amygdaloid nucleus medial partipsiCOApm4
Anterior commissural nucleusipsiACOS-0.5
Septal regionipsiSER-0.5
Lateral septal nucleusipsiLS3
Triangular septal nucleusipsiTS-0.5
Diagonal band of BrocacontraDBB-0.5
Medial septal nucleuscontraMS-0.5
Preoptic regioncontraPREO-0.5
Medial preoptic areacontraMPA-0.5
Median preoptic nucleuscontraMnPO-0.5
Tuberomammillary nucleuscontraTuM-0.5
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Lateral hypothalamic areacontraLH-0.5
Tuberal region of lateral hypothalamuscontraTuLH-0.5
Anterior hypothalamic areacontraAHA-0.5
Anterior hypothalamic nucleuscontraAHn0.5
Dorsal hypothalamic areacontraDA-0.5
Dorsomedial hypothalamic nucleus ventral partcontraDMV0.5
Nucleus circulariscontraNC-0.5
Ventromedial hypothalamic nucleuscontraVMH-0.5
Ventromedial hypothalamic nucleus posterior partcontraVMHP0.5
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL-0.5
Periventricular zonecontraPVZ-0.5
Arcuate nucleuscontraArc-0.5
Arcuate nucleus dorsal partcontraArcD-0.5
Arcuate nucleus medial partcontraArcM-0.5
Nucleus paraventricularis [Periventricular zone anterior region]contraPaPAR-0.5
Paraventricular hypothalamic nucleus dorsal partcontraPaD1
Paraventricular hypothalamic nucleus lateral magnocellular part [Periventricular zone anterior region]contraPaLM0.5
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]contraPaMP3
Paraventricular hypothalamic nucleus medial parvocellular partcontraMPPa1
Paraventricular hypothalamic nucleuscontraPa-0.5
Paraventricular hypothalamic nucleus parvocellular divisioncontraPavPo-0.5
Paraventricular hypothalamic nucleus periventricular partcontraPapv1
Paraventricular nucleus medial partcontraPame2
Paraventricular nucleus posterior partcontraPaPos0.5
Periventricular hypothalamic nucleuscontraPe-0.5
Suprachiasmatic nucleuscontraSCh-0.5
Supraoptic nucleus [Supraoptic region]contraSO0.5
Retrochiasmatic areacontraRCh-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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