University of Rostock

Department of Anatomy

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Rat connectome



Central gray mesencephalic part inferior colliculus level left


Abbreviation
CGMinf
Color       
Superior regionsCentral gray mesencephalic part

SynonymsAbbr.Language
Central gray mesencephalic part inferior colliculus levelCGMinfEng

Input from

NameSideAbbr.WeightDetails
Substantia nigra compact partipsiSNC0.5
Substantia nigra lateral partipsiSNL-1
Substantia nigra reticular partipsiSNR-1
Substantia nigra reticular part dorsolateral tieripsiSNRDL-1
Substantia nigra reticular part dorsomedial tieripsiSNRDM-1
Ventral tegmental area A10ipsiVTA-1
Diagonal band of BrocaipsiDBB0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB-1
Nucleus of the vertical limb of the diagonal bandipsiVDB-1
Lateral preoptic areaipsiLPO0.5
Medial preoptic areaipsiMPA1
Magnocellular preoptic nucleusipsiMCPO-1
Lateral hypothalamic areaipsiLH-1
Lateral hypothalamic area ventral partipsiLHAvp-1
Anterior hypothalamic areaipsiAHA1
Anterior hypothalamic area lateral partipsiAHAl-1
Anterior hypothalamic area medial partipsiAHAm-1
Posterior hypothalamic areaipsiPHA-1
Ventromedial hypothalamic nucleus anterior partipsiVMHA1
Ventromedial hypothalamic nucleus central partipsiVMHC-1
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM1
Ventromedial hypothalamic nucleus posterior partipsiVMHP0.5
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL1.5
Arcuate nucleusipsiArc-1
Paraventricular hypothalamic nucleusipsiPa0.5
Suprachiasmatic nucleusipsiSCh1
Premammillary nucleus dorsal partipsiPMD0.5
Premammillary nucleus ventral partipsiPMV-1
Supramammillar nucleusipsiSuM-1
Parafascicular thalamic nucleusipsiPF0.5
Zona incertaipsiZI1
Nucleus of the fields of ForelipsiF1
Zona incerta mediolateral extendipsiZIml1
Zona incerta rostral partipsiZIR0.5
Lateral habenular nucleusipsiLHb0.5
Medial habenular nucleusipsiMHb0.5
Cerebral peduncle basal partipsicp-1
Crus cerebri dorsolateral part to the most dorsal tipipsicpdldT-1
Bed nucleus of the stria terminalisipsiBST1
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd0.5
Bed nucleus of the stria terminalis ventral partipsiBNSTv-1
Central amygdaloid nucleusipsiCe0.5
Central amygdaloid nucleus caudal divisionipsiCeCD0.5
Central amygdaloid nucleus medial divisionipsiCeM0.5
Central amygdaloid nucleus ventral partipsiCeV0.5
Anterior amygdaloid areaipsiAA0.5
Medial amygdaloid nucleusipsiMe0.5
Fornixipsif0.5
Cerebral cortex layer 5ipsiCCL5-1
Cingulate cortexipsiCg-1
Cingulate cortex area 2ipsiCg2-1
Prelimbic cortexipsiPrL-1
Retrolimbic areaipsiReLA-1
Frontal cortex area 1ipsiFr1-1
Frontal cortex area 2ipsiFr2-1
Frontal cortex area 3ipsiFr3-1
Lateral agranular prefrontal cortexipsiAGl-1
Primary visual cortexipsiV1-1
Secondary visual cortexipsiV2-1
Lateral orbital cortexipsiLO-1
Posterior orbital cortexipsiOrCP-1
Orbital prefrontal cortexipsioPFC-1
Septal regionipsiSER-1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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